TCONS_00049120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049120
Unique NameTCONS_00049120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049120 ID=TCONS_00049120|Name=TCONS_00049120|organism=Clytia hemisphaerica|type=transcript|length=1415bp
ATTCCGTACCGTATGATATACGCTGTGGTTAGTTTGGATGCAGTGACCTT
GTATGATACACAGCACTCGATGCCCATCGGATATTGTGCAAACATGCATT
ATGCCTCACTCACAGACGCTACTTGGTCGTCGGACGGTCGTTTGTTAGTA
ATCTCCTCCACAGACGGATATTGTTCTTTCATCAAGTTCGACGAAGGAGA
GCTTGGCACTCCAATCACTTTTGATCCCATCGAATACCAAGACACCCAAC
TAAAGATTCGAGCCGCACAACGCAAAGAAGCCAAGAAAAAAGAATCTGAG
CAACGACGCAAAGAGAAAGCTGAAGAAAAAGCTGCCAAGAAAGCAGAGGA
AAAAGCCGCAGCGGCCGCTCTCTTGGCTAGTTCCCAGGCCACTTCATCAC
AGAATTTAGATGATAAACAACCCGATGGTGAAATTGATGCCAAGACACCG
AAATCAAGCAAACCGGTTCTCGATAAAAATCAGCCGACCatcgaaaaact
ttttgtgacacCTGTTCGAAAACGGAAGCGAACTTCCGAAATGTCGCCCA
CCATTACACCGAAAAATGAAGgtagcACGACTAAATGTCCATCTACGCCC
CAAAACACGCCCGCTTCAACCACCACTTCCACCAGCAATAAAACCCAACA
ACCCAAAGTCGATTCCCTTTTAAAATCCGTGAAAACAACTCTCCAACAAA
CCGGTGATAAAAAGACTCCTAAAAGAGCAACCGTTACCACGCTGCTATCT
TTCTCTAACAAAGCCAATTCATCCGAAAAGAAACCGGTTGCCAAACCTCC
AACTGTAAAAACACCAAAGCGGGTTACGGCGACCACTTTATTGACTTTCG
GGAAAAGTGACTCAGCACCNAAGCCGACTCATCCGAAAAGAAACCGGTTG
CCAAACCGCCAACTGTAAAAACACCGAAGCGGGTTACGGCGACCACTTTA
TTGACTTTCGGGAAAAGTGACTCGGCACTTTCTAGCGAAATCATCAAAGA
CAATCAAGAGATTTTGAAATCACCCGTCGAAGTCAAATCACCTTTACCTG
AACCCTCAACTGTTCACGCGTCATCCCAGCAACCGCCTACTACGCCCAAA
TCAGTCCGTGGTACCGCCCATGCTCAAACACCGCCCCGAGGATCACCAAA
CAACAACCGCCCACCGAAGCGTGTACACGTGACTACTCTCCAAACGTTCA
ACACCTCTTCTTCTTCATCCGACACTACTAAGAAAGaatcctCTGAATCG
TCGAAATCGTCCGAAAGCAAACCAGTGGAGACGATCGTTATTGATTGATT
TCAAAGCGTTAATTTTTTCGTTTgtaataaacctttttttttcatttgta
tctatttctcttcttttgtttaataATAATATGCATCaatagaaaaatta
ttttaagccTCCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_152:81579..86008-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049120 ID=TCONS_00049120|Name=TCONS_00049120|organism=Clytia hemisphaerica|type=transcript|length=4430bp|location=Sequence derived from alignment at scaffold_152:81579..86008- (Clytia hemisphaerica)
ATTCCGTACCGTATGATATACGCTGTGGTTAGTTTGGATGCAGTGACCTT
GTATGATACACAGCACTCGATGCCCATCGGATATTGTGCAAACATGCATT
ATGCCTCACTCACAGACGCTACTTGGTATGTATAATCTTTCGTCTTTTAA
AACCTGAAGCCTCTTGACTGATAAATGTCAGATTCGATCATACTTTTCAC
GTTCTAGGTTATATACTACCATGTGCCTATTAAACACCCCGCTTGATAAT
TTTTCGATTTTTTTTCGAACCCTGGGACCTCATTAGGAAACTTCCGTCGA
TTGATTTTTCTTAATATTTTCATTTCAGCTATCAAAAGATAAGTCCCTTA
TTTCCCTCTAAATAGCCATTTTTAGTCAATAATAACTTTATTTTGGGGTA
