TCONS_00049025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049025
Unique NameTCONS_00049025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049025 ID=TCONS_00049025|Name=TCONS_00049025|organism=Clytia hemisphaerica|type=transcript|length=449bp
TTTGACCAAATTAAATCAACCATTGATATGGTAAACATCGAGACAAAAGA
GCTAATTTTATCTACTTTGCTTGCATTTTTAAACGTGACTcacgtttgtt
ttgaaatatatcAGTCTTTTTTTTCTGCTGTCATGTGAAGTGTCTCAGTG
GAATTCTCTGGGCTGAGTTAAGTGATGACAATCTTGAAATGTTGAAGTCA
GGAAGACATATTTTAAACTCTGATGGAGAGTCTGAAAGCAGCAGTAATGA
AATGCAGTAATGTTACATCACAGGCAAGAAACTACATCCCAACAGCTCAC
ACAGGAacaaattttcgatttcaaaggttggaaattcgatatttttgggt
cggaaattttggttttataattgaaggttggaaatttgagcgattacctt
aagctgatttggaaaacgtaaattacccataggttttgtagaataaacc
Run BLAST on NCBI

transcript from alignment at scaffold_15:430282..434966-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049025 ID=TCONS_00049025|Name=TCONS_00049025|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at scaffold_15:430282..434966- (Clytia hemisphaerica)
TTTGACCAAATTAAATCAACCATTGATATGGTAAACATCGAGACAAAAGA
GCTAATTTTATCTACTTTGCTTGCATTTTTAAACGTGACTCACGTTTGTT
TTGAAATATATCAGTCTTTTTTTTCTGCTGTCATGTGAAGTGTCTCAGTG
GAATTCTCTGGGCTGAGTTAAGTGATGACAATCTTGAAATGTTGAAGTCA
GGAAGACATATTTTAAACTCTGATGGAGAGTCTGAAAGCAGCAGTAATGA
AATGCAGTGTAAGTTTGACAAAATGAGAGTCTGGAGAACTCTTATGACAG
TTTAAATTCAACCTCTAACACAAGTTGTATTTTACTTGAGGAGTTGTCCA
CTCACTGCTCTTTTTTTCATTTTCATGAATTATTTTAGGTACAGCTCTAA
CAACTAGGTCATGAATGGCTGAAAGAATGATGAAGGTAAGGTACTCTTAA
GTGCCTGTTAGACAAAGGAATATTTTTTTGGACGGGGAGATACGTGCGGG
CAAACTATCGTGGGACATAAGCCCAACTCCATCGAATGATTAAAGTTCGA
TTCAATCAAACTCTTAAGATTTTTTTAACAATTGTGAGTGTTCGATTAAA
TTCGATCAATGGGTTGTGGTTCGGTTCGATCAGTTCGATTACAGTAACCA
ATTTTGTTTGACAAGTTTGTGCCTCTATCTCCCACCGTATTCAAAGCCAA
ATTCAAAATGTAAATCGGGAAAATTACTTCTGATAACGGATGACACACTT
TTCCTGTATCCTTTCAACGCCAGACTGCCAGAGGTGGTTTGTCTGGGGCT
GGTGGTTTGTAGTATTCCGCCATTCGGTCGCATGCGAAATCGCAACAACA
GAGGGTCTGCGACTTTATTCCGGATAGACAAATATCCAGGTACAATAAAC
CTTAAGTCCAGGAACTGTCGAAATGGCGATTGCGTGTCACGAAAAAGTTT
TTGCAAGTGAGATTAGGTTCGATTAATTCTTTTAATCGAACTTTAATCGT
TCGATGGAGTTCGATAGTTTGATTGTTCGATTCGTTCAACAAGTTCAATT
GATCGGGTCTGGATAAGCGCACAGACAAGCGCAACGTTTTGTTAGGAATA
GGCAGCAGGCTGGAGAGTTGGAAACATGTAGGTTGGATAAAGCATTAAAA
AAAAATTTAAAAAATTCTCTAAGTCCTTTTCTTGGTGCATCATGAAGATT
TAGCCATAAGTTTTATTAGGGCATCAGGTCAGGGACTAGGTTATAAATTC
AAGAATAATTTTCTAAAAATGAAATGACATTCAAGAACTGCTCCAACTGA
ACTTTTCAATTGTGGATAGACTGATGATTTGTGGGTGTAAGTTCCATAAT
