TCONS_00049010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049010
Unique NameTCONS_00049010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049010 ID=TCONS_00049010|Name=TCONS_00049010|organism=Clytia hemisphaerica|type=transcript|length=416bp
CAAAAAGTCATTTCAAGATGATCAAACTTTTGTGTCTTGTTGCCACCGCA
TTGACAATAGCAGTTTCTGCTGAAGAAAATTAccgaaatgacaattttga
tagAATCGGACACGACATCATGATGCGAGGTGGAGCTAAAGCTGAACgaT
ATGCATATCTTCGTGATTTTGCAACCTTTCAAGATGGTGGATGCATTGAT
GCTGATACTTTTTCCGTCTGTAGTACACAATTCGCTAAAGCTGGTTTCAA
ATGTGATCAATCAAGATATGACTTCTTAAAGGGATGTCAAAAATATTGTG
AATTTTgtgtttaaaatctttaaaattgaacaaaaataagatctatttat
ttttttgtctaTTTATCTGAAATATATTACCATCCTAGATATTATTCCTA
AAGATATTCATGCAGA
Run BLAST on NCBI

protein sequence of TCONS_00049010-protein

>TCONS_00049010-protein ID=TCONS_00049010-protein|Name=TCONS_00049010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
KSHFKMIKLLCLVATALTIAVSAEENYRNDNFDRIGHDIMMRGGAKAERY
AYLRDFATFQDGGCIDADTFSVCSTQFAKAGFKCDQSRYDFLKGCQKYCE
FCV
Run BLAST on NCBI

