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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049007 ID=TCONS_00049007|Name=TCONS_00049007|organism=Clytia hemisphaerica|type=transcript|length=410bp
cttatttttatatttacttCTGTCTACCAATGAAGTCCTATAAATAGGTG
AATTTGGATTTGATCATCCTTATCGTATTTTTTGGAGATTTGAGGTTTTC
AAAGATCACTATGAAGGTTTTGGCAATCTTTTTCGTATGTATGGCTGTGG
TCTACGCCAGTTTTGAAGATTTTGAGTTCGATGAACTTGAAGGCTCTGGT
GCAACGTGTGGTGACACTTACCGTACATGCAGATTGGGTGGTTCAGGATT
TTTAGAATGTGTTCAACAAAAACGTGATTGCTGTGAAACTCAATGCGGTG
GAAACTTATGGTGCAGAGTCAAATGTATGGCAAGCAGAACTTTGTAATTC
TCAAAACCTTTATTTTTATCGTAATATgtttaaataaattttagatTACA
TTACTAATAT Run BLAST on NCBI transcript from alignment at scaffold_15:152326..154586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049007 ID=TCONS_00049007|Name=TCONS_00049007|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at scaffold_15:152326..154586- (Clytia hemisphaerica)
CTTATTTTTATATTTACTTCTGTCTACCAATGAAGTCCTATAAATAGGTG
AATTTGGATTTGATCATCCTTATCGTATTTTTTGGAGATTTGAGGTTTTC
AAAGATCACTATGAAGGTTTTGGCAATCTTTTTCGTATGTATGGCTGTGG
TCTACGCCAGTTTTGAAGGTAAGATACTCTTTCTTGAAATGTTTTTTTCC
TATAAAACTTTCAATTTCCACACCTTATCGAGATCATCAAGACAGGTTTT
ACATCTCATTTGAAAATAGCCTAGGGTCAGGGCTCTTTTTAAACTTGTAC
GAAACTCTCTTAAAATGTCAAGCATTTTTCTTCCATTTAGATTTTGAGTT
CGATGAACTTGAAGGCTCTGGTGCAACGGTAAGATTTTTTCCTTTTTGTA
AAAGTCTGTTCTAGGATTTTCAATTATCTTTAAATGTCTCCTCTGTTTAG
AGAAGTTTCCAAAAATTACCTACCCAATTTCTCGAGTAGGTTTAGATGCT
GTAAGTAAGGGTGTTAGCACGACGGACCTCACTAAACGTTCATTGATCAC
ATCAATACTACCCTCGATAAGGACGTTACTCTTGAAGGGAAACTCTTTAT
GACCAAACTCAGTACGCTAAATAACTCATTGTGGTTACGATTAAGTGTCA
TTAGGGAAATTCCCTTTTCAACTACTCTTAACAGTTTTCTAAGTTTGTGT
TGTCTTATAGTTTTAAAGCCGTTATAGTTAGATTTGTTCACCGAAATTCA
TTTTTGACCAAATGGACATTAACATTGTCCTTTATACACCCCTGTATCAT
TAGCAGCGCCAGAGCAATTCCCCAATACAACCCGTGAAAATATTTTCCAT
CCAATTTATGTTACAGTATTATCATTATTCTTAAAATCTCGGATATTTGA
TTTATTCTAGTTCCTCGGTTATACCTTGAAAATTTACAATCTCAACTGGG
ACCCCAAGCCATAATTGATACTCTATCATATCTTTAACTTCTAATTTGCC
CTAATTTCTTCACAAGATTGAATCCGTTATTGTGAAAAACCGTTATTATC
AATTGTGAAAATATAGAAATCTTAGTAACACCCCCTTCTCACAGACCCAC
AGGGACCCCTTCCCACTAGAAAAATTGGCCAAAGTATCGTCCCCGGTGGA
AAATTACCATTCAATATTTGTCCCCGCTGAAAATAATCAAATAAACAAAT
CCTCACTGCGAAATACTATATTATTTTCCCATCTCACTGAATTTTCTGAC
TCAAAAACAAAAGAATATCAACCCCCATCGAGTTCCAGTCCGTTATTTTT
ATCCCCACTGGCTGAAAAAATTCCACCGGGTCTATGAGAAGGGGATGTTC
AGTAATAAAGCAATTAATACTAATACCTAGGTTTAGTATGGTATGATTGA
GTGATTGAGTGATTGATTGCTTTTTTACCTTTCAGTGTGGTGACACTTAC
CGTACATGCAGATTGGGTGGTTCAGGATTNCAAAAACAAAAGTATATCAA
CCCCCATCGAGTTTCAGTCCGTTATTTTTATCCCCACTGGCTGAAAAAAT
TCCACCGGGTCTATGAGAAGGGGATGTTCAGTAATAAAGCAATTAATACT
