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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049033 ID=TCONS_00049033|Name=TCONS_00049033|organism=Clytia hemisphaerica|type=transcript|length=919bp
TTCCTTATATCCTATAGTGAACGTTTGTGAAGTCGCTCCAACTCTGCATC
GACTCCGGAAATTAATATTCGCGGGtatgaattttatgtttttaacataT
TGTCTGATATTTATGTTTGAATGAGTTATAAACCAAATATTCGGAGtatt
tccttttgaaaaaggttaactcccttcctttcaaaatttaagtttagtTG
ACACAAAGGTTGCATGAAGAGCGGTTAAGGTTGTAACATTTTCAATACGA
CAATGGgcatatcaaaaattttcatttgtgTGTGTCTCGCAGCTTTATCG
TTCAAGGACCATGTGGAAACTGCAAATACTGTTGATCTATCTTGTGATAA
AGATTTAGCATTCATTGTATCATCCTGCCAAGATGATGCCCTCAATCCTA
CTAACTTTAACGCTTCAATTGATTTTGTTAAATCAATGGCCGACAATTTC
ACTATTGCGTATCGCCGAACTCAAGTTTCTTTGATAACCTCGTGTTTTAC
ACAAAAAAGActcgaatttggctttgaagaTTTACAAGGCTGGAGTCCAT
TGGTGTTTAAGGCGTACCTTAACCAGATGAAAGAACAAACAGGTGGTGCG
AGCTTCCATAATATTTCCAACTCGTTGAActtagtgaaaaaagttttcaa
tcaAGGTGACGGAGACAGAGTCGGAACCCCAAACGTTCTTGTTGTAATCC
TTGACAAACCAAGCAATGAACTGGACAACGTGCAAAATGCTTTAAACTCA
CTTCAACTTTCATCACCGGGTATTAAAATCCTTGCCGTTGCTATTGGCGA
CAAAGTTGATAATAACTATTTGTATAACATGACTGGTGATAGAAGTTCCA
ATGTCTTTCGTGCACAAAATGCAAGTGATTTGGATGAGCTTAGAGATGAC
GTCGTCCAAAGAATTTGTG Run BLAST on NCBI protein sequence of TCONS_00049033-protein >TCONS_00049033-protein ID=TCONS_00049033-protein|Name=TCONS_00049033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MGISKIFICVCLAALSFKDHVETANTVDLSCDKDLAFIVSSCQDDALNPT
NFNASIDFVKSMADNFTIAYRRTQVSLITSCFTQKRLEFGFEDLQGWSPL
VFKAYLNQMKEQTGGASFHNISNSLNLVKKVFNQGDGDRVGTPNVLVVIL
DKPSNELDNVQNALNSLQLSSPGIKILAVAIGDKVDNNYLYNMTGDRSSN
VFRAQNASDLDELRDDVVQRIC Run BLAST on NCBI transcript from alignment at scaffold_15:488352..491735- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049033 ID=TCONS_00049033|Name=TCONS_00049033|organism=Clytia hemisphaerica|type=transcript|length=3384bp|location=Sequence derived from alignment at scaffold_15:488352..491735- (Clytia hemisphaerica)
TTCCTTATATCCTATAGTGAACGTTTGTGAAGTCGCTCCAACTCTGCATC
GACTCCGGAAATTAATATTCGCGGGTATGAATTTTATGTTTTTAACATAT
TGTCTGATATTTATGTTTGAATGAGTTATAAACCAAATATTCGGAGTATT
TCCTTTTGAAAAAGGTTAACTCCCTTCCTTTCAAAATTTAAGTTTAGTTG
ACACAAAGGTTGCATGAAGAGCGGTTAAGGTTGTAACATTTTCAATACGA
CAATGGGCATATCAAAAATTTTCATTTGTGTGTGTCTCGCAGGTAAGATA
TAGTTTTGTTTTTCGATGGTTGAATACTTTAAAAAGCCCGGATAACAAAA
TCATCATTGAATAAGTAGTTAGCAGTGTTAGCGGTCAGATAAATATTACT
CTTCTTCTTGTAGGCTTTTAAACGTAAATCTTGAAAATTTTACAGTTTGT
ACAGTTTGTTTGTTTAGACCGTACCAGATCTGAATGTACTTAAAACATAA
AATCTCATTTTATATAAAATTACCGAAAGTTAGTGATTTGCCTAACGTTT
TAGAGATATACTTTAAGAACATTTGACAATTATCTTGCCAAGGTTGTATA
GTATCCATGGGGATGTTAAAATAGTTGGCGAGATGATGCTGATGAACAGC
