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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049119 ID=TCONS_00049119|Name=TCONS_00049119|organism=Clytia hemisphaerica|type=transcript|length=694bp
TCATGATTGTTGGGCATACAAAGTTCAGCTGCGACAGGTGTTTCGGTAGC
TTCAAGAAGAAGTTGAGGAAAACGTATGTTTCATCCCTGTACGAAATTGC
CGATGTCTGTGATGGCACCATGTGTAACTTTGCCGTTCTTGTCGGAAATC
ACAACAAGGACATGACCGTAAAGACGTACGATTGGTCGCATCACTTTGAA
ACAACCCTGAATTTCAAGAAGCTCAAGGACATGCTAAAGTACCATCATTT
TCGCATGTCAAAAGATGAACCGGGGATTGTATCATGCTATGAGACTCTGG
ATTCAGAACCAGTAAAAATCTCGGTTTTTAAAACGCGTAAACCACCAGTT
GTAACAGCAGAGCTACCAGATATTGTGGAACCAAAGGGGTTTACCCAAGC
ACGCGCAGAATATCTTCGGAAAGAAATacgtcaattttgtaaacatggcA
CTGAAGATTTGGCTGCTCCTTGAACTTGGATTGAGATGATTATActgctt
tttatatttttctttttagtgttgaAACAGTTTCATGCTGTATATAGTTC
CTTTCCATAGCATAGCATTGCATTGTCCATTTTCCAAACTGGACTCCACC
ATCAGTTCATTCTTTGTTATTAActctgaaaatgaagaaaagcaTTGTAA
AAATACTCATAGGGTAGTGGTACTGTCAGTCCAGCCATCTTTCC Run BLAST on NCBI protein sequence of TCONS_00049119-protein >TCONS_00049119-protein ID=TCONS_00049119-protein|Name=TCONS_00049119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MIVGHTKFSCDRCFGSFKKKLRKTYVSSLYEIADVCDGTMCNFAVLVGNH
NKDMTVKTYDWSHHFETTLNFKKLKDMLKYHHFRMSKDEPGIVSCYETLD
SEPVKISVFKTRKPPVVTAELPDIVEPKGFTQARAEYLRKEIRQFCKHGT
EDLAAP Run BLAST on NCBI transcript from alignment at scaffold_152:141301..142623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049119 ID=TCONS_00049119|Name=TCONS_00049119|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_152:141301..142623+ (Clytia hemisphaerica)
TCATGATTGTTGGGCATACAAAGTTCAGCTGCGACAGGTTCTACATACTT
TTCTCTTCTAAATTCCTCGAAGATATTTTTTGAGACAGAGGTTTAAGCTG
GGTTACCTTGCAACTTTTGGAAGAAAATAATGGGAAAATAATGCTAGAGC
ATATTCATCACCAGCACCTCCAATTTATGAGCATCTCTGTACGAGTTGAG
GATAAAAATATCACAAAACTGTTACAAGTTTTCCTAACTTTAATTTAACC
TCATTTTTCGGGTGACTCTTCTAATTTTGATGATGTCAGTATTCAAAAAT
CTTGAGCTCTCTATAAAAATGCAAAGTAACCCCCTCCTACATTTAAAACA
TGAAAgagtataaaatttccataGCTTATTATCCTTTTTTATTTCTCGTC
TCATGAAGAATCCACCCGCCAAATTATTACACAAACGCAATTAAACTCTA
TACTACAAGCCATAAGATTCTAATTGTTATCTAAGATATATTGTGCGTAT
ACCTATCATAATCATAAAATAGTATATACCcattatatataatataagtG
TTTATACGATATCATGAAGCCAtcatttgcaatttttgttgtgtcaaaaa
attaaaagtctcTACTGTACATTATcgaattttccaattttatttAACCA
TTCAATTTCTTTGAAGGTGTTTCGGTAGCTTCAAGAAGAAGTTGAGGAAA
ACGTATGTTTCATCCCTGTACGAAATTGCCGATGTCTGTGATGGCACCAT
GTGTAACTTTGCCGTTCTTGTCGGAAATCACAACAAGGACATGACCGTAA
AGACGTACGATTGGTCGCATCACTTTGAAACAACCCTGAATTTCAAGAAG
CTCAAGGACATGCTAAAGTACCATCATTTTCGCATGTCAAAAGATGAACC
GGGGATTGTATCATGCTATGAGACTCTGGATTCAGAACCAGTAAAAATCT
CGGTTTTTAAAACGCGTAAACCACCAGTTGTAACAGCAGAGCTACCAGAT
ATTGTGGAACCAAAGGGGTTTACCCAAGCACGCGCAGAATATCTTCGGAA
