TCONS_00048984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048984
Unique NameTCONS_00048984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048984 ID=TCONS_00048984|Name=TCONS_00048984|organism=Clytia hemisphaerica|type=transcript|length=562bp
aagcaataaaaatcaTATGAAGCGAggcagtttttttttcttggaaaCAA
TCATTATTGAAATCAACGGTGCGGATTTGCTTTCAAATGACGGTTGTTGA
TTTCATTTGTGGCCATGGTTCAACAACGGTATTATATCAGTCACGTGCAA
AATACATCCATTTTGGTCCTGGAGATTGGTTGATATAGCGATATGTATCC
ATCTCCAAGCAGATTCTGATTACCCAGTGTATGGCACCTAACCACTTTAA
AGTCATTAGGCAACGTCGTCTTGAATGATTTGGCCAGGTCGGATGAGCAC
ATTCACCACTTGAGAGCATAGCGTGGTTTGCGCTAAATGGGTGATCTTTT
ACGAGATTAAGGAATCACTAAATCTCTATAAAAGACCAATATCAAGAACT
GCAGAAATTCAAACAGATTCAACCATTGCAAAGAAGaagtcaaaataaga
aagatAACACAATACAAGCTACCAATTAAGTTGTTGTTTATACAAAATGC
CGTGGTTCTATTGTTCAATTGTGATTTCGGTATCACTAATTATTGGAGCA
AACTCGCAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_15:270531..277323+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048984 ID=TCONS_00048984|Name=TCONS_00048984|organism=Clytia hemisphaerica|type=transcript|length=6793bp|location=Sequence derived from alignment at scaffold_15:270531..277323+ (Clytia hemisphaerica)
aagcaataaaaatcaTATGAAGCGAggcagtttttttttcttggaaaCAA
TCATTATTGAAATCAACGGTGCGGATTTGCTTTCAAATGACGGTTGTTGA
TTTCATTTGTGGTAAGTTGAGACATCTCTTTATCTATCTGCTCTTGTGAT
AAAACTaaggattttttttgcatttgatattccgtttttgtttttttaag
actgTTATTCCGGTATTTGAGATACCTACCGgtaccatagatttataaag
cccgaggggctagatgtcgggctttaagccatcacaggcaaaaaaaagtg
aatatcggaaaaccCGCTAAGCTTCTAATTGGTcaatcgctgaaattcta
ttgtaatgtcacgtgactttaggtaggatttcctacttaatcacggcaca
cttttcagcaaaggCTTTACTTCTATGACCGGTTCGggtatttgataaaa
aaaatccatttttagTATTTAGCGACAAAATTACTGCTTTTCCGTTATCT
TTTTTAACCGCATATAGTGGTTTTGTACGATCTTTTTTATTGATGCCGGT
ATTCCAGTTTTTGGAATCTCGCGAAAAATGGGCTATATTTTGCAAACCGT
GAAGTGGTCGAAACCACTACATAAATCACTGAAAGATGAAATCCAAAGGC
TTTGCTGATAGACCTCCTGCAGTTCAGGATACCGTTACCAATCTTTAATA
AAAGATCTATAATCAGATATATTTTAAATGCAAATTCTTAACGAGATAAA
TAATGCAGATACTTTATATATTAGACTATAGATCACTTAAATCCAAAAGa
attatttcactttttaacTTTATTCAGGCCATGGTTCAACAACGGTATTA
TATCAGTCACGTGCAAAATACATCCATTTTGGTCCTGGAGATTGGTTGAT
ATAGCGATATGTATCCATCTCCAAGCAGATTCTGATTACCCAGTGTATGG
CACCTAACCACTTTAAAGGTGCGTAGTAaagcgaccgtagcatgaaggca
gagcatccagctacggtgcgcaagttgtgggttcgaaccccagccgggtc
ataccaaagattcccaaaatggtacttgatgcctctctgcttgatgctca
gcaactaaagagacggatcaagggtaagtggagaaaaccagggaaaggag
tggcgccctccccttccttcgggtagacagctatacgaaaagggagcctt
tgggtcgccctcgactgcggtcgcaaacttacttactttaaaGGTCATGG
CTCCATAAGAGAATCTTCACAGGTTAGCAGACCACTTTGATCTTTTTCGT
GAAGATTTCGGATTATTTAATGAGCTTTTGATCGCGTTGATTGattaaag
caaaacaatcgcaTCGAAAACAAAAACTAATCATAAACATGAGACCTTGT
GTACCGCAGTCATATTTGCTTATTCTTTTAGTCATTAGGCAACGTCGTCT
