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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049026 ID=TCONS_00049026|Name=TCONS_00049026|organism=Clytia hemisphaerica|type=transcript|length=280bp
TTTGACCAAATTAAATCAACCATTGATATGGTAAACATCGAGACAAAAGA
GCTAATTTTATCTACTTTGCTTGCATTTTTAAACGTGACTcacgtttgtt
ttgaaatatatcAGTCTTTTTTTTCTGCTGTCATGTGAAGTGTCTCAGTG
GAATTCTCTGGGCTGAGTTAAGTGATGACAATCTTGAAATGTTGAAGTCA
GGAAGACATATTTTAAACTCTGATGGAGAGTCTGAAAGCAGCAGTAATGA
AATGCAGTgTGAGAAAACATCAACAANTCT Run BLAST on NCBI transcript from alignment at scaffold_15:430977..434966- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049026 ID=TCONS_00049026|Name=TCONS_00049026|organism=Clytia hemisphaerica|type=transcript|length=3990bp|location=Sequence derived from alignment at scaffold_15:430977..434966- (Clytia hemisphaerica)
TTTGACCAAATTAAATCAACCATTGATATGGTAAACATCGAGACAAAAGA
GCTAATTTTATCTACTTTGCTTGCATTTTTAAACGTGACTCACGTTTGTT
TTGAAATATATCAGTCTTTTTTTTCTGCTGTCATGTGAAGTGTCTCAGTG
GAATTCTCTGGGCTGAGTTAAGTGATGACAATCTTGAAATGTTGAAGTCA
GGAAGACATATTTTAAACTCTGATGGAGAGTCTGAAAGCAGCAGTAATGA
AATGCAGTGTAAGTTTGACAAAATGAGAGTCTGGAGAACTCTTATGACAG
TTTAAATTCAACCTCTAACACAAGTTGTATTTTACTTGAGGAGTTGTCCA
CTCACTGCTCTTTTTTTCATTTTCATGAATTATTTTAGGTACAGCTCTAA
CAACTAGGTCATGAATGGCTGAAAGAATGATGAAGGTAAGGTACTCTTAA
GTGCCTGTTAGACAAAGGAATATTTTTTTGGACGGGGAGATACGTGCGGG
CAAACTATCGTGGGACATAAGCCCAACTCCATCGAATGATTAAAGTTCGA
TTCAATCAAACTCTTAAGATTTTTTTAACAATTGTGAGTGTTCGATTAAA
TTCGATCAATGGGTTGTGGTTCGGTTCGATCAGTTCGATTACAGTAACCA
ATTTTGTTTGACAAGTTTGTGCCTCTATCTCCCACCGTATTCAAAGCCAA
ATTCAAAATGTAAATCGGGAAAATTACTTCTGATAACGGATGACACACTT
TTCCTGTATCCTTTCAACGCCAGACTGCCAGAGGTGGTTTGTCTGGGGCT
GGTGGTTTGTAGTATTCCGCCATTCGGTCGCATGCGAAATCGCAACAACA
GAGGGTCTGCGACTTTATTCCGGATAGACAAATATCCAGGTACAATAAAC
CTTAAGTCCAGGAACTGTCGAAATGGCGATTGCGTGTCACGAAAAAGTTT
TTGCAAGTGAGATTAGGTTCGATTAATTCTTTTAATCGAACTTTAATCGT
TCGATGGAGTTCGATAGTTTGATTGTTCGATTCGTTCAACAAGTTCAATT
GATCGGGTCTGGATAAGCGCACAGACAAGCGCAACGTTTTGTTAGGAATA
GGCAGCAGGCTGGAGAGTTGGAAACATGTAGGTTGGATAAAGCATTAAAA
AAAAATTTAAAAAATTCTCTAAGTCCTTTTCTTGGTGCATCATGAAGATT
TAGCCATAAGTTTTATTAGGGCATCAGGTCAGGGACTAGGTTATAAATTC
AAGAATAATTTTCTAAAAATGAAATGACATTCAAGAACTGCTCCAACTGA
ACTTTTCAATTGTGGATAGACTGATGATTTGTGGGTGTAAGTTCCATAAT
AACAAGTTTGAAGTTCTTGCATGACAAAATCACCATTATTGTATTTAGAA
TAATAGCCAACAGAACTTGAACAGGCTAACAGCAACATTAAGGGTCTATT
TTATGCCTAAATTTGGCGAGCAAAAGTTTTCATAAATTTTAGCCCTTTTT
GCGAAAGCAAATGTCTTTGGAAATTTTTGAAGGGGCCAAATATAAAATCT
GTAAAACTTCTAACTTAGAATTTATGGCACTTTTCAGTAGCCTGTTAAAA
CCTCGTATGTCAAAAGACGAAAGTTTCAATCCAATTCAAAAAGTATATTT
GTACCTCTAAGCTATTTTTTCGTGTGAAATATTCTATCTTTATGTCTTGA
TTTGGGAAAGTTTATGCTTGCCAATAAAAGATTTTTCCGCTCGCGAAATT
TTGTACACCTAAAGTAGTTGTTGTTTTTATCTCTATATACTTGAGGCGTA
CAAACTTTCGCGAGCAGAAACTTTCACGATTTTCGTGAATTTTAGCCCTT
TTCGTTGAAAATTCTTGAGAAGGCAATTCGTGAAAGTTTATGCTCGCAAA
ATAAAATCTGCAAAGGACTTTAGTCAAATTTTCCTCTTTGATGATAACGA
GGATAAAATTTAGTGTAGAAATTATGCAAAAGTCCATCAATTCTGGTTTA
AGTACATTTGAACGATCAAAACACTGGTTTCATGATCCACAAACTTGAAT
TTTCTACTTAAAATATACCTAGTTCACGAAAGTTTATGCTCGCGAAAGTA
AATGTCGTAGATTTCGCGAGTTTTCGATCTCGCGTAAGTCTCTGCTCGCG
