TCONS_00049006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049006
Unique NameTCONS_00049006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049006 ID=TCONS_00049006|Name=TCONS_00049006|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATGAAGTCCTATAAATAGGTGAATTTGGATTTGATCATCCTTATCGTATT
TTTTGGAGATTTGAGGTTTTCAAAGATCACTATGAAGGTTTTGGCAATCT
TTTTCGTATGTATGGCTGTGGTCTACGCCAGTTTTGAAGATTTTGAGTTC
GATGAACTTGAAGGCTCTGGTGCAACGTGTGGTGACACTTACCGTACATG
CAGATTGGGTGGTTCAGGATTTTTAGAATGTGTTCAACAAAAACGTGATT
GCTGTGAAACTCAATGCGGTGGAAACTTATGGTGCAGAGTCAAATGTATG
GCAAGCAGAACTTTGTAATTCTCAAAACCTTTATTTTTATCGTAATATgt
ttaaataaattttagatTACATTACTAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_15:152326..154557-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049006 ID=TCONS_00049006|Name=TCONS_00049006|organism=Clytia hemisphaerica|type=transcript|length=2232bp|location=Sequence derived from alignment at scaffold_15:152326..154557- (Clytia hemisphaerica)
ATGAAGTCCTATAAATAGGTGAATTTGGATTTGATCATCCTTATCGTATT
TTTTGGAGATTTGAGGTTTTCAAAGATCACTATGAAGGTTTTGGCAATCT
TTTTCGTATGTATGGCTGTGGTCTACGCCAGTTTTGAAGGTAAGATACTC
TTTCTTGAAATGTTTTTTTCCTATAAAACTTTCAATTTCCACACCTTATC
GAGATCATCAAGACAGGTTTTACATCTCATTTGAAAATAGCCTAGGGTCA
GGGCTCTTTTTAAACTTGTACGAAACTCTCTTAAAATGTCAAGCATTTTT
CTTCCATTTAGATTTTGAGTTCGATGAACTTGAAGGCTCTGGTGCAACGG
TAAGATTTTTTCCTTTTTGTAAAAGTCTGTTCTAGGATTTTCAATTATCT
TTAAATGTCTCCTCTGTTTAGAGAAGTTTCCAAAAATTACCTACCCAATT
TCTCGAGTAGGTTTAGATGCTGTAAGTAAGGGTGTTAGCACGACGGACCT
CACTAAACGTTCATTGATCACATCAATACTACCCTCGATAAGGACGTTAC
TCTTGAAGGGAAACTCTTTATGACCAAACTCAGTACGCTAAATAACTCAT
TGTGGTTACGATTAAGTGTCATTAGGGAAATTCCCTTTTCAACTACTCTT
AACAGTTTTCTAAGTTTGTGTTGTCTTATAGTTTTAAAGCCGTTATAGTT
AGATTTGTTCACCGAAATTCATTTTTGACCAAATGGACATTAACATTGTC
CTTTATACACCCCTGTATCATTAGCAGCGCCAGAGCAATTCCCCAATACA
ACCCGTGAAAATATTTTCCATCCAATTTATGTTACAGTATTATCATTATT
CTTAAAATCTCGGATATTTGATTTATTCTAGTTCCTCGGTTATACCTTGA
AAATTTACAATCTCAACTGGGACCCCAAGCCATAATTGATACTCTATCAT
ATCTTTAACTTCTAATTTGCCCTAATTTCTTCACAAGATTGAATCCGTTA
TTGTGAAAAACCGTTATTATCAATTGTGAAAATATAGAAATCTTAGTAAC
ACCCCCTTCTCACAGACCCACAGGGACCCCTTCCCACTAGAAAAATTGGC
CAAAGTATCGTCCCCGGTGGAAAATTACCATTCAATATTTGTCCCCGCTG
AAAATAATCAAATAAACAAATCCTCACTGCGAAATACTATATTATTTTCC
CATCTCACTGAATTTTCTGACTCAAAAACAAAAGAATATCAACCCCCATC
GAGTTCCAGTCCGTTATTTTTATCCCCACTGGCTGAAAAAATTCCACCGG
GTCTATGAGAAGGGGATGTTCAGTAATAAAGCAATTAATACTAATACCTA
GGTTTAGTATGGTATGATTGAGTGATTGAGTGATTGATTGCTTTTTTACC
TTTCAGTGTGGTGACACTTACCGTACATGCAGATTGGGTGGTTCAGGATT
NCAAAAACAAAAGTATATCAACCCCCATCGAGTTTCAGTCCGTTATTTTT
ATCCCCACTGGCTGAAAAAATTCCACCGGGTCTATGAGAAGGGGATGTTC
AGTAATAAAGCAATTAATACTAATACCTAGGTTTAGTATGGTATGATTGA
GTGATTGAGTGATTGATTGCTTTTTTACCTTTCAGTGTGGTGACACTTAC
CGTACATGCAGATTGGGTGGTTCAGGATTTTTAGAATGTGTTCAACAAAA
ACGTGATTGCTGTGAAACTCAAGTAAGTATTCTCCCCCTGGTTAAATGTG
CGTCCTTATTTGAAGCTTACTTTTGATGTAATGCACACTCGTGTCTCGTG
CTGGTGTAAAAGGCAGGAATACTAACCCATGAGGGTGTATTTCTAGGTCT
ATTATTTATTCCACAGCTCGAAAATCCAGTCCAGGATTCTTAAATTTGAA
