TCONS_00049005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049005
Unique NameTCONS_00049005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049005 ID=TCONS_00049005|Name=TCONS_00049005|organism=Clytia hemisphaerica|type=transcript|length=1240bp
ctctcaaaaaattaagattagagatatattgcaagtataggtgatttcag
tacctaactcgagatattaagcttcaaaaagcgcaaaaaagTGGataaaa
cagctgtttctggctgaaatacactgtttttaagggttttaaaaattttt
taaatgaacgatatttctttttcagacaGGTAAGAATATTATGGGATTTT
AAAAATAcaagaacaaattttttttaaattgcataattttgtatttcaga
taaaaaaaacttaaaatgggaTGTGCATTCTGTAAAGATCCAAATCAGTC
TAATAAAAATGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTAGACA
ATCAACATCAACCTTCCGCTACTAAACCTATCACGGATGACTCCAATTAT
CACTCTACAAATTCTATAACGAAAACAGACGAACAGTCACAATTGAGTAG
GATATTACACAAAACAGCACAaaatatAATAGACGTGTCAGCAATCGAAC
CTCACAGTATGGAACGTTCAGAATATATGGATAAGATGAGACATTATATA
GAGAAGACTACGAACagtgatttcaatttttcaaaacaaaagcaacTGAA
TCAAGTTACACATGCTCCACTGAACATTTTATTAGCGCCCAACATCAGTG
CATCAGATATCAAATTAATAACAGAAGCTAGTCACAACGTATCTGGAGCT
TTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACTTCGA
TGTCGATAATTCACCAGTACCTGTGGTGACGTAGCATTGTCTATTGGTAA
TGGGTAATTCTATTATCAATTGGATCATTAGGTTGAAACGAATTCGAAAT
TATGATAATAATAAACAATTATTGAATGCACacttaattttcataaaatg
acAAATCACCCTATTTGAGGAGGATTTTTTTTAGAGAaagattaaaataa
taattaatatacttggattattttttttttgaaagaattttgttatCTTG
ATGACTATATCAATTTAGAATCAAAAACGGTTGAAAAGGTCTAACACAGA
ACGCACAGAGAGACACCTGACACCTTATGTTATTCGAAAGGGAAGCGACT
GGGTTGTGAGGGTGGCCCAGAAAGTCTTGCACTTTTTCAGCATATAAGAT
TCCatcattttaaggaaaaacaacAACTGTGGTTTAACTCAATAAAAAGT
TTGTTGAACACTTGCACAATTGATCTTTAGTTAGTTATAC
Run BLAST on NCBI

protein sequence of TCONS_00049005-protein

>TCONS_00049005-protein ID=TCONS_00049005-protein|Name=TCONS_00049005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGCAFCKDPNQSNKNDSGEPDERSRLLDNQHQPSATKPITDDSNYHSTNS
ITKTDEQSQLSRILHKTAQNIIDVSAIEPHSMERSEYMDKMRHYIEKTTN
SDFNFSKQKQLNQVTHAPLNILLAPNISASDIKLITEASHNVSGALSQAK
ITCSDSLVENFDVDNSPVPVVT
Run BLAST on NCBI

transcript from alignment at scaffold_15:127841..133232-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049005 ID=TCONS_00049005|Name=TCONS_00049005|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at scaffold_15:127841..133232- (Clytia hemisphaerica)
CTCTCAAAAAATTAAGATTAGAGATATATTGCAAGTATAGGTGATTTCAG
TACCTAACTCGAGATATTAAGCTTCAAAAAGCGCAAAAAAGTGGATAAAA
CAGCTGTTTCTGGCTGAAATACACTGTTTTTAAGGGTTTTAAAAATTTTT
TAAATGAACGATATTTCTTTTTCAGACAGGTAAGAATATTATGGGATTTT
AAAAATACAAGAACAAATTTTTTTTAAATTGCATAATTTTGTATTTCAGA
TAAAAAAAACTTAAAATGGGATGTGCATTCTGTAAAGATCCAAATCAGTC
TAATAAAAATGTAAGTATATTATGCATGTTGATTCATTTTTGTGGCTATG
CATAAGATATTTGGCCTAGGGGGGGGGGCTCTTTCTGTTCGGAGGTCAAA
CTATTGGTAATAGCTCCTGAAATAATAGAGCTTTTGCCGTGAAATTTTCT
GTAAATTCCTAACTTTTATTTTGCTTCAAAATAAAAAAAAATTTGACACT