transcript from alignment at scaffold_15:183131..185578-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049010 ID=TCONS_00049010|Name=TCONS_00049010|organism=Clytia hemisphaerica|type=transcript|length=2448bp|location=Sequence derived from alignment at scaffold_15:183131..185578- (Clytia hemisphaerica)
CAAAAAGTCATTTCAAGATGATCAAACTTTTGTGTCTTGTTGCCACCGCA
TTGACAATAGCAGTTTGTAAGATTACCTTCTTTATAATATTCTGAGAGGC
ACTTTGAAACCATTTTGAAAGAATATTTCTATACGTTATACATTTTTAGA
GGAGTTAGAAACTCCAATCCAAACACGAAATCAATACAGAATCAAAAAAG
TCTTTGACAGACTACAATTTTACCTCAAGACCCTACGTTATACTAGAAAG
TATACGACAACCAAAGATTTTTCCAAATGAATTCATTTTCGGCAATCTTC
CTAGGAGGTTTATTTTCTCTTTATCCTAGGCCAGCCATTTTTAATCCACC
TGTATCTTTAGGGACCCCTGTCTCAGTGACCCGGTGAGAATTTATTGGCT
AGTTGGGTTAAAATGAAGGAGTTAAAAAACAATGGGGATAAAAGACCTCT
TAATGGGGATTTTAAATTCTTTTGTTTATGACTCAAAAATTCTGGCGGAA
ATTCCTTTGTAAATTTCTGGGTATTTTCCTCACCGGGGACGACAATTTGG
CCGATTTTTCCAGTGGAGATCCAACTGGGTCTGTGATAGGGGGTGTCTTT
AGGCACAAAGATCCAAGATTCCATTTTTTCTATGTACTAACATATTTTGT
AGTAACTATTTTGTCTTTAAGCTGCTGAAGAAAATTACCGAAATGACAAT
TTTGATAGAATCGGACACGGTAAGATTTATTCAGCAGATATCCTTCCGCT
ATCCTTGAAAATCGAAAAGCCAACAATACGCCGGGAACGAGCGACCTCAT
ACATTACGGCTACCTTGTAGAATCCACTGCTTACCATTGCTATAGATTTT
GAACGTTAAAAATAGCCGTAGTTCAATTTTATTCTCGTTTTTCAGACATC
ATGATGCGAGGTGGAGCTAAAGCTGAACGTAAGTTTACCATAATTGTCCT
CTGTAACGCTTCAATTCTCACATGACTCTACTTCAAAGCTATAGTAGTGA
GTACCAGTACCCATTGACTTCCAAGCCCGAATGGCAAGACTCGAGACTCC
TGGATGGGAAATGAAGCCACTTATTTCTAATCCAGAACTCCTGCGCATGG
TTTTTATACAAACGCTATATTGAAAGTAAAATTTATCACTAGAACTCAAA
AATGCAGTCCTCAATGACAAAGAAACCGCTAGATACAATCCGTCGTCATG
ATCGCAGCACGTTCTACACGCGTTCTGGATGGAAAATAAGTGGCTTCACT
TTTTCTTGCCTGGGAAAGGTTAGAGATTCTACTCCAGCCCTTCGGGCTTT
AAACTCAAATTGAGTGATCTGACCTGATCAATAACCAAATCAAACCCAAT
ATTTGTGTTGTTTTAAAAGTACGTGGGACAGAATATTTCATAACCCGTTA
CTGCGTATGAAAAAGTATATACTAAATTCATACACCTCAGACAAGTTTAC
GCTTCAACCTGCTGCTATATGATTCCGTGTGTCTCTAGACTAGAGTCTAC
TTTTTAGCTGAACTTTGCTTTTTGATAATTTTTTATGAAGCTGAGTCCAG
TGAAGTAGACTAGGAGTATTTGGCGAGGTCACCATTTTGAAAAAAAAATT
AAAAATCGAAATAACAATAACAATTTCTAAGCAAAAGCATATTACCATAT
ACTGCATATACTACCAGGCCACTTAATCGCACCATCCAGTCTATAAAAAA
AGCTTTAAGTGGACCCCGGGCTAGTGTGTCTCCAGTGTGTTAGTTTGTAT
GTTGCTACTTTGCACTGCACAGAAACACACTTTGCTAGAGTGCACCTCAT
ATTTATATATTTGTAATACACGGTTGCAAAATTATATCAATGTCGTCAAA
ACATGTGATTACTCGAAAAAGTTCACGTGATTTCCCATGTTACTTGTTTT
ACAACCTACAGATGATAAATTAATTAGTGTCAATAAATTCGAACCAATCA
GAAATAAATGTCATGTAAAAATTTCGAGTAAAAGCGTGACTTGTCTTCAG
ACTTTCATACTATTACTTTTTGGGTTACCGGGTTTAGCATTGCCTGTAAA
TAGGCATGATATCTATTGAAAATTCAAAATTCACTGCCGTACTACACTTC
GTTCTACAGTGTATGTTTAATAGGAGCAGATGGGTTTGGTCTAGCTATTT
CTGATAATTATTTTTCATTTTTTTTATAGGATATGCATATCTTCGTGATT
TTGCAACCTTTCAAGATGGTGGATGCATTGATGCTGATACTTTTTCCGTC
TGTAGTACACAATTCGCTAAAGCTGGTTTCAAATGTGATCAATCAAGATA
TGACTTCTTAAAGGGATGTCAAAAATATTGTGAATTTTGTGTTTAAAATC
TTTAAAATTGAACAAAAATAAGATCTATTTATTTTTTTGTCTATTTATCT
GAAATATATTACCATCCTAGATATTATTCCTAAAGATATTCATGCAGA

