TCONS_00049135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049135
Unique NameTCONS_00049135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049135 ID=TCONS_00049135|Name=TCONS_00049135|organism=Clytia hemisphaerica|type=transcript|length=665bp
TTTGGTAGCAGAGGGTGGTTTGGTACTGTTGGTACAGTCATGTAGAACAG
CATGGATGGCGTCAAAAACATACCCATGCTGATCTCTGCTTGAATTGGGC
ATTATCTGGTGGTATCAGTGCAATTCGGGGCAAACAGCATGGAATCTGTC
GTGCATGAAGTCTTGTAGATGTGGAGACATTGTGGTCCATCGCCACCGCG
CTGGACATCAAGTTCACTGAAAGGGCAAGGGGTAAGGAATTTGAATTACG
TCGTTTTGTTTTACGCTATTTGAActctgaaattttggaaagtCAACAGG
ATGGGGGGATGGCAGAGTTCCAACGAGCCAAAAAGANACTGAAAGGGCAA
GGGGTAAGGAATTTGAATTACGTCGTTTTGTTTTACGCTATTTGAActct
gaaattttggaaagtCAACAGGATGGGGGGATGGCAGAGTTCCAACGAGC
CAAAAAGATCCTGAGGGGGAGACCTGACCCACTGGCTGACATCCCAGTTG
AAGACTTCCAGGACCCATTTGAATCGATTGACCCTTTCGCAACACCCATA
TTTTCGTCAAAGCCACGACAGTCATCCATGGCTACCCAAACTAAAGTATT
GGACCCCGGTAACAGACCCAAGATGAACAACACAAACCCTTTTGAACCAG
TACCAAGGATCTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_152:134206..134870

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049135 ID=TCONS_00049135|Name=TCONS_00049135|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at scaffold_152:134206..134870 (Clytia hemisphaerica)
GGGAGATCCTTGGTACTGGTTCAAAAGGGTTTGTGTTGTTCATCTTGGGT
CTGTTACCGGGGTCCAATACTTTAGTTTGGGTAGCCATGGATGACTGTCG
TGGCTTTGACGAAAATATGGGTGTTGCGAAAGGGTCAATCGATTCAAATG
GGTCCTGGAAGTCTTCAACTGGGATGTCAGCCAGTGGGTCAGGTCTCCCC
CTCAGGATCTTTTTGGCTCGTTGGAACTCTGCCATCCCCCCATCCTGTTG
actttccaaaatttcagagTTCAAATAGCGTAAAACAAAACGACGTAATT
CAAATTCCTTACCCCTTGCCCTTTCAGTNTCTTTTTGGCTCGTTGGAACT
CTGCCATCCCCCCATCCTGTTGactttccaaaatttcagagTTCAAATAG
CGTAAAACAAAACGACGTAATTCAAATTCCTTACCCCTTGCCCTTTCAGT
GAACTTGATGTCCAGCGCGGTGGCGATGGACCACAATGTCTCCACATCTA
CAAGACTTCATGCACGACAGATTCCATGCTGTTTGCCCCGAATTGCACTG
ATACCACCAGATAATGCCCAATTCAAGCAGAGATCAGCATGGGTATGTTT
TTGACGCCATCCATGCTGTTCTACATGACTGTACCAACAGTACCAAACCA
CCCTCTGCTACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031225XLOC_031225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049135-exon-scaffold_152-1491911889:134206..134870TCONS_00049135-exon-scaffold_152-1491911889:134206..134870Clytia hemisphaericaexon
TCONS_00049135-exon-scaffold_152-1510915933:134206..134870TCONS_00049135-exon-scaffold_152-1510915933:134206..134870Clytia hemisphaericaexon
TCONS_00049135-exon-scaffold_152-1575043694:134206..134870TCONS_00049135-exon-scaffold_152-1575043694:134206..134870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:134206..134870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.735373	1.54663	0.513227	0.913153	1.3967	1.4388	1.59647	1.41911	0.599576	0.841079	0.163739	0.377424	0.224639	0.0581815	0.20979	0.327069	0.194774	0.342138	0	0.353788	0.236648	0.116703	0.41935	1.0685	0.37001	0.238971	0.66051	0.24968	1.36806	1.54753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top