TAAATATTTTCACACCTTGAGCATGATGACATTTCTGNNCCAATACAAAT
TTATTTTTAATGTCAAATATATCGTTTAAACCGTAATTTATTGAATATTT
AGGATAAAATAAGCATTTTAAACTCAGGCAACTTTAGGCAACAATACAAT
AGCTATTTATAAGAACAAAGGAAATTTTCGGTTTTTGTTCACTTTGGGCA
TGATGAGTGACGTCATCAAAAAATTTTTTTTTCAAAAGTTACCTTACATG
ACAAGGATCTTGTGTGCCAAATTTTATCCAAAAAGACCCACTAGATCAAA
AGTTAAGAGGTGGTTCAGGAAAAGCCCCCCCCCCTAGTTCTGAACCGCCC
CTAAAAGCCTAGGTTGAATAGGGTTAACTTAGTGAGTTTTAACAATTATA
AGTCAACAAAAACATGTATTTAATGTTTGTTATGGGTGTTATGCTCCAAA
AATTCATGTGCATTGGAATTACTTTACCAATTCCTCTTTATTTAGACTAC
AGGCCACAGCCGCTAGCTTTCGAAAAGTAGTTTTTTCTTTGTCAAGTATA
TAAAAAGCAACATAGTTCCAAAAACATTGCATAAATCTGATTAAAATTAT
GATAGTCAAAACCAAAGTCCATTCACTTTAAGTGTACATTCTTGTGTGTG
TTCTGATTCTTACTTTCCTTGCCATTTTTCGAACAATTGTTCAATTCTTT
AATCTTTCTAAAAAATTGTTGAAAACTGTTGAAAAGAAAATTTGGAGATC
AAAGATTTATGAAAAAAAATAATTTCAAAGATTTTTGTTACTCAAAACAA
AAAATAAATGTGAACAAAATAAACTCTTTAAATCTTTTGATGCCAGAAAC
TTCACTTTTAGGGTAAAAAGGTACTTTGAAACCTCCTGAGCCCCGCTATA
TTAATATACGCAATAATGATGAGTTCCAATAAGGACGAAATGCATACACC
TGCTCTGCTACCCAAATCTCCTGAGTGAATTTAGTTGGATAGAAATTTTC
ATTTCTTCACATATAAATATATTTTTAAAACCATAAACAATAATATCATC
ATAGTATAAGAAAGCCGCGGCTGGAATGATAACATCTGGATTTCTGTTGT
TCTATCTCTGTATTTGATGACTATTTGTTGATCAAGAAATAAGTAATGTA
GCATCTTTAATGGTAAATTTTATTGGTTTATCGTTAATACTTACTTCTCA
GTGCATTTTAGACATTAATGATATGCCCTTGATAATACACTTGCATTATA
AAATCATTGTGCAGGAAAGATCAACAATAAGAAATTTAAACAAGCACAAA
ATGGCTGGGCTAAAAGAACTCAAAAATTAATAAAGTGCCTCGAAATGCCT
TAACAATATTTCAGTGAAATCTTTTTAGAAATCAATGAAATAGTAAATCA
AGATACTTCTGTGAAAATTTCAAGCCAGCATCTTCAAAATTTATCTTTCA
AACTGACAGGAAAGTTGTCATTTTCAATATCGTTTCCACAAAATACCCCT
AAAATATGTCCAAAATTAGTTTTAAGTGTTCTATTGGGTACAGATTCAAA
GATATCTAGCAATAAAAAAACTTTTTGTGAGAGAAAATAAGAAAAAATTC
AATAAACTGACAATCTTGATGTTCTTATAAAGCTCGGAGACAGAGATAGA
ACAGCAATTAACTGAGAAGACAATGTGGTACATATTCCAGCCGCGGCTTT
CTTATACTATGATATCATTGATGAGAATATTTTAGTAATTTGTTTGTTAT
CGCTTATATAATGTTTATAAATAAATTTAGATTATCTAGGATTTCAAAAT
ATCTTATTTTTTAGGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTA
GACAATCAACATCAACCTTCCGCTACTAAACCTATCACGTAAGATTCATA
ATTTGTATAGAGGATGCTTTAACTTGAATTTTGAACTATCATACATCTNT
TTTTGTTAATTCTTTTTTTACCGTAAAGAAGATGCTCTAACTTGAATTTT
GAGCTATCATACACTAATTTGAAAAAGTAGTTCGAAAGTTATTTCCAAAA
AACTGACTTTTTTTCCATGTCGAAATTTCAAAAAATCATTAAAAACAGCG
AGCAAACTTTTCTTTTAACAATTACCTTCTTTACACATAAGAATACCAAA
AAATGCAACTGTGCTCATCAAAACTCGTTGCGGAATTTAAGAATTATGGT
AAAACAAGCTATTCCCATGTGGGATAATATTTTTGGAAAGGCTGAAAAAA
AATTTTGGAAATCTTCAAGAGAGTTTCAATGTTATGTGTGTGCTATGTGA
GAAAATGTTTGAAAAAAATAGATCACTATTCCTCGACTAGTTGCTCAAAG
AACTTGGGTCTGCATTTAGTTAGCTGGAATTGGAAATGTTCATGACGTGC
AAATAAGATAGAGAAACTGTTGGCAAAATATAAGATAAGAGAAAAAGCAA
TAAAAAAACAATGAAATTGTGTTTTTGTCATTTTGTCTTATTTATAGCGT
GATTGCTGTTTTTAATGATTTTTTGAAATTTCGACCTGGAAAAAAAAGTT
AGTTTTTTAAAAATAACTTTCGAACTACTTTTTCAAATTTAATGTATGAT
AGCTCAAATTCAAGTTAAAGCATCCTCTATACAATAAAGAAAGAATGAAC