Coding sequence (CDS) from alignment at scaffold_15:183131..185578-

>TCONS_00049010 ID=TCONS_00049010|Name=TCONS_00049010|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_15:183131..185578- (Clytia hemisphaerica)
GATATGCATATCTTCGTGATTTTGCAACCTTTCAAGATGGTGGATGCATT
GATGCTGATACTTTTTCCGTCTGTAGTACACAATTCGCTAAAGCTGGTTT
CAAATGTGATCAATCAAGATATGACTTCTTAAAGGGATGTCAAAAATATT
GTGAATTTTGTGTTTAAACATCATGATGCGAGGTGGAGCTAAAGCTGAAC
CTGCTGAAGAAAATTACCGAAATGACAATTTTGATAGAATCGGACACGAA
AAGTCATTTCAAGATGATCAAACTTTTGTGTCTTGTTGCCACCGCATTGA
CAATAGCAGTTTGATATGCATATCTTCGTGATTTTGCAACCTTTCAAGAT
GGTGGATGCATTGATGCTGATACTTTTTCCGTCTGTAGTACACAATTCGC
TAAAGCTGGTTTCAAATGTGATCAATCAAGATATGACTTCTTAAAGGGAT
GTCAAAAATATTGTGAATTTTGTGTTTAAACATCATGATGCGAGGTGGAG
CTAAAGCTGAACCTGCTGAAGAAAATTACCGAAATGACAATTTTGATAGA
ATCGGACACGAAAAGTCATTTCAAGATGATCAAACTTTTGTGTCTTGTTG
CCACCGCATTGACAATAGCAGTTTGATATGCATATCTTCGTGATTTTGCA
ACCTTTCAAGATGGTGGATGCATTGATGCTGATACTTTTTCCGTCTGTAG
TACACAATTCGCTAAAGCTGGTTTCAAATGTGATCAATCAAGATATGACT
TCTTAAAGGGATGTCAAAAATATTGTGAATTTTGTGTTTAAACATCATGA
TGCGAGGTGGAGCTAAAGCTGAACCTGCTGAAGAAAATTACCGAAATGAC
AATTTTGATAGAATCGGACACGAAAAGTCATTTCAAGATGATCAAACTTT
TGTGTCTTGTTGCCACCGCATTGACAATAGCAGTTTGATATGCATATCTT
CGTGATTTTGCAACCTTTCAAGATGGTGGATGCATTGATGCTGATACTTT
TTCCGTCTGTAGTACACAATTCGCTAAAGCTGGTTTCAAATGTGATCAAT
CAAGATATGACTTCTTAAAGGGATGTCAAAAATATTGTGAATTTTGTGTT
TAAACATCATGATGCGAGGTGGAGCTAAAGCTGAACCTGCTGAAGAAAAT
TACCGAAATGACAATTTTGATAGAATCGGACACGAAAAGTCATTTCAAGA
TGATCAAACTTTTGTGTCTTGTTGCCACCGCATTGACAATAGCAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031133XLOC_031133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049010-exon-scaffold_15-1575043694:185513..185578TCONS_00049010-exon-scaffold_15-1575043694:185513..185578Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1575043694:184860..184907TCONS_00049010-exon-scaffold_15-1575043694:184860..184907Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1575043694:184651..184683TCONS_00049010-exon-scaffold_15-1575043694:184651..184683Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1575043694:183131..183399TCONS_00049010-exon-scaffold_15-1575043694:183131..183399Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1510915933:185513..185578TCONS_00049010-exon-scaffold_15-1510915933:185513..185578Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1510915933:184860..184907TCONS_00049010-exon-scaffold_15-1510915933:184860..184907Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1510915933:184651..184683TCONS_00049010-exon-scaffold_15-1510915933:184651..184683Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1510915933:183131..183399TCONS_00049010-exon-scaffold_15-1510915933:183131..183399Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1491911889:185513..185578TCONS_00049010-exon-scaffold_15-1491911889:185513..185578Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1491911889:184860..184907TCONS_00049010-exon-scaffold_15-1491911889:184860..184907Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1491911889:184651..184683TCONS_00049010-exon-scaffold_15-1491911889:184651..184683Clytia hemisphaericaexon
TCONS_00049010-exon-scaffold_15-1491911889:183131..183399TCONS_00049010-exon-scaffold_15-1491911889:183131..183399Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049010-proteinTCONS_00049010-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:183131..185578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02834	0.501397	0.194057	0.759416	0	0	0	0	0	0.178896	0	0	0.113986	0	0.0973209	0	26.247	28.6167	0	0.19065	70.9237	70.8048	15.328	20.3671	11.9609	11.8244	0.23501	0	0	0.193814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top