AACAAGTTTGAAGTTCTTGCATGACAAAATCACCATTATTGTATTTAGAA
TAATAGCCAACAGAACTTGAACAGGCTAACAGCAACATTAAGGGTCTATT
TTATGCCTAAATTTGGCGAGCAAAAGTTTTCATAAATTTTAGCCCTTTTT
GCGAAAGCAAATGTCTTTGGAAATTTTTGAAGGGGCCAAATATAAAATCT
GTAAAACTTCTAACTTAGAATTTATGGCACTTTTCAGTAGCCTGTTAAAA
CCTCGTATGTCAAAAGACGAAAGTTTCAATCCAATTCAAAAAGTATATTT
GTACCTCTAAGCTATTTTTTCGTGTGAAATATTCTATCTTTATGTCTTGA
TTTGGGAAAGTTTATGCTTGCCAATAAAAGATTTTTCCGCTCGCGAAATT
TTGTACACCTAAAGTAGTTGTTGTTTTTATCTCTATATACTTGAGGCGTA
CAAACTTTCGCGAGCAGAAACTTTCACGATTTTCGTGAATTTTAGCCCTT
TTCGTTGAAAATTCTTGAGAAGGCAATTCGTGAAAGTTTATGCTCGCAAA
ATAAAATCTGCAAAGGACTTTAGTCAAATTTTCCTCTTTGATGATAACGA
GGATAAAATTTAGTGTAGAAATTATGCAAAAGTCCATCAATTCTGGTTTA
AGTACATTTGAACGATCAAAACACTGGTTTCATGATCCACAAACTTGAAT
TTTCTACTTAAAATATACCTAGTTCACGAAAGTTTATGCTCGCGAAAGTA
AATGTCGTAGATTTCGCGAGTTTTCGATCTCGCGTAAGTCTCTGCTCGCG
AAAGTTTGTACTCCTAAAGTATTTTGTTGTTTATTTCCAAAAATAGAATG
TTACATCACAGGCAAGAAACTACATCCCAACAGCTCACACAGGAACAAAT
TTTCGATTTCAAAGGTTGGAAATTCGATATTTTTGGGTCGGAAATTTTGG
TTTTATAATTGAAGGTTGGAAATTTGAGCGATTACCTTAAGCTGATTTGG
AAAACGTAAATTACCCATAGGTTTTGTAGAATAAACCAATGCCCTTGAAA
AATCAAGTGGCTGGTTGGAAAACATGACTTTTTGAGTGGAAAATTTTTAT
TTTCCAAACAGTTTGGGAATTATAAAAAAGGTCAAAAATCGATGTGAAAA
TACATATTTTTGTAAATTTGATACCTCGGGTTGAAAAACTAGATTTTTTG
GGTTGGAAATTTGTGTTTCTCCCAAACAGTTTGAAAACGTTAAAAATCCA
TGTGGATATTACATTTTTGTGAAATAGACGATATCGGCTTTCCGAATTCT
CCCCGAATGATTACCCATGATGCATTGAGCAAAAAATTCACGGAAAGTCA
ATATCGTCCGTGAATTTTTTTGTGCAATGCATCATGGGTAATCATTCGGG
GAGAATTCGGAAAGCCGATATCGTCTATTGAGACTCTTTCGATTGGAAAA
CTAGACTTTTTGGGTTGGAAATTTTTGTTTCTCCAAACAGTTTAGAAAAC
GTTAAAAATCCATGTGGAAATTACATTTTTGTACCATTTTCTGCGCATGT
CCTTTGAGAAAACCACAAGCGATTTTTCGCGCAGAACTGTTTTGATGTAT
ATCTAACATAGATAGATATTAGGCTATAATGTGAGCAGTCAAGCTGTAAG
TTTCCGTCAGGTGAGGCGTTCCTTCGGAGCGGCCTCGGTCAATCGCAGTG
AGTTCGCACAGTGAATGAAGCACATAGGCTAATTGTGTCATAGTTTCAAA
TGGTGCCCTGCTGAGCTGTGTGAGTGATCTAAGATCAACTACGTATCTGT
GGGAACAATAACGAGAGATTGACCGGGAGCCATCGATCCTAGGCTAGCGA
GTGACTGTTCACAAAAATAAAAACCTTGTTTAAGATCTCTTTTTCCATAT
CTCTGTCATCACTTTTTGGATTTTGGCTTTTTTCAACCTGGATTTTTGAA
AATTCCAACCTTTTTTAGCTTGAATTTTGGCTTTATTCAACCTGGATTTT
TGACAATTCCAAGTTTGTTTACTTTGGACTGTGGCTTTTTTCAAACTAGA
TTTTTGAAGATTCCAAGCCATGGAAAATGCAAAATTTCCATCCTTGGAGA
GTGTCCCAAGTTTCCAGGTTGGATTTTTTTTCCATTGGATTTTATCTATT
TTCCAACTAAGAAATCTTGAAATTTCCAACCTTGGATGAAATTTTTTTCC
TGTGTATGTGTCATGTTCAGTCATCTGTTTCTGCGATTTCTTTCTGCTAA
TAATGCTTAGATATCATTATGTTGCGTATGCTTTTTTGGGACATATCATA
TCTTACCCGGGGAGGCCCTTTTCATAGTTCTATTTGATAGAAATGAAATA