TTTTGTGCTACAATTTCCCATTTCCCAATGAAATTTGTAGATCTTTTCAG
CTCGGTTAGTAAGTTTTATGCTAATTTGTAGGTCGTCGGACGGTCGTTTG
TTAGTAATCTCCTCCACAGACGGATATTGTTCTTTCATCAAGTTCGACGA
AGGAGAGCTTGGCACTCCAATCACTTTTGATCCCATCGAATACCAAGACA
CCCAACTAAAGATTCGAGCCGCACAACGCAAAGAAGCCAAGAAAAAAGAA
TCTGAGCAACGACGCAAAGAGAAAGCTGAAGAAAAAGCTGCCAAGAAAGC
AGAGGAAAAAGCCGCAGCGGCCGCTCTCTTGGCTAGTTCCCAGGCCACTT
CATCACAGAATTTAGATGATAAACAACCCGATGGTGAAAGTAAGTGAATC
ATTTTTATACAGAGAATAAGATTATGCAAATACTGTGTGTAAATATTTGG
ACGTTCTTGTTGTCTCTATTGTCATTTGCTTCATATAAATGAATTTGAAT
TCTCTTTTGCATTAAAATTTTCGGAAATTTATCTTTTTTGGCTCATTCAA
AGGTAGAATCTATTTTGATACTTTTTTTGGGCCTTATTCCTCTCTCTGAA
AAAAAATCTTCTCCCAGAAATTGTTGTCACGAGCCCTAAGGTGTGGCCCC
TTTCTACATTATATGAAAATCTAATAATTCCATTGTTCTTTTTACAATTG
TTCTAAAAAGTAATTTTTCTTATACTACTTCTTTGCTCCAGAAAATCCTG
TTCTTCCCACAGTTGATGCCAAGACACCGAAATCAAGCAAACCGGTTCTC
GATAAAAATCAGCCGACCATCGAAAAACTTTTTGTGACACCTGTTCGAAA
ACGGAAGCGAACTTCCGAAATGTCGCCCACCATTACACCGAAAAATGAAG
GTACGGAGTCTTGTTATTATAGTCTTGTTACTTATAATCGAGCGTTTCAT
ACTACAATGGAGTCTCCAAAACTCCAACTCGCACGGGAAACACAAGTTTG
TTCCGGTTTTAGAAATTTCGAGTTATGGAGTAAATTTTATAAGACATTGT
TAACTGAAGGGACGAGAAAACTTTTTGAGATGAAGAGTTTTTATTGTAGA
TATTTTGAAATCAATGTTTTGGAAGATCATTATAGAATCGATCGTTTGGT
TAGTCCTTCTACTCTTACTTCAATAAATGTTCTCAGGCTTCTCCATGATG
TTCCAGAATACCATTATCNATCATTATAGAATCGATCGTTTGGTTAGTCC
TTCTACTCTTACTTCAATAAATGTTCTCAGGCTTCTCCACCATTCTTATT
CAATCATGTTCTGTGTTAATGTCCAATTAGTTTTGTCATCGTCAACATTA
TAATAGTTAATTCATGGTTAAGTTTGATCGTCTGATGAAGGTTTGTGTGA
CCAATACTGTCGAATCTTGGTGAACGAAACCAAGTAGATTATAGGATTAG
AAAGTCCGTAGGTTCGTTGGAAGAAAACAATGACCCAAAATGCTGAGGTG
ACAGTTTCTTTTGAACCAAAGGCAAGGATGAAGAAGGATACTGAAATAGG
GGAGAAAAAGCAACAAGTCCAGAAATTTAACCGAACAATATCGATGATAG
TTTGCTTGAGTTTTTTAATCATATCCAATTCCTCAGCTTTTTCTCCGTGA
ATATTAATTAAACTCTTTATACGCGACTCATTACTATCGCGTATAACCAT
GGTCATCTTGCCCAGCACCGCAATAATGACACATGTCATTGTGCCCACAC
TGCCAGCATACAACCATACTTGTCTGTTGGCAACGAACACTTCTCCTTTA
GTGACCTCTTGGTATCCCATGCTATAGAACAAACCCCTGATCACTATAAC
ATTCAACAAGCCGNACCTCTTGGTATCCCATGCTATAGAACAAACCACTG
ATCACTATAACATTCAACAAACCTATTAAAAGGATAGTGTAAGCAAGCCT
TCGTTTTGTAACCATAGCTTTGTAGTGTAAAGCGTACTTTACTGCCAATG
CTCGATCCACCGCTATAATCAGTGTGATGTTGATTGACAGGAAATAAAGC
GAAATATTGAGCAATGAAAAAGCTACGCTACCTCTCGTGAGCATTTCATG
GTGTCCAGTAAGTTTCAATGGAAGGATTACCAGGGCAAGTATAGGTATTG
CCGAATCCACCAATGATAACATTTGGAGGAGAAAATATTGATTGTTTCTT
AACCTTGCTTTGTATATGGTATATTGTACGAGAAGATGTAAAGCTAAAGT
GATCAGGTGTAAAACAACAATGATAGACGGTACAAGTAATTTAATCATGT
CTCTTTTCTAAGGAAAGTTGATTTGTGTAATGACCGGTTGTTACTTCTTC