AAAGTTTGTACTCCTAAAGTATTTTGTTGTTTATTTCCAAAAATAGAATG
TTACATCACAGGCAAGAAACTACATCCCAACAGCTCACACAGGAACAAAT
TTTCGATTTCAAAGGTTGGAAATTCGATATTTTTGGGTCGGAAATTTTGG
TTTTATAATTGAAGGTTGGAAATTTGAGCGATTACCTTAAGCTGATTTGG
AAAACGTAAATTACCCATAGGTTTTGTAGAATAAACCAATGCCCTTGAAA
AATCAAGTGGCTGGTTGGAAAACATGACTTTTTGAGTGGAAAATTTTTAT
TTTCCAAACAGTTTGGGAATTATAAAAAAGGTCAAAAATCGATGTGAAAA
TACATATTTTTGTAAATTTGATACCTCGGGTTGAAAAACTAGATTTTTTG
GGTTGGAAATTTGTGTTTCTCCCAAACAGTTTGAAAACGTTAAAAATCCA
TGTGGATATTACATTTTTGTGAAATAGACGATATCGGCTTTCCGAATTCT
CCCCGAATGATTACCCATGATGCATTGAGCAAAAAATTCACGGAAAGTCA
ATATCGTCCGTGAATTTTTTTGTGCAATGCATCATGGGTAATCATTCGGG
GAGAATTCGGAAAGCCGATATCGTCTATTGAGACTCTTTCGATTGGAAAA
CTAGACTTTTTGGGTTGGAAATTTTTGTTTCTCCAAACAGTTTAGAAAAC
GTTAAAAATCCATGTGGAAATTACATTTTTGTACCATTTTCTGCGCATGT
CCTTTGAGAAAACCACAAGCGATTTTTCGCGCAGAACTGTTTTGATGTAT
ATCTAACATAGATAGATATTAGGCTATAATGTGAGCAGTCAAGCTGTAAG
TTTCCGTCAGGTGAGGCGTTCCTTCGGAGCGGCCTCGGTCAATCGCAGTG
AGTTCGCACAGTGAATGAAGCACATAGGCTAATTGTGTCATAGTTTCAAA
TGGTGCCCTGCTGAGCTGTGTGAGTGATCTAAGATCAACTACGTATCTGT
GGGAACAATAACGAGAGATTGACCGGGAGCCATCGATCCTAGGCTAGCGA
GTGACTGTTCACAAAAATAAAAACCTTGTTTAAGATCTCTTTTTCCATAT
CTCTGTCATCACTTTTTGGATTTTGGCTTTTTTCAACCTGGATTTTTGAA
AATTCCAACCTTTTTTAGCTTGAATTTTGGCTTTATTCAACCTGGATTTT
TGACAATTCCAAGTTTGTTTACTTTGGACTGTGGCTTTTTTCAAACTAGA
TTTTTGAAGATTCCAAGCCATGGAAAATGCAAAATTTCCATCCTTGGAGA
GTGTCCCAAGTTTCCAGGTTGGATTTTTTTTCCATTGGATTTTATCTATT
TTCCAACTAAGAAATCTTGAAATTTCCAACCTTGGATGAAATTTTTTTCC
TGTGTATGTGTCATGTTCAGTCATCTGTTTCTGCGATTTCTTTCTGCTAA
TAATGCTTAGATATCATTATGTTGCGTATGCTTTTTTGGGACATATCATA
TCTTACCCGGGGAGGCCCTTTTCATAGTTCTATTTGATAGAAATGAAATA
AACCAAGAACATCATCAACATCTTCTTGTTAAAACTTCTTCATCTTCTTG
TTAAAACTTCTTCACTTGAGCTATGCCCCTGATGCTGAAATATCATTTTC
GTGTAGTGCCTAAATTGTTAAAATTCTCTACCTCTCGCACAACTAAATTT
TAACAAATTTTGGAAAATCAGGCCCATGTCCTAGATTAGAATAAATTATA
GAAAAAATATCCTAAAAAAATACTAGCCTCATTTTCAAACATTTAGAATA
TTTCTTTCTTTGTTTCAGGTGAGAAAACATCAACAANTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049026-exon-scaffold_15-1575043694:434709..434966 | TCONS_00049026-exon-scaffold_15-1575043694:434709..434966 | Clytia hemisphaerica | exon |
| TCONS_00049026-exon-scaffold_15-1575043694:430977..430998 | TCONS_00049026-exon-scaffold_15-1575043694:430977..430998 | Clytia hemisphaerica | exon |
| TCONS_00049026-exon-scaffold_15-1510915933:434709..434966 | TCONS_00049026-exon-scaffold_15-1510915933:434709..434966 | Clytia hemisphaerica | exon |
| TCONS_00049026-exon-scaffold_15-1510915933:430977..430998 | TCONS_00049026-exon-scaffold_15-1510915933:430977..430998 | Clytia hemisphaerica | exon |
| TCONS_00049026-exon-scaffold_15-1491911889:434709..434966 | TCONS_00049026-exon-scaffold_15-1491911889:434709..434966 | Clytia hemisphaerica | exon |
| TCONS_00049026-exon-scaffold_15-1491911889:430977..430998 | TCONS_00049026-exon-scaffold_15-1491911889:430977..430998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:430977..434966 - |
Blast
The following BLAST results are available for this feature:
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