TCONS_00049102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049102
Unique NameTCONS_00049102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049102 ID=TCONS_00049102|Name=TCONS_00049102|organism=Clytia hemisphaerica|type=transcript|length=465bp
gttttatcattgtttttctgctggactacataattattcaacggggtggc
ctctttgaaaaaaggtctattaaaaacttcaaaaaaaaattgttaaagaT
AAAGGAAAAGGTCTTTCCACCCATATCCAAGCAATAATATTATCTGAAAA
CAAAATACTTTACTACACCTTCTTACCTTAAGTTGTCCAACAAACATGAA
AAATTCCACTGCATTATtggcagccattttgtttttttgttcttgATGTT
CTTTAGTCAGTTTTCAAATCTCAGGGAACACAATGTACTTTTGGCGATTC
TTTATACCTAagtaaggggtcactcacaaatcgattttaagttcAAATAA
CGTCATATGCAGATATGACGTTTGTGGGTGGGTGGGTCAAGGTAGGATGA
CGCTTTGAATGGGTTataaaaaacatcgattttGAGATAATGatctcttt
tctattttttatagc
Run BLAST on NCBI

transcript from alignment at scaffold_151:156387..156851

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049102 ID=TCONS_00049102|Name=TCONS_00049102|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_151:156387..156851 (Clytia hemisphaerica)
gctataaaaaatagaaaagagatCATTATCTCaaaatcgatgttttttat
AACCCATTCAAAGCGTCATCCTACCTTGACCCACCCACCCACAAACGTCA
TATCTGCATATGACGTTATTTgaacttaaaatcgatttgtgagtgacccc
ttactTAGGTATAAAGAATCGCCAAAAGTACATTGTGTTCCCTGAGATTT
GAAAACTGACTAAAGAACATcaagaacaaaaaaacaaaatggctgccaAT
AATGCAGTGGAATTTTTCATGTTTGTTGGACAACTTAAGGTAAGAAGGTG
TAGTAAAGTATTTTGTTTTCAGATAATATTATTGCTTGGATATGGGTGGA
AAGACCTTTTCCTTTAtctttaacaatttttttttgaagtttttaataga
ccttttttcaaagaggccaccccgttgaataattatgtagtccagcagaa
aaacaatgataaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031207XLOC_031207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049102-exon-scaffold_151-1491911889:156387..156851TCONS_00049102-exon-scaffold_151-1491911889:156387..156851Clytia hemisphaericaexon
TCONS_00049102-exon-scaffold_151-1510915933:156387..156851TCONS_00049102-exon-scaffold_151-1510915933:156387..156851Clytia hemisphaericaexon
TCONS_00049102-exon-scaffold_151-1575043694:156387..156851TCONS_00049102-exon-scaffold_151-1575043694:156387..156851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:156387..156851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505786	0.312671	0.177364	0.463174	0.953348	1.22829	1.82997	2.62054	3.67226	2.2355	3.1509	2.37157	1.52478	1.95043	0.347901	0.360253	0.343035	0.682732	1.40138	0.343675	0.712151	0.231528	0.371596	0.162459	4.16619	2.96092	0.23545	0.707716	0.386393	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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