AAACTTTTCTACCCACCAATCTTCATGAATGAAAAATAACCCCCTCTAAT
CTAAGAGTCCTTGTACTTAGTTTTTTTATTGTGATATCGAATTTGATATT
TGGTAATAAAAATTGAAATGGAAAATTTTAGCATAAAATATAATAGTTTT
GAAGTTTGGATACTTTTTATTGTTTCAAAATCGAATTGCACATTTTCTTC
TTTGAAAAAATAAACGGGATTTGATATTGCAAATTTTTGGTTCGGGAGAA
GAGAAAGTCTTTCAAGGTTGATGGTGAAAGGAGGTGTGAAAATCGTCTTA
CAATGGAAACTCAGCAATTGTGATATATTTGACTTCGAGAACTTTGAGAT
TCGGATCTAAAATTTATTGTTTTGCCAAAACATTTTAAAGAAAAATAGAC
CTTTCGAAAAGTTTCAAAAATGAAATCCATTGATATATATAGTAACTGGC
AAACTTTTTTATTTTTAGGTAGCACGACTAAATGTCCATCTACGCCCCAA
AACACGCCCGCTTCAACCACCACTTCCACCAGCAATAAAACCCAACAACC
CAAAGTCGATTCCCTTTTAAAATCCGTGAAAACAACTCTCCAACAAACCG
GTGATAAAAAGACTCCTAAAAGAGCAACCGTTACCACGCTGCTATCTTTC
TCTAACAAAGCCAATTCATCCGAAAAGAAACCGGTTGCCAAACCTCCAAC
TGTAAAAACACCAAAGCGGGTTACGGCGACCACTTTATTGACTTTCGGGA
AAAGTGACTCAGCACCNAAGCCGACTCATCCGAAAAGAAACCGGTTGCCA
AACCGCCAACTGTAAAAACACCGAAGCGGGTTACGGCGACCACTTTATTG
ACTTTCGGGAAAAGTGACTCGGCACTTTCTAGCGAAATCATCAAAGACAA
TCAAGAGATTTTGAAATCACCCGTCGAAGTCAAATCACCTTTACCTGAAC
CCTCAACTGTTCACGCGTCATCCCAGCAACCGCCTACTACGCCCAAATCA
GTCCGTGGTACCGCCCATGCTCAAACACCGCCCCGAGGATCACCAAACAA
CAACCGCCCACCGAAGCGTGTACACGTGACTACTCTCCAAACGTTCAACA
CCTCTTCTTCTTCATCCGACACTACTAAGAAAGGTTAGCCTCCTTTACCA
ACCTGGCCCTACATACAATTCTTAAGTTTTTTTCTACCTGCAGCTCTAAT
CGATTTGACTTTCAAAATAAATACGTTGCACATATGTATAAATGATATGA
AATAAAATGAATAGAAATGATGGAAATCTCGACGTAAGGTTCCCACTACA
TTCTTTGCCCTTACACCTTCGAAAAATGGATAAAGGGTTAGAAATCGCTA
TGTACCAGAGTGTATCTCACGTGTACCGTACGCCAATGAATTTCCTTAGA
TATGGGCTCTGTTTTAGATTCAAGTTTACGCGTTTGGTAAGGCATTGGTA
ACATACTAACGTAACTGATTCCATTGTTTTCATTGTTTTTTTCATTTTTA
GAATCCTCTGAATCGTCGAAATCGTCCGAAAGCAAACCAGTGGAGACGAT
CGTTATTGATTGATTTCAAAGCGTTAATTTTTTCGTTTGTAATAAACCTT
TTTTTTTCATTTGTATCTATTTCTCTTCTTTTGTTTAATAATAATATGCA
TCAATAGAAAAATTATTTTAAGCCTCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031216XLOC_031216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049120-exon-scaffold_152-1575043694:85884..86008TCONS_00049120-exon-scaffold_152-1575043694:85884..86008Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1575043694:85220..85527TCONS_00049120-exon-scaffold_152-1575043694:85220..85527Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1575043694:84709..84846TCONS_00049120-exon-scaffold_152-1575043694:84709..84846Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1575043694:82126..82790TCONS_00049120-exon-scaffold_152-1575043694:82126..82790Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1575043694:81579..81757TCONS_00049120-exon-scaffold_152-1575043