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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049016 ID=TCONS_00049016|Name=TCONS_00049016|organism=Clytia hemisphaerica|type=transcript|length=2139bpRun BLAST on NCBI transcript from alignment at scaffold_15:204406..214165- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049016 ID=TCONS_00049016|Name=TCONS_00049016|organism=Clytia hemisphaerica|type=transcript|length=9760bp|location=Sequence derived from alignment at scaffold_15:204406..214165- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049016 vs. Swiss-Prot (Human)
Match: PPM1G (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 8.033e-74 Identity = 114/188 (60.64%), Postives = 147/188 (78.19%), Query Frame = 3
Query: 1113 QEVGKDSGTTAVVALIHNKQLYVANAGDSRCILCRNGKVVEMSKDHSPDVEEERKRIEAAGSKICSEGRINGGINLTRAVGDHAYKQNKDLPPEEQAVTALPDVRVQDLTDEDEFMVLACDGIWNVMTNDEVLDFVRDRITANEKADEKLKLSQICEEMFDHCLAPDTQNDGTGCDNMTCMIIQFKKK 1676
+E G DSGTTAVVALI KQL VANAGDSRC++ GK ++MS DH P+ E E RI+ AG K+ +GR+NGG+NL+RA+GDH YK+NK+LPPEEQ ++ALPD++V LTD+ EFMV+ACDGIWNVM++ EV+DF++ +I+ ++ E LS I EE+ D CLAPDT DGTGCDNMTC+II FK +
Sbjct: 321 EEPGSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPR 508 HSP 2 Score: 127.872 bits (320), Expect = 5.797e-31 Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = 3
Query: 30 MGAYLPKPVTEKTSHD---ESLDHLSFGISGMQGWRENMEDAHCAMPDFDGKNNALFGVFDGHGGEEVAVYVSQNLHKFILDCDSYMEGKIESALKEAFMNIDQAVITEEVIEELKEIAGFNEGNEEERA---------GELNALL-EEAHMPIEDILANIQQKCQ 488
MGAYL +P T K S D L +G S MQGWR +MEDAH +P+ D + A+F V+DGHGGEEVA+Y ++ L I D +Y EGK++ AL++AF+ ID + TEEVI+EL +IAG +E+E+ E ALL EEA M IE++L Q C
Sbjct: 1 MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNCIPELDSET-AMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAFLAIDAKLTTEEVIKELAQIAGRPTEDEDEKEKVADEDDVDNEEAALLHEEATMTIEELLTRYGQNCH 165 The following BLAST results are available for this feature:
BLAST of TCONS_00049016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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