AATACCTAGGTTTAGTATGGTATGATTGAGTGATTGAGTGATTGATTGCT
TTTTTACCTTTCAGTGTGGTGACACTTACCGTACATGCAGATTGGGTGGT
TCAGGATTTTTAGAATGTGTTCAACAAAAACGTGATTGCTGTGAAACTCA
AGTAAGTATTCTCCCCCTGGTTAAATGTGCGTCCTTATTTGAAGCTTACT
TTTGATGTAATGCACACTCGTGTCTCGTGCTGGTGTAAAAGGCAGGAATA
CTAACCCATGAGGGTGTATTTCTAGGTCTATTATTTATTCCACAGCTCGA
AAATCCAGTCCAGGATTCTTAAATTTGAAAGAAATTTCAGAGTGATTTTC
ATTGATCCAAGTGGGTAGGATGTCCAATCGGGTCTGGGACACGGAATGTT
CCTTGGCAAGTACCGTCGTAATAAAATTGGCTTCAACAGTAATTTTTTTA
GAATCTTCTTCTTAGGGTTTGAATAAAGTTTGATACAGCTAATAAACATG
TTATTAAGAACTCTATTTTGATCCGTATATTTCTTTTTTCACAGTGCGGT
GGAAACTTATGGTGCAGAGTCAAATGTATGGCAAGCAGAACTTTGTAATT
CTCAAAACCTTTATTTTTATCGTAATATGTTTAAATAAATTTTAGATTAC
ATTACTAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049007-exon-scaffold_15-1575043694:154419..154586 | TCONS_00049007-exon-scaffold_15-1575043694:154419..154586 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1575043694:154209..154246 | TCONS_00049007-exon-scaffold_15-1575043694:154209..154246 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1575043694:152836..152922 | TCONS_00049007-exon-scaffold_15-1575043694:152836..152922 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1575043694:152326..152442 | TCONS_00049007-exon-scaffold_15-1575043694:152326..152442 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1510915933:154419..154586 | TCONS_00049007-exon-scaffold_15-1510915933:154419..154586 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1510915933:154209..154246 | TCONS_00049007-exon-scaffold_15-1510915933:154209..154246 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1510915933:152836..152922 | TCONS_00049007-exon-scaffold_15-1510915933:152836..152922 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1510915933:152326..152442 | TCONS_00049007-exon-scaffold_15-1510915933:152326..152442 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1491911889:154419..154586 | TCONS_00049007-exon-scaffold_15-1491911889:154419..154586 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1491911889:154209..154246 | TCONS_00049007-exon-scaffold_15-1491911889:154209..154246 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1491911889:152836..152922 | TCONS_00049007-exon-scaffold_15-1491911889:152836..152922 | Clytia hemisphaerica | exon |
| TCONS_00049007-exon-scaffold_15-1491911889:152326..152442 | TCONS_00049007-exon-scaffold_15-1491911889:152326..152442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:152326..154586 - |
Blast
The following BLAST results are available for this feature:
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