694:81579..81757Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1510915933:85884..86008TCONS_00049120-exon-scaffold_152-1510915933:85884..86008Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1510915933:85220..85527TCONS_00049120-exon-scaffold_152-1510915933:85220..85527Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1510915933:84709..84846TCONS_00049120-exon-scaffold_152-1510915933:84709..84846Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1510915933:82126..82790TCONS_00049120-exon-scaffold_152-1510915933:82126..82790Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1510915933:81579..81757TCONS_00049120-exon-scaffold_152-1510915933:81579..81757Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1491911889:85884..86008TCONS_00049120-exon-scaffold_152-1491911889:85884..86008Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1491911889:85220..85527TCONS_00049120-exon-scaffold_152-1491911889:85220..85527Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1491911889:84709..84846TCONS_00049120-exon-scaffold_152-1491911889:84709..84846Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1491911889:82126..82790TCONS_00049120-exon-scaffold_152-1491911889:82126..82790Clytia hemisphaericaexon
TCONS_00049120-exon-scaffold_152-1491911889:81579..81757TCONS_00049120-exon-scaffold_152-1491911889:81579..81757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:81579..86008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63556	0.379435	1.58668	0	1.6915	1.07514	0	0	0.42596	1.35668	1.56158	0	3.37821e-10	3.62907	0.988097	0.422492	1.86765	1.91843	0.00810319	0	0.043993	0.534508	0.85331	0.993733	1.76533	1.73546	0.000369337	0.468999	0	0
Blast
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BLAST of TCONS_00049120 vs. Swiss-Prot (Human)
Match: CAF1B (Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.006e-25
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 IPYRMIYAVVSLDAVTLYDTQHSMPIGYCANMHYASLTDATWSSDGRLLVISSTDGYCSFIKFDEGELGTPITFDPI 231
            +PYR+++AV S D+V LYDTQ S P GY +N+HY +L+D +WSSDG  L ISSTDGYCSF+ F++ ELG P+   P+
Sbjct:  313 LPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPV 389
The following BLAST results are available for this feature:
BLAST of TCONS_00049120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAF1B2.006e-2557.14Chromatin assembly factor 1 subunit B OS=Homo sapi... [more]
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