AAAAAAGCTAAATCCTGAAGCTCGCAATATCTCGACAAAGTTGTATACTT
TTTTTTGGCGCACCCGGTATATATTGCATGACTGAAAATAAATAAATTAT
GAATTTTCTTTTTGATTTACAGGGATGACTCCAATTATCACTCTACAAAT
TCTATAACGAAAACAGACGAACAGTCACAATTGAGTAGGATATTACACAA
AACAGCACAGTATGTCGACACTTTTCAAAAAATATTTCCTTTGTTTTTAA
GGCCGTTAAGGTAGAGTCTAAAAATCTGTGGAAGCCTTGAAAATTGTCTG
ATATTTTTGCATTTTTGGATTTTACATACCCATTCCTGGCGTGGAGTCCG
AATATATTGATTTTTCCCTCTGGGGACAATAGTTTTTTTGCCAAGTTGAG
CTTGAGGCTAAAACATAGGGCCAGTCTTGAGACCCCAAAAAAGAGTCCCA
TTTGGCTGAAATCTTACACAAATACCTGGTACAAAAATCAAAATTCTGAT
TTTTTAGCTTGGGGACAACATTGTCCTAACACAAGGCTTAAATTTAAGTC
AGCTTGTTGTTGACTTCATTAACTGAAGTGTTATATGCTTGCTTTTTAAT
GTGGAACGTTTTTTTTTTCATTTTTCAAAGATTTGGTTTTTATGGGTTTG
GAGGGGTTTCTGGCTTGCTCAGTTTGGCATTCCAGTATTCAAGGTGAACC
AGTGGTGCACATATTTGACTATAATATATCAATTTAATTCGAATTTTAGA
AATATAATAGACGTGTCAGCAATCGAACCTCACAGTATGGAACGTTCAGA
ATATATGGATAAGATGAGACATTATATGTAAGTTTTTTTAAGAGCTTTTG
TCCAAAAGCCCCTACACATACACCTTTTTAGAGGGGTGTGACCACCCTCT
ACGTCTATTTACATGAAAACTTGTCAACTTAATTTAACTTTTATTCGTGG
TCTGTGATGGTTTTGATCGCCTTGATTGTTGATATAGGCTCGTTTTCTCT
TGTGTTCTTTTCTATTACCGAAACATTTACAAGCACTTCCTTTTAAACCT
TTCTTAGAGGGGAATGGGGAATGGTTTGTTATCTTCGGTAAAAGGATAGC
TCTTATTGCCAGCATTCTGTATGAAGAATGAAATATTAACTTTACTGATA
CTTTACTTCTAAAATATCCTTTAGAGAGAAGACTACGAACAGTGATTTCA
ATTTTTCAAAACAAAAGCAACTGAATCAAGTTACACATGCTCCACTGAAC
ATTTTATTAGCGCCCAACATCAGTGCATCAGATATCAAATTAGTAAGTAC
AACTCATATTGGATTGTGGTACATTCTTGTACATTTTTATCAAATCGATT
ATTTTCTAGTAGCGAGAAAGCATGATTCATTTTTTGTTTCTTATCATTAC
TGGTATTTGTCGAGGGTTGGCATAACTGTAAAATTAGAGCAGCACAAGGC
TAGCACGAGCTAAGGTTAACAAATAATAGTGTGTTCTGCTCGAAAGTAAA
ACAACATCAAACTTCTCAGTCTCCCCGTGGTATTACCAGATCTGGGCTAT
TACAAAAAAAGTGGAGCTTATATAACTGCGTTTATGATCTTGGAAATGTT
TGTAACTAGGGATTTTTTCTACAAATACTAACGACTTTCATTCAAATTCA
ATTGCGTTTATGTTTTCAGATAACAGAAGCTAGTCACAACGTATCTGGAG
CTTTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACTTC
GATGTCGATAATTCACCAGTACCTGTGGTGACGTAGCATTGTCTATTGGT
AATGGGTAATTCTATTATCAATTGGATCATTAGGTTGAAACGAATTCGAA
ATTATGATAATAATAAACAATTATTGAATGCACACTTAATTTTCATAAAA
TGACAAATCACCCTATTTGAGGAGGATTTTTTTTAGAGAAAGATTAAAAT
AATAATTAATATACTTGGATTATTTTTTTTTTGAAAGAATTTTGTTATCT
TGATGACTATATCAATTTAGAATCAAAAACGGTTGAAAAGGTCTAACACA
GAACGCACAGAGAGACACCTGACACCTTATGTTATTCGAAAGGGAAGCGA
CTGGGTTGTGAGGGTGGCCCAGAAAGTCTTGCACTTTTTCAGCATATAAG
ATTCCATCATTTTAAGGAAAAACAACAACTGTGGTTTAACTCAATAAAAA
GTTTGTTGAACACTTGCACAATTGATCTTTAGTTAGTTATAC

Coding sequence (CDS) from alignment at scaffold_15:127841..133232-

>TCONS_00049005 ID=TCONS_00049005|Name=TCONS_00049005|organism=Clytia hemisphaerica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_15:127841..133232- (Clytia hemisphaerica)
ATAACAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAAT
CACGTGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAG
TACCTGTGGTGACGTAGAGAGAAGACTACGAACAGTGATTTCAATTTTTC