TTTCTGCTCTTCCCGTCAACAACTTTTCTTCTTACGCTTACCTAACTCAT
AAGCTCACTTTTCCCCACGTTTATAGTTCCAGCCCGACTGGCGTGCCAAT
CTAGACAAAAACAATCGGCATTATTTTTTTCTTTTCTCTGTAGCTTTATC
GTTCAAGGACCATGTGGAAACTGCAAATACTGTTGATCTATCTTGTGATA
AAGATTTAGCATTCATTGTATCATCCTGCCAAGATGATGCCCTCAATCCT
ACTAACTTTAACGCTTCAATTGATTTTGTTAAATCAATGGCCGACAATTT
CACTATTGCGTATCGCCGAACTCAAGTTTCTTTGATAACCTCGTGTTTTA
CACAAAAAAGACTCGAATTTGGCTTTGAAGATTTACAAGGCTGGAGTCCA
TTGGTGTTTAAGGCGTACCTTAACCAGATGAAAGAACAAACAGGTTTGTG
AAAACGTTACCTTATACATTACCTTATAAGCGAACTAATTTTGCTTGTTT
CCATTTAGGAGGCCCCAATATTATGGTTCGGGCGGTGGTTCGGGCCTTAA
TTAGCGTAATGGTGTGATCTATGCTTTTAAAAAGTGGGATGCAAAATTTA
TTGAGTTTTTTTGGTTTGATGACGTGACAAGAGAATATTTTCGGTGTGAT
TTCCCAAACCTAAAAACCTATACACTTCGATTCAGTTGTTGACATATCTA
TCCTAAATTTGTTAAACGTATAAGCCCCCCTTTCCATTAGGAAATTTTGA
CTGCAGATTGCTAAATGACAATAGAAAAAGTCAAAGAAATATGTCTTATC
CCAGTTGCCACACAACGTTAGTTTAACGTTTATCTAATGTTCACTACGTC
CACTTCAAGTTCGATAAACGTTGAAACAACGTTGATGCCATTTGGTACCG
TTTAGCAAACAAATTCTTATATAATATAACTATAAAATCCAATGCTGCCA
AAAAATTATAAAGAGCAAAAGAAAGCAATTTGATGAAAATCATTCATATT
TCCTTTCTCAGGTGGTGCGAGCTTCCATAATATTTCCAACTCGTTGAACT
TAGTGAAAAAAGTTTTCAATCAAGGTGACGGAGACAGAGTCGGAACCCCA
AACGTAAGTAACATGAGTTTTTCATTCCTTGATTTAAAGACATACCGTCA
ACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGGTAATTCGGCC
ACCATTTCACCAAACCTCCAAAGTCATTTGATTTGAGTTAATGAACGGCG
TATTAAGAAATACACAATTTCTACAGTAAGTGAAATACAGACCAGATATG
CAACAGTGCCATGTTTCGATCAATCGTCCCAAGTTAGAGCAGTTGACAGT
AGACCATGTTATAATACAATACTTATAAGCAAGTATTATTCACCTGGTGG
CTGTAAGCGGGGCCTGGAGTGAGGGATTGACGGCGTCCATCCCCTTTTCT
TTTTGCGCTAAACTTTTGAGATCGAATGCTAAAGCGGAGCGCCGCACTTA
CTCTCAGCTTCTAGTTACTGACATCTCTGATCAGGTTACCCAATTTCAGC
TTCATAAACTAAAGATGGCTAAACTAAGTAAGGTGGCCTTGTGACTACTA
CTTATAAATATAAATTATGTATAAGAAATGCAGTTTAGTGTATAGAATTT
CGTGCTCTGTATGACTAGCCCCCTCAAAACGTTAATCACTTTTTCAAAAA
GAAGAGAAATTGCGTTTCCAGGCAAAATTCTAAGCCGCAAAGAATTTAGA
TTTTTAAGAGGTCCTCATAATCAAAAAAGACCTATATCACGTGATATATC
TTTTCAAACTGAGCGAACAAATGTACCACAAGTATATTTTCCAACTTTCC
TAGATAAAAAGTTATCAACGTTTTCTTGGTAAAATAAGTCTTCGATTTTA
GTTAGATTATGCTTCATTTTTACCACAGTCCAAAATGGAGGCGTACAAGG
CAAGGAGAAAACTTCTACCACACTCCCGCCCTACAGAATTAGTTGCCGAC
AACCCTTTTCGAGTTTATGTTAGTTTATCACTGGCAGGGGGGGACTCATT
TTCCCCAAAACTGATTATGGGTTATCCAAATATTTCAATACCAAAATTTA
AACGCAATTGTTTCAGTCTACTCTGCTTCCCCCTACCCAGCTGTACGATT
AAACACCCCCTTCTCACAGACTCAGAAGGATTTTTTCAGCCAGTGGGGAT
AAAAATAACGGACTGAAAATCGATGGGGATTGATATTCTCATATTTTTTA
CGGCTAGAGATTGATATTCTTCAGAAAATTCAGTGGGGATGGTAAAAAAT
AATAAATATTTTGCAGTGAGGATTAGTTTATTTGATTACTCTCAGTGGGG
ACAAAAATCGAAGAGTAATTTTCCACCGGGGACGATGTTTTGGCCAACTT
TTCCAGTGGGAAGGATTTACAGTAGGCCTGTGAAAGTTAAATCGTTAATG
