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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049131 ID=TCONS_00049131|Name=TCONS_00049131|organism=Clytia hemisphaerica|type=transcript|length=1524bp
aattaaaaggtacatattttccaaataagagCTTAGGAAGTTTGGTGCCA
ACTCCGAGTATACTATGTATCTGAGCATTGAATACCATATAGAATTATTA
CTGTCTCCTCTCTTTGTGTTCATGGCGAGTCCACGAAGGTTCTGAATTCT
TTAAGTGCCACcataatacccctgtctcagtaactcagtgaaaatttgaa
atagaccATCGGAGAAGTTATGAAACAAGTAAGACTTCACACACACCGAG
TCTGTATTTGTAATCTCTTAATTCTCGCCGGAGTACGGGAAAATTCACTT
TTATTAagcattacatgttttttttttataagcaagtgtatgccccttgg
tcaggctcgtgtatgcttaagttctcaaagcatccaggcatagtttatgc
ttattatatgcttaagaatcatgcttatgattcacccccgagccaagttt
ttaatgaaatttcagaaatttagtaaaaatttgttcagattttgggagca
gtggaatgtgtagctagccgtggaatgtcttattttttacttgacatCTA
GCAAACCTATTTTAAACAGAtgaaaatgaccacttgaaaaatattttagg
ctgacatatatgctcatgttatgcttaggaattctgcaaatctgagcctt
catatgcttataagcgttatgcttataaaaaaaacatgtattcctagaat
tcattattttttttttcaattttgactggGTCGACCTAGTTGTAGTATAG
GTGTCGAAATACCGACAGAACTCTAAAGGGCCATAACctttaaagaaaat
acttttttttgcttCGTTTTTGCATTTCTGGAATCATCCTCAAATTCTGC
GTCGATCGGNCTGGGTTGACCTAGTTGTAGTATAGGTGTCGAAATACCGA
CAGAACTCTAAAGGGCCATAACctttaaagaaaatacttttttttgcttC
GTTTTTGCATTTCTGGAATCATCCTCAAATTCTGTGTCGATCGGTAGGCA
ATTTGTAGGCACTTAAAGCAGAACCAAGGCGGCTGGAGCCtttgaaagtc
aaactttcgatgAAATTCAATGAGGTCAAAAATCTTAAAGATGCTTGGCA
GTGAAGTGTCAGTATTAGGTAATTTATTTTCATCGGGACGGATCCTTGAC
CGGGTcattgaaacaggggtgtatcgTACGTTTTCTCTTATCATTTTGTC
AACAAATTTTAGAGCCAACCAGAGCGTTATTGATAATCTTCTCTCGTCTC
TGAAGTATCTGAGATTGTTCAGTACCTGAAAtaaggagaaaacaaaaata
tacgatGATCGGATTAATTTGCTCTATTCTTTTTATCGACTCAGCTATCA
CACCCAGTATCACTGCGAAAGTAGAAAAGGTTAGTTTTTCACGGGGCATT
TGTAGCGGTCGAATGGTACTTGAGAGAGGGGTATTCAATGGACGCTAAAC
GTCAAAACAGTGTTcatttaaaatgtaaacaacGGGATATGAACACTGGG
TTTTTTTCGAGCGCAATTTCTATT Run BLAST on NCBI transcript from alignment at scaffold_152:28650..30173 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049131 ID=TCONS_00049131|Name=TCONS_00049131|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at scaffold_152:28650..30173 (Clytia hemisphaerica)
AATAGAAATTGCGCTCGAAAAAAACCCAGTGTTCATATCCCgttgtttac
attttaaatgAACACTGTTTTGACGTTTAGCGTCCATTGAATACCCCTCT
CTCAAGTACCATTCGACCGCTACAAATGCCCCGTGAAAAACTAACCTTTT
CTACTTTCGCAGTGATACTGGGTGTGATAGCTGAGTCGATAAAAAGAATA
GAGCAAATTAATCCGATCatcgtatatttttgttttctccttaTTTCAGG
TACTGAACAATCTCAGATACTTCAGAGACGAGAGAAGATTATCAATAACG
CTCTGGTTGGCTCTAAAATTTGTTGACAAAATGATAAGAGAAAACGTAcg
atacacccctgtttcaatgACCCGGTCAAGGATCCGTCCCGATGAAAATA
AATTACCTAATACTGACACTTCACTGCCAAGCATCTTTAAGATTTTTGAC
CTCATTGAATTTcatcgaaagtttgactttcaaaGGCTCCAGCCGCCTTG
GTTCTGCTTTAAGTGCCTACAAATTGCCTACCGATCGACACAGAATTTGA
GGATGATTCCAGAAATGCAAAAACGaagcaaaaaaaagtattttctttaa
agGTTATGGCCCTTTAGAGTTCTGTCGGTATTTCGACACCTATACTACAA
CTAGGTCAACCCAGNCCGATCGACGCAGAATTTGAGGATGATTCCAGAAA
TGCAAAAACGaagcaaaaaaaagtattttctttaaagGTTATGGCCCTTT
AGAGTTCTGTCGGTATTTCGACACCTATACTACAACTAGGTCGACccagt
caaaattgaaaaaaaaaataatgaattctaggaatacatgttttttttat
aagcataacgcttataagcatatgaaggctcagatttgcagaattcctaa
gcataacatgagcatatatgtcagcctaaaatatttttcaagtggtcatt
ttcaTCTGTTTAAAATAGGTTTGCTAGatgtcaagtaaaaaataagacat
tccacggctagctacacattccactgctcccaaaatctgaacaaattttt
actaaatttctgaaatttcattaaaaacttggctcgggggtgaatcataa
gcatgattcttaagcatataataagcataaactatgcctggatgctttga
gaacttaagcatacacgagcctgaccaaggggcatacacttgcttataaa
aaaaaaacatgtaatgctTAATAAAAGTGAATTTTCCCGTACTCCGGCGA
GAATTAAGAGATTACAAATACAGACTCGGTGTGTGTGAAGTCTTACTTGT
TTCATAACTTCTCCGATggtctatttcaaattttcactgagttactgaga
caggggtattatgGTGGCACTTAAAGAATTCAGAACCTTCGTGGACTCGC
CATGAACACAAAGAGAGGAGACAGTAATAATTCTATATGGTATTCAATGC
TCAGATACATAGTATACTCGGAGTTGGCACCAAACTTCCTAAGctcttat
ttggaaaatatgtaccttttaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049131-exon-scaffold_152-1491911889:28650..30173 | TCONS_00049131-exon-scaffold_152-1491911889:28650..30173 | Clytia hemisphaerica | exon |
| TCONS_00049131-exon-scaffold_152-1510915933:28650..30173 | TCONS_00049131-exon-scaffold_152-1510915933:28650..30173 | Clytia hemisphaerica | exon |
| TCONS_00049131-exon-scaffold_152-1575043694:28650..30173 | TCONS_00049131-exon-scaffold_152-1575043694:28650..30173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_152 | supercontig | scaffold_152:28650..30173 . |
Blast
The following BLAST results are available for this feature:
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