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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049049 ID=TCONS_00049049|Name=TCONS_00049049|organism=Clytia hemisphaerica|type=transcript|length=1221bp
CTAGTTTGAAGTATTAAGAAAAAGCTGTTGGATGAGAATGCTGATTTTGA
AGATTCTGTTgttatttagatttttgatttaTATCCGGTGTAAGGAATCT
AGAAAAGTATCAAACATCACATTACCTTGGCAAAATGACTTTAAAGATGA
TAATTTTATTCAAGATCCAGACAAAGCTAAAACGCTAAAAGCTGTTGATA
CCACTTTCAATTTAAACAGAAATGTATTGAAACCGAGTGCACAGAATACC
GAAGAAAGACATgatgaaaatattgataaacCAGAGAATTTGGACAAACA
AATAAATGTAAAACTGAAAGTTGGTAACTTTGATTCTAAGgatcatcaaa
attttaatccCAGCAATAGTATTATAAAGGGTAAAAATTCTgaatttcat
gtaaaaaataGTACTGCAACAGCCAATTCAGTAATTTCTAACTCGTATGG
TGAAAAAAACGATATAAAAAGTCTTGGAAGAAATCAAGAGTTAGATTCGT
TGTACAGTAACTCCTTATTAGAATCATCGCTGCAACagaatgaaaaagat
caaaagcAGATTACCAACATCACTGGTGATGAAGAAAATGAACAACATCA
GAATCTTAACCTTGAAGAGGACAACGATTTCGATTCCCTTCGTAATGTAT
TACAACGTCGATCACAATCCAGCGTGAAGAAATTCAACAAGCAGGATCCA
ACGGCTGCATCAAATCATCCAGacactttttttaattcacCAGCAGTTAT
GGAGAAACTGCAACCAATAATCAGGAGCCAATTAAGAACTAAAACCTACA
TGACACTTTTACTAAATGGTTATAAACGGGTTCACTATTTGAAGACGCTT
CTGAATCAGATGATGACTTCAGATATGTGTCAACgtttaaaaattaaaga
ttttctaTCACCTACTAACTCCTCTAACACTTGGAAAAAAGCAGCACTCC
TTgtaaatgaatttgaaaagaaatgttcAGATTTACTAGAACGGAAAAGG
AGGAATCATTTTGCAATGAGTACAAGAAGGCATCGCTTTAAAtgaagttt
ttgttttcaacgCATGCTTTGGTAACCATGTTAATGTTATCAAAGTTTTA
TGAAAAGGCAGTCTCTTCATATAACAGACTTTTACGTGGATAACTTTGGT
TGTACATTAGTTATACATattttggtttgaatttttggGTCTTCATTAAA
TCATAAGACTTTAGATAAAAC Run BLAST on NCBI protein sequence of TCONS_00049049-protein >TCONS_00049049-protein ID=TCONS_00049049-protein|Name=TCONS_00049049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MRMLILKILLLFRFLIYIRCKESRKVSNITLPWQNDFKDDNFIQDPDKAK
TLKAVDTTFNLNRNVLKPSAQNTEERHDENIDKPENLDKQINVKLKVGNF
DSKDHQNFNPSNSIIKGKNSEFHVKNSTATANSVISNSYGEKNDIKSLGR
NQELDSLYSNSLLESSLQQNEKDQKQITNITGDEENEQHQNLNLEEDNDF
DSLRNVLQRRSQSSVKKFNKQDPTAASNHPDTFFNSPAVMEKLQPIIRSQ
LRTKTYMTLLLNGYKRVHYLKTLLNQMMTSDMCQRLKIKDFLSPTNSSNT
WKKAALLVNEFEKKCSDLLERKRRNHFAMSTRRHRFK Run BLAST on NCBI transcript from alignment at scaffold_15:155076..156296 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049049 ID=TCONS_00049049|Name=TCONS_00049049|organism=Clytia hemisphaerica|type=transcript|length=1221bp|location=Sequence derived from alignment at scaffold_15:155076..156296 (Clytia hemisphaerica)
GTTTTATCTAAAGTCTTATGATTTAATGAAGACccaaaaattcaaaccaa
aatATGTATAACTAATGTACAACCAAAGTTATCCACGTAAAAGTCTGTTA
TATGAAGAGACTGCCTTTTCATAAAACTTTGATAACATTAACATGGTTAC
CAAAGCATGcgttgaaaacaaaaacttcaTTTAAAGCGATGCCTTCTTGT
ACTCATTGCAAAATGATTCCTCCTTTTCCGTTCTAGTAAATCTgaacatt
tcttttcaaattcatttacAAGGAGTGCTGCTTTTTTCCAAGTGTTAGAG
GAGTTAGTAGGTGAtagaaaatctttaatttttaaacGTTGACACATATC
TGAAGTCATCATCTGATTCAGAAGCGTCTTCAAATAGTGAACCCGTTTAT