AGAAATacgtcaattttgtaaacatggcACTGAAGATTTGGCTGCTCCTT
GAACTTGGATTGAGATGATTATActgctttttatatttttctttttagtg
ttgaAACAGTTTCATGCTGTATATAGTTCCTTTCCATAGCATAGCATTGC
ATTGTCCATTTTCCAAACTGGACTCCACCATCAGTTCATTCTTTGTTATT
AActctgaaaatgaagaaaagcaTTGTAAAAATACTCATAGGGTAGTGGT
ACTGTCAGTCCAGCCATCTTTCC Coding sequence (CDS) from alignment at scaffold_152:141301..142623+ >TCONS_00049119 ID=TCONS_00049119|Name=TCONS_00049119|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_152:141301..142623+ (Clytia hemisphaerica)
ATGATTGTTGGGCATACAAAGTTCAGCTGCGACAGGTGTTTCGGTAGCTT
CAAGAAGAAGTTGAGGAAAACGTATGTTTCATCCCTGTACGAAATTGCCG
ATGTCTGTGATGGCACCATGTGTAACTTTGCCGTTCTTGTCGGAAATCAC
AACAAGGACATGACCGTAAAGACGTACGATTGGTCGCATCACTTTGAAAC
AACCCTGAATTTCAAGAAGCTCAAGGACATGCTAAAGTACCATCATTTTC
GCATGTCAAAAGATGAACCGGGGATTGTATCATGCTATGAGACTCTGGAT
TCAGAACCAGTAAAAATCTCGGTTTTTAAAACGCGTAAACCACCAGTTGT
AACAGCAGAGCTACCAGATATTGTGGAACCAAAGGGGTTTACCCAAGCAC
GCGCAGAATATCTTCGGAAAGAAATacgtcaattttgtaaacatggcACT
GAAGATTTGGCTGCTCCTTGAATGATTGTTGGGCATACAAAGTTCAGCTG
CGACAGGTGTTTCGGTAGCTTCAAGAAGAAGTTGAGGAAAACGTATGTTT
CATCCCTGTACGAAATTGCCGATGTCTGTGATGGCACCATGTGTAACTTT
GCCGTTCTTGTCGGAAATCACAACAAGGACATGACCGTAAAGACGTACGA
TTGGTCGCATCACTTTGAAACAACCCTGAATTTCAAGAAGCTCAAGGACA
TGCTAAAGTACCATCATTTTCGCATGTCAAAAGATGAACCGGGGATTGTA
TCATGCTATGAGACTCTGGATTCAGAACCAGTAAAAATCTCGGTTTTTAA
AACGCGTAAACCACCAGTTGTAACAGCAGAGCTACCAGATATTGTGGAAC
CAAAGGGGTTTACCCAAGCACGCGCAGAATATCTTCGGAAAGAAATacgt
caattttgtaaacatggcACTGAAGATTTGGCTGCTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049119-exon-scaffold_152-1491911889:141301..141337 | TCONS_00049119-exon-scaffold_152-1491911889:141301..141337 | Clytia hemisphaerica | exon |
| TCONS_00049119-exon-scaffold_152-1510915933:141301..141337 | TCONS_00049119-exon-scaffold_152-1510915933:141301..141337 | Clytia hemisphaerica | exon |
| TCONS_00049119-exon-scaffold_152-1575043694:141301..141337 | TCONS_00049119-exon-scaffold_152-1575043694:141301..141337 | Clytia hemisphaerica | exon |
| TCONS_00049119-exon-scaffold_152-1491911889:141967..142623 | TCONS_00049119-exon-scaffold_152-1491911889:141967..142623 | Clytia hemisphaerica | exon |
| TCONS_00049119-exon-scaffold_152-1510915933:141967..142623 | TCONS_00049119-exon-scaffold_152-1510915933:141967..142623 | Clytia hemisphaerica | exon |
| TCONS_00049119-exon-scaffold_152-1575043694:141967..142623 | TCONS_00049119-exon-scaffold_152-1575043694:141967..142623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_152 | supercontig | scaffold_152:141301..142623 + |
Blast
The following BLAST results are available for this feature:
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