AAAACAAAAGCAACTGAATCAAGTTACACATGCTCCACTGAACATTTTAT
TAGCGCCCAACATCAGTGCATCAGATATCAAATTAAAATATAATAGACGT
GTCAGCAATCGAACCTCACAGTATGGAACGTTCAGAATATATGGATAAGA
TGAGACATTATATGGATGACTCCAATTATCACTCTACAAATTCTATAACG
AAAACAGACGAACAGTCACAATTGAGTAGGATATTACACAAAACAGCACA
GACTCTGGAGAACCTGATGAAAGATCAAGGCTATTAGACAATCAACATCA
ACCTTCCGCTACTAAACCTATCACATGGGATGTGCATTCTGTAAAGATCC
AAATCAGTCTAATAAAAATATAACAGAAGCTAGTCACAACGTATCTGGAG
CTTTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACTTC
GATGTCGATAATTCACCAGTACCTGTGGTGACGTAGAGAGAAGACTACGA
ACAGTGATTTCAATTTTTCAAAACAAAAGCAACTGAATCAAGTTACACAT
GCTCCACTGAACATTTTATTAGCGCCCAACATCAGTGCATCAGATATCAA
ATTAAAATATAATAGACGTGTCAGCAATCGAACCTCACAGTATGGAACGT
TCAGAATATATGGATAAGATGAGACATTATATGGATGACTCCAATTATCA
CTCTACAAATTCTATAACGAAAACAGACGAACAGTCACAATTGAGTAGGA
TATTACACAAAACAGCACAGACTCTGGAGAACCTGATGAAAGATCAAGGC
TATTAGACAATCAACATCAACCTTCCGCTACTAAACCTATCACATGGGAT
GTGCATTCTGTAAAGATCCAAATCAGTCTAATAAAAATATAACAGAAGCT
AGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAATCACGTGTAGCGA
TAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAGTACCTGTGGTGA
CGTAGAGAGAAGACTACGAACAGTGATTTCAATTTTTCAAAACAAAAGCA
ACTGAATCAAGTTACACATGCTCCACTGAACATTTTATTAGCGCCCAACA
TCAGTGCATCAGATATCAAATTAAAATATAATAGACGTGTCAGCAATCGA
ACCTCACAGTATGGAACGTTCAGAATATATGGATAAGATGAGACATTATA
TGGATGACTCCAATTATCACTCTACAAATTCTATAACGAAAACAGACGAA
CAGTCACAATTGAGTAGGATATTACACAAAACAGCACAGACTCTGGAGAA
CCTGATGAAAGATCAAGGCTATTAGACAATCAACATCAACCTTCCGCTAC
TAAACCTATCACATGGGATGTGCATTCTGTAAAGATCCAAATCAGTCTAA
TAAAAATATAACAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAG
CTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAAT
TCACCAGTACCTGTGGTGACGTAGAGAGAAGACTACGAACAGTGATTTCA
ATTTTTCAAAACAAAAGCAACTGAATCAAGTTACACATGCTCCACTGAAC
ATTTTATTAGCGCCCAACATCAGTGCATCAGATATCAAATTAAAATATAA
TAGACGTGTCAGCAATCGAACCTCACAGTATGGAACGTTCAGAATATATG
GATAAGATGAGACATTATATGGATGACTCCAATTATCACTCTACAAATTC
TATAACGAAAACAGACGAACAGTCACAATTGAGTAGGATATTACACAAAA
CAGCACAGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTAGACAATC
AACATCAACCTTCCGCTACTAAACCTATCACATGGGATGTGCATTCTGTA
AAGATCCAAATCAGTCTAATAAAAATATAACAGAAGCTAGTCACAACGTA
TCTGGAGCTTTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTGGA
AAACTTCGATGTCGATAATTCACCAGTACCTGTGGTGACGTAGAGAGAAG
ACTACGAACAGTGATTTCAATTTTTCAAAACAAAAGCAACTGAATCAAGT
TACACATGCTCCACTGAACATTTTATTAGCGCCCAACATCAGTGCATCAG
ATATCAAATTAAAATATAATAGACGTGTCAGCAATCGAACCTCACAGTAT
GGAACGTTCAGAATATATGGATAAGATGAGACATTATATGGATGACTCCA
ATTATCACTCTACAAATTCTATAACGAAAACAGACGAACAGTCACAATTG
AGTAGGATATTACACAAAACAGCACAGACTCTGGAGAACCTGATGAAAGA
TCAAGGCTATTAGACAATCAACATCAACCTTCCGCTACTAAACCTATCAC
ATGGGATGTGCATTCTGTAAAGATCCAAATCAGTCTAATAAAAATATAAC
AGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAATCACGT
GTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAGTACCT
GTGGTGACGTAGAGAGAAGACTACGAACAGTGATTTCAATTTTTCAAAAC
AAAAGCAACTGAATCAAGTTACACATGCTCCACTGAACATTTTATTAGCG
CCCAACATCAGTGCATCAGATATCAAATTAAAATATAATAGACGTGTCAG
CAATCGAACCTCACAGTATGGAACGTTCAGAATATATGGATAAGATGAGA
CATTATATGGATGACTCCAATTATCACTCTACAAATTCTATAACGAAAAC
AGACGAACAGTCACAATTGAGTAGGATATTACACAAAACAGCACAGACTC
TGGAGAACCTGATGAAAGATCAAGGCTATTAGACAATCAACATCAACCTT
CCGCTACTAAACCTATCACATGGGATGTGCATTCTGTAAAGATCCAAATC
AGTCTAATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031129XLOC_031129Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049005-proteinTCONS_00049005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049005-exon-scaffold_15-1575043694:132923..133232TCONS_00049005-exon-scaffold_15-1575043694:132923..133232Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1575043694:130845..130918TCONS_00049005-exon-scaffold_15-1575043694:130845..130918Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1575043694:129874..129960TCONS_00049005-exon-scaffold_15-1575043694:129874..129960Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1575043694:129256..129333TCONS_00049005-exon-scaffold_15-1575043694:129256..129333Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1575043694:128791..128908TCONS_00049005-exon-scaffold_15-1575043694:128791..128908Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1575043694:127841..128413TCONS_00049005-exon-scaffold_15-1575043694:127841..128413Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:132923..133232TCONS_00049005-exon-scaffold_15-1510915933:132923..133232Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:130845..130918TCONS_00049005-exon-scaffold_15-1510915933:130845..130918Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:129874..129960TCONS_00049005-exon-scaffold_15-1510915933:129874..129960Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:129256..129333TCONS_00049005-exon-scaffold_15-1510915933:129256..129333Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:128791..128908TCONS_00049005-exon-scaffold_15-1510915933:128791..128908Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1510915933:127841..128413TCONS_00049005-exon-scaffold_15-1510915933:127841..128413Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:132923..133232TCONS_00049005-exon-scaffold_15-1491911889:132923..133232Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:130845..130918TCONS_00049005-exon-scaffold_15-1491911889:130845..130918Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:129874..129960TCONS_00049005-exon-scaffold_15-1491911889:129874..129960Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:129256..129333TCONS_00049005-exon-scaffold_15-1491911889:129256..129333Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:128791..128908TCONS_00049005-exon-scaffold_15-1491911889:128791..128908Clytia hemisphaericaexon