TGAATGATTTGGCCAGGTCGGATGAGCACATTCACCACTTGAGAGCATAG
CGTGGTTTGCGCTAAATGGGTGATCTTTTACGAGATTAAGGAATCACTAG
TAAGTCATATCCGTAGTATTCTCGGTCACTAGTAGTAAAGCTTCACGCCC
CAGCTAATCAGTTATTGACAAATAACCACACCCCGCTCTTTATCATAGCG
CTCCGCATTTCACacgtcataattatttcaaTAAGAAATTTGTACGAGTT
CCGATCCCACAGTTCATTTCGAAATGATTGGAGAATAAAGTTAttacctt
tcttttgatattgtaaTTAATTAACGTGCAAGGGCAATTAACACAAATGA
GGATGGGATTGAAAGTTGTACAAACGAATAAATTTGACCAGATTTGttac
tatttttagattcgtCGCGTTGTGCTATTCCGTTGAAGCTGTTTTAGCAC
TAGACATCATAAGCTATTTTTTCCTATTTACTAcagttttttacattttt
ttttttgaaataatgaagACATGCTAAGCTTGTCAATCAAAGCGACAGAG
TTATAATACGTTTATTATGATTAATTGATGTATAATCATTAAATTATCAT
TATCATTAAATTCCGTATTCCGTCGACTctcatctttttttaaaaaacgt
ttctttcaaaattagaatatAGAAAAATTTGTACTTCGCTACCTCTAATA
TTTAATAAGCATTGGAGAGTTCATGCAACTAACCCTTTTGAGGCGACAGG
AGGCGACCGACCGAAGTTGAACATCCCACAGTTTTGACCAGTAAAATCGA
GGGCGTTAAAGTTGGTATAAGTTATCGAACGTAGGAAAATGAAAAGCTAG
TCGTCTCTGCACGACACATggtgttttttataataacaaactGTATGAGA
AAATAAGACTTTGATggacaaaattttaagaataatttaagaCTTTGcga
tttcttgggaaaatggacaaaatactcacaaaatggcgaaactaacatgt
taagaaaatctttaggcttaaaactcaataagttaagaacatacaGAGGC
TTAATTCTTGGACGTTCTTATTAAGGAATCGAAAACTCGTTGTTTGACAT
TTCTATTTAACCTGTGAAAGTAAAAGCTGTAAAGTACTCATCTGACTTAA
TGATGCAATCGATCTCTGCTTGGGAAGGGGGAAATGTAAGAAAATTTCAT
AGAACTGCTTTTCAAGATGTACAGGCATGCAATAATAATGAATCAATAAT
GAACTCTTTAGATTCTATGAACATCTGATGGTATGAtgtttcttctttgt
ttttagatCCATGATTTTAAGTCCAAAAATGGGCAAATCTACATTTCCAG
AACAATAAGTAAAGTTTCTTGTAATTCTCTTATAGGTTATTAAGTTATTA
AAAATCATGAACTTGATGTAAAATACCACATGTTgtgaacattttcaatt
ctaGCTGTCTCTAGAAGGTCCTTATTCTTACCAAGGGTTTCAAAATTTGT
CCAAACACCTTTAATGAGATTCACtattaatatatattttttcaattttc
aatcttaaaaagataattttaaaatttgaaaataaaaaaacttacaaaat
tttatattatGTTTAATGTCTAACAGAATCTCGTTGAAAAGTTTCCTCAA
aggttaattttgaaaaatgtattgGTCAAAAAGGcaattttgagttattt
ttGGGGTGGTGTATTGAAATCTGACCTCAAAATCAATTTGTACATTGTGT
ACCAAGTGAAAAGGGGTGGTGGTCCTTTTCAAAATTAtctaaaatcagtt
agtactcATAGTGTTCCGggctaactgcttgaccccccatGCTTGAGGGG
tcaattgtttaaaaatttgttttctgtAAGTAGTAAGTCTAAGTGATAAA
TAAATTGGTGGTGAAGGAAAATTATACATTTGCATTCTTTTCGATCAATG
ATGTTTCCTCTACCAAAACTTCGCGGAAAATTATGGGTTAACCCCTCTTT
ATTCCCTCTTAAAATtccaaattgaaaaaatattttttctccaatGAGAA
GATTAAATCTGAAGTTGGAGGGTACAGTACTAATCTGATAGAATTAGTTC
AAAAGGCCCATACTTTATTTAAGGTAAAAATCTAGTTTTACTtacacccc
tatctcacagccccggtgaaacttttttcctcagtggggataaaaatata
aaaattccaatggggatagaaattatatttttccaaggttaaaaaatcca
gtggggactgccacttttaaacattgaattccgaatggggatgaaatcaa
agtaaatttcccagtggggctgaaattccagggtattttccccaTCGTGG
ACGAAATtgttgccaaattttccagtgggtttgtgacacaggggtgttta
ctTGAACATAAGTCGAGAAAAGGACACTTCTTTTGTGGGTTGATTTGGAA
GATCAATCAAATGCAGGTGTTGAAAGGGAAATTTTATATGAGGAGAGTTT
GTACACATCAACCTATAATGACCATAAAAGGTTTAGATTTGATATTTAAC
CATATATAGACAAAGTTATCTATCCCTTTACGACAGATTGTGATAATTTG
