TCONS_00049077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049077
Unique NameTCONS_00049077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049077 ID=TCONS_00049077|Name=TCONS_00049077|organism=Clytia hemisphaerica|type=transcript|length=256bp
NNACTGAAAAAAACACTACCATGGATTCGCAATATGTATTTCAATCTGGT
CAATTTACGTCAGTTTACTTTTACTGGTTGGAAAACAAATTTAGCAAACC
GGATTGATATTTTTGAGTTTGAGACTTAAAATCAAATGGAATTTTACTCA
TTTGCTTTAGAGTNATGTCGTTTAATCTACTCTCGGATACCTAAAAGCCG
GGGCgctataattaatttttcgaaaattttccatccaggatatttttatt
ccaccc
Run BLAST on NCBI

transcript from alignment at scaffold_150:19742..19997

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049077 ID=TCONS_00049077|Name=TCONS_00049077|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_150:19742..19997 (Clytia hemisphaerica)
gggtggaataaaaatatcctggatggaaaattttcgaaaaattaattata
gcGCCCCGGCTTTTAGGTATCCGAGAGTAGATTAAACGACATNACTCTAA
AGCAAATGAGTAAAATTCCATTTGATTTTAAGTCTCAAACTCAAAAATAT
CAATCCGGTTTGCTAAATTTGTTTTCCAACCAGTAAAAGTAAACTGACGT
AAATTGACCAGATTGAAATACATATTGCGAATCCATGGTAGTGTTTTTTT
CAGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031185XLOC_031185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049077-exon-scaffold_150-1491911889:19742..19997TCONS_00049077-exon-scaffold_150-1491911889:19742..19997Clytia hemisphaericaexon
TCONS_00049077-exon-scaffold_150-1510915933:19742..19997TCONS_00049077-exon-scaffold_150-1510915933:19742..19997Clytia hemisphaericaexon
TCONS_00049077-exon-scaffold_150-1575043694:19742..19997TCONS_00049077-exon-scaffold_150-1575043694:19742..19997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:19742..19997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.46741	1.54626	4.70605	1.48751	0.897311	5.04031	7.53151	7.39159	16.2498	8.50408	0.932242	0.819395	0.552552	1.27591	3.77135	2.4769	1.48385	6.72523	1.33595	3.20417	0	3.47006	0.749347	1.33755	3.74947	0	6.19727	2.36776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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