AGAAATTTCAGAGTGATTTTCATTGATCCAAGTGGGTAGGATGTCCAATC
GGGTCTGGGACACGGAATGTTCCTTGGCAAGTACCGTCGTAATAAAATTG
GCTTCAACAGTAATTTTTTTAGAATCTTCTTCTTAGGGTTTGAATAAAGT
TTGATACAGCTAATAAACATGTTATTAAGAACTCTATTTTGATCCGTATA
TTTCTTTTTTCACAGTGCGGTGGAAACTTATGGTGCAGAGTCAAATGTAT
GGCAAGCAGAACTTTGTAATTCTCAAAACCTTTATTTTTATCGTAATATG
TTTAAATAAATTTTAGATTACATTACTAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031130XLOC_031130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049006-exon-scaffold_15-1575043694:154419..154557TCONS_00049006-exon-scaffold_15-1575043694:154419..154557Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1575043694:154209..154246TCONS_00049006-exon-scaffold_15-1575043694:154209..154246Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1575043694:153132..153151TCONS_00049006-exon-scaffold_15-1575043694:153132..153151Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1575043694:152836..152902TCONS_00049006-exon-scaffold_15-1575043694:152836..152902Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1575043694:152326..152442TCONS_00049006-exon-scaffold_15-1575043694:152326..152442Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1510915933:154419..154557TCONS_00049006-exon-scaffold_15-1510915933:154419..154557Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1510915933:154209..154246TCONS_00049006-exon-scaffold_15-1510915933:154209..154246Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1510915933:153132..153151TCONS_00049006-exon-scaffold_15-1510915933:153132..153151Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1510915933:152836..152902TCONS_00049006-exon-scaffold_15-1510915933:152836..152902Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1510915933:152326..152442TCONS_00049006-exon-scaffold_15-1510915933:152326..152442Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1491911889:154419..154557TCONS_00049006-exon-scaffold_15-1491911889:154419..154557Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1491911889:154209..154246TCONS_00049006-exon-scaffold_15-1491911889:154209..154246Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1491911889:153132..153151TCONS_00049006-exon-scaffold_15-1491911889:153132..153151Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1491911889:152836..152902TCONS_00049006-exon-scaffold_15-1491911889:152836..152902Clytia hemisphaericaexon
TCONS_00049006-exon-scaffold_15-1491911889:152326..152442TCONS_00049006-exon-scaffold_15-1491911889:152326..152442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:152326..154557 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.278161	0	0	0	0.173816	0	0.41795	0	0.274362	0.142464	0.936997	2.38816	10.5347	25.4372	13.6398	16.5359	286.106	290.234	2520.02	2938.23	1704.41	1904.63	0	0	1.83151	4.21464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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