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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049115 ID=TCONS_00049115|Name=TCONS_00049115|organism=Clytia hemisphaerica|type=transcript|length=658bp
AACCTTTCTTAGTAGTGTCGGATGAAGAAGAAGAGGTGTTGAACGTTTGG
AGAGTAGTCACGTGTACACGCTTCGGTGGGCGGTTGTTGTTTGGTGATCC
TCGGGGCGGTGTTTGAGCATGGGCGGTACCACGGACTGATTTGGGCGTAG
TAGGCGGTTGCTGGGATGACGCGTGAACAGTTGAGGGTTCAGGTAAAGGT
GATTTGACTTCGACGGGTGATTTCAAAATCTCTTGATTGTCTTTGATGAT
TTCGCTAGAAAGTGCTGAGTCACTTTTCCCGAAAGTCAATAAAGTGGTCG
CCGTAACCCGCTTTGGTGTTTTTACAGTTGGAGGTTTGGCAACCGGTTTC
TTTTCGGATGAATTGGCTTTGTTAGAGAAAGATAGCAGCGTGGTAACGGT
TGCTCTTTTAGGAGTCTTTTTATCACCGGTTTGTTGGAGAGTTGTTTTCA
CGGATTTTAAAAGGGAATCGACTTTGGGTTGTTGGGTTTTATTGCTGGTG
GAAGTGGTGGTTGAAGCGGGCGTGTTTTGGGGCGTAGATGGACATTTAGT
CGTgctacctaaaaataaaaaagtttgccaGTTACTATATATATCAatgg
atttcatttttgaaacttttcgaaaggtctatttttctttaaaatgtttt
ggcAAAAC Run BLAST on NCBI transcript from alignment at scaffold_152:82123..82890+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049115 ID=TCONS_00049115|Name=TCONS_00049115|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at scaffold_152:82123..82890+ (Clytia hemisphaerica)
AACCTTTCTTAGTAGTGTCGGATGAAGAAGAAGAGGTGTTGAACGTTTGG
AGAGTAGTCACGTGTACACGCTTCGGTGGGCGGTTGTTGTTTGGTGATCC
TCGGGGCGGTGTTTGAGCATGGGCGGTACCACGGACTGATTTGGGCGTAG
TAGGCGGTTGCTGGGATGACGCGTGAACAGTTGAGGGTTCAGGTAAAGGT
GATTTGACTTCGACGGGTGATTTCAAAATCTCTTGATTGTCTTTGATGAT
TTCGCTAGAAAGTGCCGAGTCACTTTTCCCGAAAGTCAATAAAGTGGTCG
CCGTAACCCGCTTCGGTGTTTTTACAGTTGGCGGTTTGGCAACCGGTTTC
TTTTCGGATGAGTCGGCTTNGGTGCTGAGTCACTTTTCCCGAAAGTCAAT
AAAGTGGTCGCCGTAACCCGCTTTGGTGTTTTTACAGTTGGAGGTTTGGC
AACCGGTTTCTTTTCGGATGAATTGGCTTTGTTAGAGAAAGATAGCAGCG
TGGTAACGGTTGCTCTTTTAGGAGTCTTTTTATCACCGGTTTGTTGGAGA
GTTGTTTTCACGGATTTTAAAAGGGAATCGACTTTGGGTTGTTGGGTTTT
ATTGCTGGTGGAAGTGGTGGTTGAAGCGGGCGTGTTTTGGGGCGTAGATG
GACATTTAGTCGTgctacctaaaaataaaaaagtttgccaGTTACTATAT
ATATCAatggatttcatttttgaaacttttcgaaaggtctatttttcttt
aaaatgttttggcAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049115-exon-scaffold_152-1491911889:82123..82383 | TCONS_00049115-exon-scaffold_152-1491911889:82123..82383 | Clytia hemisphaerica | exon |
| TCONS_00049115-exon-scaffold_152-1510915933:82123..82383 | TCONS_00049115-exon-scaffold_152-1510915933:82123..82383 | Clytia hemisphaerica | exon |
| TCONS_00049115-exon-scaffold_152-1575043694:82123..82383 | TCONS_00049115-exon-scaffold_152-1575043694:82123..82383 | Clytia hemisphaerica | exon |
| TCONS_00049115-exon-scaffold_152-1491911889:82494..82890 | TCONS_00049115-exon-scaffold_152-1491911889:82494..82890 | Clytia hemisphaerica | exon |
| TCONS_00049115-exon-scaffold_152-1510915933:82494..82890 | TCONS_00049115-exon-scaffold_152-1510915933:82494..82890 | Clytia hemisphaerica | exon |
| TCONS_00049115-exon-scaffold_152-1575043694:82494..82890 | TCONS_00049115-exon-scaffold_152-1575043694:82494..82890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_152 | supercontig | scaffold_152:82123..82890 + |
Blast
The following BLAST results are available for this feature:
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