CTCAAAGAATTGTAAAACTTAATCACTACTACTAATATTCTTTTCGCAGG
TTCTTGTTGTAATCCTTGACAAACCAAGCAATGAACTGGACAACGTGCAA
AATGCTTTAAACTCACTTCAACTTTCATCACCGGGTATTAAAATCCTTGC
CGTTGCTATTGGCGACAAAGTTGATAATAACTATTTGTATAACATGACTG
GTGATAGAAGTTCCAATGTCTTTCGTGCACAAAATGCAAGTGATTTGGAT
GAGCTTAGAGATGACGTCGTCCAAAGAATTTGTG Coding sequence (CDS) from alignment at scaffold_15:488352..491735- >TCONS_00049033 ID=TCONS_00049033|Name=TCONS_00049033|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_15:488352..491735- (Clytia hemisphaerica)
GTTCTTGTTGTAATCCTTGACAAACCAAGCAATGAACTGGACAACGTGCA
AAATGCTTTAAACTCACTTCAACTTTCATCACCGGGTATTAAAATCCTTG
CCGTTGCTATTGGCGACAAAGTTGATAATAACTATTTGTATAACATGACT
GGTGATAGAAGTTCCAATGTCTTTCGTGCACAAAATGCAAGTGATTTGGA
TGAGCTTAGAGATGACGTCGTCCAAAGAATTTGTGTGGTGCGAGCTTCCA
TAATATTTCCAACTCGTTGAACTTAGTGAAAAAAGTTTTCAATCAAGGTG
ACGGAGACAGAGTCGGAACCCCAAACCTTTATCGTTCAAGGACCATGTGG
AAACTGCAAATACTGTTGATCTATCTTGTGATAAAGATTTAGCATTCATT
GTATCATCCTGCCAAGATGATGCCCTCAATCCTACTAACTTTAACGCTTC
AATTGATTTTGTTAAATCAATGGCCGACAATTTCACTATTGCGTATCGCC
GAACTCAAGTTTCTTTGATAACCTCGTGTTTTACACAAAAAAGACTCGAA
TTTGGCTTTGAAGATTTACAAGGCTGGAGTCCATTGGTGTTTAAGGCGTA
CCTTAACCAGATGAAAGAACAAACAGATGGGCATATCAAAAATTTTCATT
TGTGTGTGTCTCGCAGGTTCTTGTTGTAATCCTTGACAAACCAAGCAATG
AACTGGACAACGTGCAAAATGCTTTAAACTCACTTCAACTTTCATCACCG
GGTATTAAAATCCTTGCCGTTGCTATTGGCGACAAAGTTGATAATAACTA
TTTGTATAACATGACTGGTGATAGAAGTTCCAATGTCTTTCGTGCACAAA
ATGCAAGTGATTTGGATGAGCTTAGAGATGACGTCGTCCAAAGAATTTGT
GTGGTGCGAGCTTCCATAATATTTCCAACTCGTTGAACTTAGTGAAAAAA
GTTTTCAATCAAGGTGACGGAGACAGAGTCGGAACCCCAAACCTTTATCG
TTCAAGGACCATGTGGAAACTGCAAATACTGTTGATCTATCTTGTGATAA
AGATTTAGCATTCATTGTATCATCCTGCCAAGATGATGCCCTCAATCCTA
CTAACTTTAACGCTTCAATTGATTTTGTTAAATCAATGGCCGACAATTTC
ACTATTGCGTATCGCCGAACTCAAGTTTCTTTGATAACCTCGTGTTTTAC
ACAAAAAAGACTCGAATTTGGCTTTGAAGATTTACAAGGCTGGAGTCCAT
TGGTGTTTAAGGCGTACCTTAACCAGATGAAAGAACAAACAGATGGGCAT
ATCAAAAATTTTCATTTGTGTGTGTCTCGCAGGTTCTTGTTGTAATCCTT
GACAAACCAAGCAATGAACTGGACAACGTGCAAAATGCTTTAAACTCACT
TCAACTTTCATCACCGGGTATTAAAATCCTTGCCGTTGCTATTGGCGACA
AAGTTGATAATAACTATTTGTATAACATGACTGGTGATAGAAGTTCCAAT
GTCTTTCGTGCACAAAATGCAAGTGATTTGGATGAGCTTAGAGATGACGT
CGTCCAAAGAATTTGTGTGGTGCGAGCTTCCATAATATTTCCAACTCGTT
GAACTTAGTGAAAAAAGTTTTCAATCAAGGTGACGGAGACAGAGTCGGAA
CCCCAAACCTTTATCGTTCAAGGACCATGTGGAAACTGCAAATACTGTTG
ATCTATCTTGTGATAAAGATTTAGCATTCATTGTATCATCCTGCCAAGAT
GATGCCCTCAATCCTACTAACTTTAACGCTTCAATTGATTTTGTTAAATC
AATGGCCGACAATTTCACTATTGCGTATCGCCGAACTCAAGTTTCTTTGA
TAACCTCGTGTTTTACACAAAAAAGACTCGAATTTGGCTTTGAAGATTTA
CAAGGCTGGAGTCCATTGGTGTTTAAGGCGTACCTTAACCAGATGAAAGA
ACAAACAGATGGGCATATCAAAAATTTTCATTTGTGTGTGTCTCGCAGGT