GTCTAAATTTAAACTATTCCTTATAGGGTACGGGCCGTTGTAAATTCGAA
CGATTGGTCAAAAAACAAGAGACGTTAACGAAAGAATTGAATTCTTAGAA
ACTAAAACGCCACACGAGAGACACGatttcaaaatatcattttccACTAC
TTTAAAAACTAAAACTGAACGCCTACGCAACTCCATTGAGTCGTATATAG
TAAATGAAACAAAAAGCTAAACAAATAGGTAACGTACACGGTAATCcgat
ttaagaaaaaaataggaAGCTTAAGTTAAATATTCGAAATATGCTTGTAT
GCTTGtaccataaattttttttctcacttttttccTCAATCTCGACCCTA
ATAAAAGTTTTACAAAAGGGCAGTACAAATTCATCTTCCTGTAAAcctat
gaaaatgcttcctacagGCCtaacccctgtgtcacagacccactaggacC
ATCACCCCCAATGGAAAATTTTATGgcaaaaataccctagaatttcatcc
ccattcgaaattagATATTTAGATATTGCACTCCAAAGCCATCCTCGCTG
GATTTTTTAGCCTTGGcacaatagaattttcatctGGATTGGAATTTCAG
TAGAAATTCTTTATCCCCGCCTTGTggggaaaagttccaccggggctgtg
agacataCAGGGTGTTACATAAAATCCTAAAAGATTCCATTCTTGTGTAC
AAAGATCACAGAAAACTTGGGTGTTGTTTTAAGGTGTAAGTGCACCGAAA
TGAATACAGGTGATTTAAACATAAACCTGGAAGCTGTTTTATGGTATGTA
CATCCAGGCTATCCACACACTTAGCCTCTTAGATATGGAAGTTTTTATTT
ACATCCATTTTAATCCATTCCCTAGTACTGAACTCCCGGAATCATCTGAT
AAGCGGGAAAATtcctaggcttctgctcatcctctagcgaaaataGTTTC
TTAtatatataggaagtatatctatagaggtctgcgattcagactagaaa
ATTCCCGAGGAAATTCTGGCGCCGATAATGAGTGGCTGTAGTATAAAGAT
AGGGAATTCGGCTAGGCCGTGCAAATTCACCTGGCAGGAGCATCCCAGAG
ACTACCAAAGTAGTACTTGATGTCACAATTAAAGGGTATAGGATCAAGGG
TAATTGGAGCAATTCAGGGAGAAAAAACGCGCCCTCCCCCACCTTGGGGT
AGATAGCTATGTAAAGGTGAGGGTGTCTACAACTGCGGTGACAAGAATAT
CTCGTTTTTAGAGAAATTTATGTATGGGAACTTTTTCATTAGCTGATTAG
CCTAGAGCTAGACTACTAATTAATATCAGTTTTAGCTTCTTTTACAGTAG
TAGAAAAACCTACCTAGATGTTTGCTTACTTTTCGAGTGTTTGAATTAGT
ATTACTATTCCAAATTCCCGTAcggctttttttcttctttttttctttga
ggCAGGATTGCTCCTACGTTTTGTGTTAAAAGAATAGTGGTCTGGAAATC
GAGACTATCAGCTGATTAGAAGTTTCGATATCTTCTAAAATCTACAGTAA
TTGAATAAGGCCATCGATTCCCATCTCAAAGAATTTGCTCATCAAAAAAA
GTTGTAAGCGGACGTTGTTTGCAATCCTGGTTCGCATTccttataacaaa
aaaaacCAAAGGGATACTGGCAGTCTATCTATAATTATTCCCTTTTTAAT
TATCGTATTTGATTGATTAAGCAGTACATTTGATAGAGGGAAATATAAGT
GAATTTCTTAGAGTACAACTGCTTACAAAAGCATATTAGCACTTACGCTT
CCTACATTTTTCACATTGTCCTTTGTCCAGAATCTCTATAAAAGACCAAT
ATCAAGAACTGCAGAAATTCAAACAGATTCAACCATTGCAAAGAAGaagt
caaaataagaaagatAACACAATACAAGGTAAGTGAGTAAGTTATAGTTT
CTAGGTTTAAAAAGTTTAGGTCCAAAGTGAAGTGTGATTGTTGAGAGTAG
GAGTAGTTTTTGGACTAGATGATGCGCTCAAAAGGTCTAAGTGAGAGGCT
TGGTTTGGTTGACGTTAGGGGAACCCGTTGATGCAGGTCTAGCGTTTATC
TCAttaagaaatatgaaaaaaagttattctctaatttttgtccccgcagA
AAATAACCAGATAaccaaatcctcactgcaaaatattgtgctatttttcc
atccccactggatcgctagaaaacaatagaattcaagtCCCCAGTCATAA
GCAACATGGggatatcaatccccatcgagtttcagttcgttatttttatc
cccacttgcTGAAAAAGTCCCACCGGGtcggtgagaagggggtgtattgg
ATAGCAGACTGTAAATTATCGTTACGTGTTACTAAGGTTGCTTAGTATAA
ACAAAACATAGATTATCGGCTACGGAGTGTGCAAGGTTGTTGGTTCAACT
CTGCTCCAGTCATACCTAGAAACTGAGAACTGGTAGTTGATGTCTTTCTA
CTTGATGCTCAGTTAAAAAGAAGGCAAAAGGGTAATTGGAGAAAGCCAGG
GAGAAGAGTAGCGCCCTCTCCTACCTTCGGATAGACAGCCAAGAGCATTT