AACCATTTAGTAAAAGTGTCATGTAGGTTTTAGTTCTTAATTGGCTCCTG
ATTATTGGTTGCAGTTTCTCCATAACTGCTGgtgaattaaaaaaagtgtC
TGGATGATTTGATGCAGCCGTTGGATCCTGCTTGTTGAATTTCTTCACGC
TGGATTGTGATCGACGTTGTAATACATTACGAAGGGAATCGAAATCGTTG
TCCTCTTCAAGGTTAAGATTCTGATGTTGTTCATTTTCTTCATCACCAGT
GATGTTGGTAATCTgcttttgatctttttcattctGTTGCAGCGATGATT
CTAATAAGGAGTTACTGTACAACGAATCTAACTCTTGATTTCTTCCAAGA
CTTTTTATATCGTTTTTTTCACCATACGAGTTAGAAATTACTGAATTGGC
TGTTGCAGTACtattttttacatgaaattcAGAATTTTTACCCTTTATAA
TACTATTGCTGggattaaaattttgatgatcCTTAGAATCAAAGTTACCA
ACTTTCAGTTTTACATTTATTTGTTTGTCCAAATTCTCTGgtttatcaat
attttcatcATGTCTTTCTTCGGTATTCTGTGCACTCGGTTTCAATACAT
TTCTGTTTAAATTGAAAGTGGTATCAACAGCTTTTAGCGTTTTAGCTTTG
TCTGGATCTTGAATAAAATTATCATCTTTAAAGTCATTTTGCCAAGGTAA
TGTGATGTTTGATACTTTTCTAGATTCCTTACACCGGATAtaaatcaaaa
atctaaataacAACAGAATCTTCAAAATCAGCATTCTCATCCAACAGCTT
TTTCTTAATACTTCAAACTAG Coding sequence (CDS) from alignment at scaffold_15:155076..156296 >TCONS_00049049 ID=TCONS_00049049|Name=TCONS_00049049|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_15:155076..156296 (Clytia hemisphaerica)
tcaTTTAAAGCGATGCCTTCTTGTACTCATTGCAAAATGATTCCTCCTTT
TCCGTTCTAGTAAATCTgaacatttcttttcaaattcatttacAAGGAGT
GCTGCTTTTTTCCAAGTGTTAGAGGAGTTAGTAGGTGAtagaaaatcttt
aatttttaaacGTTGACACATATCTGAAGTCATCATCTGATTCAGAAGCG
TCTTCAAATAGTGAACCCGTTTATAACCATTTAGTAAAAGTGTCATGTAG
GTTTTAGTTCTTAATTGGCTCCTGATTATTGGTTGCAGTTTCTCCATAAC
TGCTGgtgaattaaaaaaagtgtCTGGATGATTTGATGCAGCCGTTGGAT
CCTGCTTGTTGAATTTCTTCACGCTGGATTGTGATCGACGTTGTAATACA
TTACGAAGGGAATCGAAATCGTTGTCCTCTTCAAGGTTAAGATTCTGATG
TTGTTCATTTTCTTCATCACCAGTGATGTTGGTAATCTgcttttgatctt
tttcattctGTTGCAGCGATGATTCTAATAAGGAGTTACTGTACAACGAA
TCTAACTCTTGATTTCTTCCAAGACTTTTTATATCGTTTTTTTCACCATA
CGAGTTAGAAATTACTGAATTGGCTGTTGCAGTACtattttttacatgaa
attcAGAATTTTTACCCTTTATAATACTATTGCTGggattaaaattttga
tgatcCTTAGAATCAAAGTTACCAACTTTCAGTTTTACATTTATTTGTTT
GTCCAAATTCTCTGgtttatcaatattttcatcATGTCTTTCTTCGGTAT
TCTGTGCACTCGGTTTCAATACATTTCTGTTTAAATTGAAAGTGGTATCA
ACAGCTTTTAGCGTTTTAGCTTTGTCTGGATCTTGAATAAAATTATCATC
TTTAAAGTCATTTTGCCAAGGTAATGTGATGTTTGATACTTTTCTAGATT
CCTTACACCGGATAtaaatcaaaaatctaaataacAACAGAATCTTCAAA
ATCAGCATTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049049-exon-scaffold_15-1491911889:155076..156296 | TCONS_00049049-exon-scaffold_15-1491911889:155076..156296 | Clytia hemisphaerica | exon |
| TCONS_00049049-exon-scaffold_15-1510915933:155076..156296 | TCONS_00049049-exon-scaffold_15-1510915933:155076..156296 | Clytia hemisphaerica | exon |
| TCONS_00049049-exon-scaffold_15-1575043694:155076..156296 | TCONS_00049049-exon-scaffold_15-1575043694:155076..156296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:155076..156296 . |
Blast
The following BLAST results are available for this feature:
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