TCTTGTTGTAATCCTTGACAAACCAAGCAATGAACTGGACAACGTGCAAA
ATGCTTTAAACTCACTTCAACTTTCATCACCGGGTATTAAAATCCTTGCC
GTTGCTATTGGCGACAAAGTTGATAATAACTATTTGTATAACATGACTGG
TGATAGAAGTTCCAATGTCTTTCGTGCACAAAATGCAAGTGATTTGGATG
AGCTTAGAGATGACGTCGTCCAAAGAATTTGTGTGGTGCGAGCTTCCATA
ATATTTCCAACTCGTTGAACTTAGTGAAAAAAGTTTTCAATCAAGGTGAC
GGAGACAGAGTCGGAACCCCAAACCTTTATCGTTCAAGGACCATGTGGAA
ACTGCAAATACTGTTGATCTATCTTGTGATAAAGATTTAGCATTCATTGT
ATCATCCTGCCAAGATGATGCCCTCAATCCTACTAACTTTAACGCTTCAA
TTGATTTTGTTAAATCAATGGCCGACAATTTCACTATTGCGTATCGCCGA
ACTCAAGTTTCTTTGATAACCTCGTGTTTTACACAAAAAAGACTCGAATT
TGGCTTTGAAGATTTACAAGGCTGGAGTCCATTGGTGTTTAAGGCGTACC
TTAACCAGATGAAAGAACAAACAGATGGGCATATCAAAAATTTTCATTTG
TGTGTGTCTCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049033-exon-scaffold_15-1575043694:491444..491735 | TCONS_00049033-exon-scaffold_15-1575043694:491444..491735 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1575043694:490643..490942 | TCONS_00049033-exon-scaffold_15-1575043694:490643..490942 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1575043694:489983..490074 | TCONS_00049033-exon-scaffold_15-1575043694:489983..490074 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1575043694:488352..488586 | TCONS_00049033-exon-scaffold_15-1575043694:488352..488586 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1510915933:491444..491735 | TCONS_00049033-exon-scaffold_15-1510915933:491444..491735 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1510915933:490643..490942 | TCONS_00049033-exon-scaffold_15-1510915933:490643..490942 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1510915933:489983..490074 | TCONS_00049033-exon-scaffold_15-1510915933:489983..490074 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1510915933:488352..488586 | TCONS_00049033-exon-scaffold_15-1510915933:488352..488586 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1491911889:491444..491735 | TCONS_00049033-exon-scaffold_15-1491911889:491444..491735 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1491911889:490643..490942 | TCONS_00049033-exon-scaffold_15-1491911889:490643..490942 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1491911889:489983..490074 | TCONS_00049033-exon-scaffold_15-1491911889:489983..490074 | Clytia hemisphaerica | exon |
| TCONS_00049033-exon-scaffold_15-1491911889:488352..488586 | TCONS_00049033-exon-scaffold_15-1491911889:488352..488586 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:488352..491735 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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