TGGTCACCCTTGCAAACTAACTCAGTATTACTTCATTGATTCTTTTTAGC
TACCAATTAAGTTGTTGTTTATACAAAATGCCGTGGTTCTATTGTTCAAT
TGTGATTTCGGTATCACTAATTATTGGAGCAAACTCGCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031114XLOC_031114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048984-exon-scaffold_15-1491911889:270531..270641TCONS_00048984-exon-scaffold_15-1491911889:270531..270641Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1510915933:270531..270641TCONS_00048984-exon-scaffold_15-1510915933:270531..270641Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1575043694:270531..270641TCONS_00048984-exon-scaffold_15-1575043694:270531..270641Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1491911889:271358..271498TCONS_00048984-exon-scaffold_15-1491911889:271358..271498Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1510915933:271358..271498TCONS_00048984-exon-scaffold_15-1510915933:271358..271498Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1575043694:271358..271498TCONS_00048984-exon-scaffold_15-1575043694:271358..271498Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1491911889:271962..272079TCONS_00048984-exon-scaffold_15-1491911889:271962..272079Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1510915933:271962..272079TCONS_00048984-exon-scaffold_15-1510915933:271962..272079Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1575043694:271962..272079TCONS_00048984-exon-scaffold_15-1575043694:271962..272079Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1491911889:276411..276508TCONS_00048984-exon-scaffold_15-1491911889:276411..276508Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1510915933:276411..276508TCONS_00048984-exon-scaffold_15-1510915933:276411..276508Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1575043694:276411..276508TCONS_00048984-exon-scaffold_15-1575043694:276411..276508Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1491911889:277230..277323TCONS_00048984-exon-scaffold_15-1491911889:277230..277323Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1510915933:277230..277323TCONS_00048984-exon-scaffold_15-1510915933:277230..277323Clytia hemisphaericaexon
TCONS_00048984-exon-scaffold_15-1575043694:277230..277323TCONS_00048984-exon-scaffold_15-1575043694:277230..277323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:270531..277323 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201007	0	0.22759	0.222662	0	0	0.238937	0.485246	0	0	0.509118	0.401609	0.193588	0.425384	0.456554	0.613135	0	0.52512	0.428564	0	0.583035	0.522657	0.115235	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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