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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049065 ID=TCONS_00049065|Name=TCONS_00049065|organism=Clytia hemisphaerica|type=transcript|length=946bp
AATATTCTCCTCAAACAAAATTCTCATGACTCCACCAAACAAACACAACA
ATCTACTAAACCTAAAGAAACATCTACTACTAAGTCTAAGACTGCCGAAC
AAGCACCTTCAAAAGCTTTGGGATGTGGAGAATTCTTGTGGAAGTTGGAG
ATTGCAAAGGTTGGCTACCCTCCTCGAATGTTGTCAAAAGCAATGTTTTA
TTCTTCGTCTACTGGTTATCATTTCATGATTGTTTATATCAAAGAAATAG
AATCtcatgtttccattttatttCGAATCATTGAAGGATGGAATGATGCT
TCTTTGCAATGGCCTTTGAAAGCGAAGATTAAAATTTCACTCGTCAAAGG
AgaaactgataaaaacaaagtgaCTTTTCCTTACAATGGATAGTAAACCT
GATGCAGGTATCTTCAAAAGACCGAATGTGAATCCACAATCAATGTCGTC
GTCGGTAGCTGTTGAAATTCCATATTTTCTTCAACACAATGCTTTGAGCA
GTTTCATATCGAATAATAAACTGACCATCAAAGTTAACCTCACTCAAATC
AAGGATTCAAATTTGAGAAATTATCAAATTAAACCTTGCACTGGTGCGAG
ATTCGAAAGATTAGTGTTTTTACAAGGcaacaaatgattttattttagat
ttttataatTGGTAAGCCATGGCTATCAATGCGATTCTGGTTATCCAATA
TCTCAAATATTGCTGAATGGGAATTTAAACTTGACTTACATTTTCTTTTT
accaaaaagttttatttgtaaCGTACATTTTTTATCACTCAGAGTTTTCt
gtaaatattttcaacaaaCAAAACAGTTAGTGTCAAAAACAGACATATGG
TCATGATTAGGCTTTTAACATATAAGGTTGGTTCTCTGGTATTACGAGTT
ACTTTTATTTTAAGATGGAATACATTCTCTGAGGAGTTTATAGATC Run BLAST on NCBI protein sequence of TCONS_00049065-protein >TCONS_00049065-protein ID=TCONS_00049065-protein|Name=TCONS_00049065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
NILLKQNSHDSTKQTQQSTKPKETSTTKSKTAEQAPSKALGCGEFLWKLE
IAKVGYPPRMLSKAMFYSSSTGYHFMIVYIKEIESHVSILFRIIEGWNDA
SLQWPLKAKIKISLVKGETDKNKVTFPYNG Run BLAST on NCBI transcript from alignment at scaffold_15:509470..510415 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049065 ID=TCONS_00049065|Name=TCONS_00049065|organism=Clytia hemisphaerica|type=transcript|length=946bp|location=Sequence derived from alignment at scaffold_15:509470..510415 (Clytia hemisphaerica)
GATCTATAAACTCCTCAGAGAATGTATTCCATCTTAAAATAAAAGTAACT
CGTAATACCAGAGAACCAACCTTATATGTTAAAAGCCTAATCATGACCAT
ATGTCTGTTTTTGACACTAACTGTTTTGtttgttgaaaatatttacaGAA
AACTCTGAGTGATAAAAAATGTACGttacaaataaaactttttggtAAAA
AGAAAATGTAAGTCAAGTTTAAATTCCCATTCAGCAATATTTGAGATATT
GGATAACCAGAATCGCATTGATAGCCATGGCTTACCAattataaaaatct
aaaataaaatcatttgttgCCTTGTAAAAACACTAATCTTTCGAATCTCG
CACCAGTGCAAGGTTTAATTTGATAATTTCTCAAATTTGAATCCTTGATT
TGAGTGAGGTTAACTTTGATGGTCAGTTTATTATTCGATATGAAACTGCT
CAAAGCATTGTGTTGAAGAAAATATGGAATTTCAACAGCTACCGACGACG
ACATTGATTGTGGATTCACATTCGGTCTTTTGAAGATACCTGCATCAGGT
TTACTATCCATTGTAAGGAAAAGtcactttgtttttatcagtttcTCCTT
TGACGAGTGAAATTTTAATCTTCGCTTTCAAAGGCCATTGCAAAGAAGCA
TCATTCCATCCTTCAATGATTCGaaataaaatggaaacatgaGATTCTAT
TTCTTTGATATAAACAATCATGAAATGATAACCAGTAGACGAAGAATAAA
ACATTGCTTTTGACAACATTCGAGGAGGGTAGCCAACCTTTGCAATCTCC
AACTTCCACAAGAATTCTCCACATCCCAAAGCTTTTGAAGGTGCTTGTTC
GGCAGTCTTAGACTTAGTAGTAGATGTTTCTTTAGGTTTAGTAGATTGTT
GTGTTTGTTTGGTGGAGTCATGAGAATTTTGTTTGAGGAGAATATT Coding sequence (CDS) from alignment at scaffold_15:509470..510415 >TCONS_00049065 ID=TCONS_00049065|Name=TCONS_00049065|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_15:509470..510415 (Clytia hemisphaerica)
CTATCCATTGTAAGGAAAAGtcactttgtttttatcagtttcTCCTTTGA
CGAGTGAAATTTTAATCTTCGCTTTCAAAGGCCATTGCAAAGAAGCATCA
TTCCATCCTTCAATGATTCGaaataaaatggaaacatgaGATTCTATTTC
TTTGATATAAACAATCATGAAATGATAACCAGTAGACGAAGAATAAAACA
TTGCTTTTGACAACATTCGAGGAGGGTAGCCAACCTTTGCAATCTCCAAC
TTCCACAAGAATTCTCCACATCCCAAAGCTTTTGAAGGTGCTTGTTCGGC
AGTCTTAGACTTAGTAGTAGATGTTTCTTTAGGTTTAGTAGATTGTTGTG
TTTGTTTGGTGGAGTCATGAGAATTTTGTTTGAGGAGAATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049065-exon-scaffold_15-1491911889:509470..510415 | TCONS_00049065-exon-scaffold_15-1491911889:509470..510415 | Clytia hemisphaerica | exon |
| TCONS_00049065-exon-scaffold_15-1510915933:509470..510415 | TCONS_00049065-exon-scaffold_15-1510915933:509470..510415 | Clytia hemisphaerica | exon |
| TCONS_00049065-exon-scaffold_15-1575043694:509470..510415 | TCONS_00049065-exon-scaffold_15-1575043694:509470..510415 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:509470..510415 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008974 | TRAF-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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