AACCAAGAACATCATCAACATCTTCTTGTTAAAACTTCTTCATCTTCTTG
TTAAAACTTCTTCACTTGAGCTATGCCCCTGATGCTGAAATATCATTTTC
GTGTAGTGCCTAAATTGTTAAAATTCTCTACCTCTCGCACAACTAAATTT
TAACAAATTTTGGAAAATCAGGCCCATGTCCTAGATTAGAATAAATTATA
GAAAAAATATCCTAAAAAAATACTAGCCTCATTTTCAAACATTTAGAATA
TTTCTTTCTTTGTTTCAGGTGAGAAAACATCAACAANTCTTTATGTCTTG
ATTTGGGAAAGTTTATGCTTGCCAAAAGATTTTTCCGCTCGCGAAATTTT
GTACGCCTAAAGTAGTTGTTGTTTTTATCTCCATATACTTGAGGCGTACA
AACTTTCGCGAGCAGAAACTTTCACGATTTTCGCGAATTTTATCCCTTTT
CGTTGAAAATTCTTGAGAAGGCAATTCGTGAAAGTTTATGCTCGCGAAAT
AAAATCTGCAAAGGACTTTAGTCAAATTTTCCTCTTTGATGATAACGAGG
ATAAAATTTAGTGTAGAAATTATGCAAAAGTCCATCAATTCTGGTTTAAG
TACATTTGAACGATCAAAACACTGGTTTCATGATCCACAAACTTGAATTT
TCTACTTAAAATATACCTAGTTCACGAAAGTTTATGCTCGCGAAAGTAAA
TGTCGTAGATTTCGCGATTTTTCGATCTCGCGTAAGTTTCTGCTCGCGAA
AGTTTGTACTCCTAAAGTATTTTGTTGTTTATTTCCAAAAATAGAATGTT
ACATCACAGGCAAGAAACTACATCCCAACAGCTCACACAGGAACAAATTT
TCGATTTCAAAGGTTGGAAATTCGATATTTTTGGGTCGGAAATTTTGGTT
TTATAATTGAAGGTTGGAAATTTGAGCGATTACCTTAAGCTGATTTGGAA
AACGTAAATTACCCATAGGTTTTGTAGAATAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031141XLOC_031141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049025-exon-scaffold_15-1575043694:434709..434966TCONS_00049025-exon-scaffold_15-1575043694:434709..434966Clytia hemisphaericaexon
TCONS_00049025-exon-scaffold_15-1575043694:430282..430472TCONS_00049025-exon-scaffold_15-1575043694:430282..430472Clytia hemisphaericaexon
TCONS_00049025-exon-scaffold_15-1510915933:434709..434966TCONS_00049025-exon-scaffold_15-1510915933:434709..434966Clytia hemisphaericaexon
TCONS_00049025-exon-scaffold_15-1510915933:430282..430472TCONS_00049025-exon-scaffold_15-1510915933:430282..430472Clytia hemisphaericaexon
TCONS_00049025-exon-scaffold_15-1491911889:434709..434966TCONS_00049025-exon-scaffold_15-1491911889:434709..434966Clytia hemisphaericaexon
TCONS_00049025-exon-scaffold_15-1491911889:430282..430472TCONS_00049025-exon-scaffold_15-1491911889:430282..430472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:430282..434966 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.6897	63.0116	78.0967	85.464	0.445821	1.02961	0.206148	0.199713	121.542	84.0621	115.919	137.723	119.321	109.883	101.96	98.5368	82.9039	90.74	88.742	104.968	113.306	106.428	93.6369	96.3732	0.175282	0.478451	158.353	186.43	93.5401	114.602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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