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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048977 ID=TCONS_00048977|Name=TCONS_00048977|organism=Clytia hemisphaerica|type=transcript|length=801bp
taGCACAGTATTCGGTCCCAACAAGATAAAGAAATTTGGAAACCCAGGGC
ACATAACACCATTATACGCGTTCGGGCAATTATTCCATGATTTCGTTAAC
GTTTTCCCGTTCCGTGAAATACACAAATTCTTCATGCTGCCGAGTGAATC
AAAACCTGTTGCATAAATAATGGTATCAACCGAATACGATGTAGCGTCAT
TAGTTTCGATACCGGTTTGAGTGATACAAGATATTTTCTGATCTACAAGT
TTCACTTTAGGATTATTAAAGCACGATTTCGGTGTTTGGATACACAGAGG
TGGAAAAACTAATCCAGCCGATCGCTGAAAAACGAACAACTCCCGAACTT
TACCGACAATACTCGGTATAAGTTGAGCTGCCGAACATCCGGTACCAACA
ACAGCTACTCGTTTTCCTGTTAAATCATAACCGAttggccagcgagatgt
atgcATAGAATCACCGGCAAAATCATCAATACCCGGGATATCAGGATATT
TTGGTATGTTCAACGCACCAATGGCTGATACTAGATGTGAACACGTGATA
GTTTCCTTCTTAGAAGTAGAAACCATCCAAACCTGGTATTCATCATCAAA
AACACATTCGGTCACTTTAGTATCAAGTTTAATATGTTCATGCAAACCAT
AATGATCAGCGAGTTTTTCTATATAAGCCAAAGTTTCTGCTTGACCTGGA
TTCGGGCAAGACCATTCATGTTTAAAGAACGAAAAACTATACTGATATGC
CGGAACATCACATGCGCACCCAGGGTATTTATTCCACCACCAGGTCCCAC
C Run BLAST on NCBI transcript from alignment at scaffold_15:59228..60274+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048977 ID=TCONS_00048977|Name=TCONS_00048977|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at scaffold_15:59228..60274+ (Clytia hemisphaerica)
taGCACAGTATTCGGTCCCAACAAGATAAAGAAATTTGGAAACCCAGGGC
ACATAACACCATTATACGCGTTCGGGCAATTATTCCATGATTTCGTTAAC
GTTTTCCCGTTCCGTGAAATACACAAATTCTTCATGCTGCCGAGTGAATC
AAAACCTGTTGCATAAATAATGGTATCAACCGAATACGATGTAGCGTCAT
TAGTTTCGATACCGGTTTGAGTGATACAAGATATTTTCTGATCTACAAGT
TTCACTTTAGGATTATTAAAGCACGGTAAGTAATCGTCCCTAAGGATGCC
TCGCTTAGTACCCAGAGCTTCCTTGGGAATTAATTTCTGTCTAAGTTCCT
CAGAATCAATTTGGTTTGACATATCCTTGACGATAGCATCTTGCACTACT
CGTGTTAAGAAATTTGAAGTAGTTGTATAAATGTACTTGACCGTTAAGTC
ACCCATTATAAAGCCTAAACAACGTAAAAAAAGATTCCACATATATTTTA
ACTGATCGTTTCCTTGAATAGATTTCGGTGTTTGGATACACAGAGGTGGA
AAAACTAATCCAGCCGATCGCTGAAAAACGAACAACTCCCGAACTTTACC
GACAATACTCGGTATAAGTTGAGCTGCCGAACATCCGGTACCAACAACAG
CTACTCGTTTTCCTGTTAAATCATAACCGAttggccagcgagatgtatgc
ATAGAATCACCGGCAAAATCATCAATACCCGGGATATCAGGATATTTTGG
TATGTTCAACGCACCAATGGCTGATACTAGATGTGAACACGTGATAGTTT
CCTTCTTAGAAGTAGAAACCATCCAAACCTGGTATTCATCATCAAAAACA
CATTCGGTCACTTTAGTATCAAGTTTAATATGTTCATGCAAACCATAATG
ATCAGCGAGTTTTTCTATATAAGCCAAAGTTTCTGCTTGACCTGGATTCG
GGCAAGACCATTCATGTTTAAAGAACGAAAAACTATACTGATATGCCGGA
ACATCACATGCGCACCCAGGGTATTTATTCCACCACCAGGTCCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048977-exon-scaffold_15-1491911889:59228..59502 | TCONS_00048977-exon-scaffold_15-1491911889:59228..59502 | Clytia hemisphaerica | exon |
| TCONS_00048977-exon-scaffold_15-1510915933:59228..59502 | TCONS_00048977-exon-scaffold_15-1510915933:59228..59502 | Clytia hemisphaerica | exon |
| TCONS_00048977-exon-scaffold_15-1575043694:59228..59502 | TCONS_00048977-exon-scaffold_15-1575043694:59228..59502 | Clytia hemisphaerica | exon |
| TCONS_00048977-exon-scaffold_15-1491911889:59749..60274 | TCONS_00048977-exon-scaffold_15-1491911889:59749..60274 | Clytia hemisphaerica | exon |
| TCONS_00048977-exon-scaffold_15-1510915933:59749..60274 | TCONS_00048977-exon-scaffold_15-1510915933:59749..60274 | Clytia hemisphaerica | exon |
| TCONS_00048977-exon-scaffold_15-1575043694:59749..60274 | TCONS_00048977-exon-scaffold_15-1575043694:59749..60274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:59228..60274 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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