TCONS_00049005-exon-scaffold_15-1491911889:127841..128413TCONS_00049005-exon-scaffold_15-1491911889:127841..128413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:127841..133232 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.1855	49.6885	30.5419	26.651	39.7494	32.103	38.5302	39.8522	40.7172	35.2788	33.9615	25.3149	22.4161	19.5767	35.603	35.4577	38.9413	30.1766	19.263	28.7238	18.382	19.3132	33.4949	37.6352	23.8354	29.2807	23.589	20.7639	38.8128	33.6642
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028209LAMTOR1/MEH1
Vocabulary: Biological Process
TermDefinition
GO:0032008positive regulation of TOR signaling
GO:0001919regulation of receptor recycling
GO:0042632cholesterol homeostasis
GO:0032439endosome localization
GO:0007040lysosome organization
GO:0043410positive regulation of MAPK cascade
GO:0071230cellular response to amino acid stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0045121membrane raft
GO:0031902late endosome membrane
GO:0071986Ragulator complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071230 cellular response to amino acid stimulus
biological_process GO:0042632 cholesterol homeostasis
biological_process GO:0032439 endosome localization
biological_process GO:0007040 lysosome organization
biological_process GO:0043410 positive regulation of MAPK cascade
biological_process GO:0032008 positive regulation of TOR signaling
biological_process GO:0001919 regulation of receptor recycling
cellular_component GO:0031902 late endosome membrane
cellular_component GO:0045121 membrane raft
cellular_component GO:0071986 Ragulator complex
Blast
[Close]
BLAST of TCONS_00049005 vs. Swiss-Prot (Human)
Match: LTOR1 (Ragulator complex protein LAMTOR1 OS=Homo sapiens GN=LAMTOR1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.302e-20
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 2 
Query:  266 MGCAFCKDPNQSNKNDSGEPDERSRLLDNQHQPSATKPITD-DSNYHSTNSITKTDEQSQLSRILHKTAQNIIDVSAIEPHSMERSEYMDKMRHY---IEKTTNSDFNFSKQKQLNQVTHAPLNILLAPNISASDIKLITEASHNVSGALSQAKITCSDSLVENFDV 754
            MGC +  +    N++   + +ER  LLD    P  TK +   + NYHS  S  +TDEQ+ LS IL KTA NIIDVSA +   ME+ EYMD+ R Y   +   ++S  ++ K   L  +T  P  +L +  I  SD++ ++  +     ALSQ ++   + LV  F +
Sbjct:    1 MGCCYSSE----NEDSDQDREERKLLLDPSSPP--TKALNGAEPNYHSLPS-ARTDEQALLSSILAKTASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGI 160
The following BLAST results are available for this feature:
BLAST of TCONS_00049005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LTOR19.302e-2035.33Ragulator complex protein LAMTOR1 OS=Homo sapiens ... [more]
back to top