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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049000 ID=TCONS_00049000|Name=TCONS_00049000|organism=Clytia hemisphaerica|type=transcript|length=552bp
attgtctgtttgatgaaaatattcccgtacggagacctctgcgatgaagt
atgatttatagaGAGCACTTCTatcatcgtctcccctctctcaccaacat
ttcatcgcagcggtcggtttgaaaattctcaaatgagaaaagacaatgac
aacagactcTCTAtggcaataaattttgaaattagccgtagatactggat
ctgtgtacagacaagtaTTGGACTGGTGCTATTCTATTTTTCAGTCCTAC
GATCATCTTTGGCCCTGATTTTGTCCATCAAGCTGGTTTCAGCAGGAGGA
TGTGCTAGTGGGTACAGAGACGTGAAGGGGAAATGTGTAAAAAGAATGAA
TCACAAAACAGATTACCAATCTGCTAAAGCGTTTTGTGAGGCTGAGGCCA
CTTTGACAGGGGAGGATGTCACGATGCTTTACTGGAACGGAACCGAATCG
GGCCATTGGACAGGCGGTGGCGGTGTTTTATCCAAATCAGATTTTTCTGG
GCAAATCTATTGGACAGGAGCAAGGAGAATTAAGGGACGATACATATGGG
GC Run BLAST on NCBI protein sequence of TCONS_00049000-protein >TCONS_00049000-protein ID=TCONS_00049000-protein|Name=TCONS_00049000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MRKDNDNRLSMAINFEISRRYWICVQTSIGLVLFYFSVLRSSLALILSIK
LVSAGGCASGYRDVKGKCVKRMNHKTDYQSAKAFCEAEATLTGEDVTMLY
WNGTESGHWTGGGGVLSKSDFSGQIYWTGARRIKGRYIWG Run BLAST on NCBI transcript from alignment at scaffold_15:607432..608644+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049000 ID=TCONS_00049000|Name=TCONS_00049000|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at scaffold_15:607432..608644+ (Clytia hemisphaerica)
attgtctgtttgatgaaaatattcccgtacggagacctctgcgatgaagt
atgatttatagaGAGCACTTCTatcatcgtctcccctctctcaccaacat
ttcatcgcagcggtcggtttgaaaattctcaaatgagaaaagacaatgac
aacagactcTCTAtggcaataaattttgaaattagccgtagatactggat
ctgtgtacagacaagtaTTGGACTGGTGCTATTCTATTTTTCAGTCCTAC
GATCATCTTTGGCCCTGATTTTGTCCATCAAGCTGGTTTCAGCAGGAGgt
atttatttcaatatttttcctttttatcaTTTAATGTTTAAGTGCGCATT
TGAACAAAAATCATATCCCTTCAAACATCAAAGattacacgggttgcaaa
attttatcaatGCAGCGGAACGAGATGggcttttacaagctcttatttaa
tttggttggtcgttaatcagtaataaaacaattttgttactttttctaaa
gaacgcgtcatttatTAATTCAAaagaccaattattaaagtatcttataa
aaactcagTGCTTTCTCTGGAGATTTCCCTAGGCCGAACTGAATTAGGAG
CTCAGAAAGCTGTGCTCGTAATGCAAAATCAAAACGTCAGCTTTCATTTG
TTCCTGGATTTGAAGTCGTTGCACTACAGTGTAACTTTGTAAACTCAGAT
TAtcttatgacgtattgttttgagaactttcctgtgagagagGGAACTCG
cttcagccaacaccagggtattctctagCGTcgatcagtaacgtaaataa
agcctgggatacacggagACGAGGTTGCCTAATCAGTTGATGAAGTCATC
ACTATCATGAGCGACggcaagatttttcaaaataagaaaacaatgGCGCC
TGGTAAGGATGCGTGAACATGCCAATTTTCTAATAAATCACTTAATCATT
CCCTTTAAGGATGTGCTAGTGGGTACAGAGACGTGAAGGGGAAATGTGTA
AAAAGAATGAATCACAAAACAGATTACCAATCTGCTAAAGCGTTTTGTGA
GGCTGAGGCCACTTTGACAGGGGAGGATGTCACGATGCTTTACTGGAACG
GAACCGAATCGGGCCATTGGACAGGCGGTGGCGGTGTTTTATCCAAATCA
GATTTTTCTGGGCAAATCTATTGGACAGGAGCAAGGAGAATTAAGGGACG
ATACATATGGGGC Coding sequence (CDS) from alignment at scaffold_15:607432..608644+ >TCONS_00049000 ID=TCONS_00049000|Name=TCONS_00049000|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_15:607432..608644+ (Clytia hemisphaerica)
atgagaaaagacaatgacaacagactcTCTAtggcaataaattttgaaat
tagccgtagatactggatctgtgtacagacaagtaTTGGACTGGTGCTAT
TCTATTTTTCAGTCCTACGATCATCTTTGGCCCTGATTTTGTCCATCAAG
CTGGTTTCAGCAGGAGGATGTGCTAGTGGGTACAGAGACGTGAAGGGGAA
ATGTGTAAAAAGAATGAATCACAAAACAGATTACCAATCTGCTAAAGCGT
TTTGTGAGGCTGAGGCCACTTTGACAGGGGAGGATGTCACGATGCTTTAC
TGGAACGGAACCGAATCGGGCCATTGGACAGGCGGTGGCGGTGTTTTATC
CAAATCAGATTTTTCTGGGCAAATCTATTGGACAGGAGCAAGGAGAATTA
AGGGACGATACATATGGGGCatgagaaaagacaatgacaacagactcTCT
Atggcaataaattttgaaattagccgtagatactggatctgtgtacagac
aagtaTTGGACTGGTGCTATTCTATTTTTCAGTCCTACGATCATCTTTGG
CCCTGATTTTGTCCATCAAGCTGGTTTCAGCAGGAGGATGTGCTAGTGGG
TACAGAGACGTGAAGGGGAAATGTGTAAAAAGAATGAATCACAAAACAGA
TTACCAATCTGCTAAAGCGTTTTGTGAGGCTGAGGCCACTTTGACAGGGG
AGGATGTCACGATGCTTTACTGGAACGGAACCGAATCGGGCCATTGGACA
GGCGGTGGCGGTGTTTTATCCAAATCAGATTTTTCTGGGCAAATCTATTG
GACAGGAGCAAGGAGAATTAAGGGACGATACATATGGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049000-exon-scaffold_15-1491911889:607432..607729 | TCONS_00049000-exon-scaffold_15-1491911889:607432..607729 | Clytia hemisphaerica | exon |
| TCONS_00049000-exon-scaffold_15-1510915933:607432..607729 | TCONS_00049000-exon-scaffold_15-1510915933:607432..607729 | Clytia hemisphaerica | exon |
| TCONS_00049000-exon-scaffold_15-1575043694:607432..607729 | TCONS_00049000-exon-scaffold_15-1575043694:607432..607729 | Clytia hemisphaerica | exon |
| TCONS_00049000-exon-scaffold_15-1491911889:608391..608644 | TCONS_00049000-exon-scaffold_15-1491911889:608391..608644 | Clytia hemisphaerica | exon |
| TCONS_00049000-exon-scaffold_15-1510915933:608391..608644 | TCONS_00049000-exon-scaffold_15-1510915933:608391..608644 | Clytia hemisphaerica | exon |
| TCONS_00049000-exon-scaffold_15-1575043694:608391..608644 | TCONS_00049000-exon-scaffold_15-1575043694:608391..608644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:607432..608644 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016186 | C-type_lectin-like/link |
Blast
The following BLAST results are available for this feature:
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