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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048967 ID=TCONS_00048967|Name=TCONS_00048967|organism=Clytia hemisphaerica|type=transcript|length=2254bpRun BLAST on NCBI protein sequence of TCONS_00048967-protein >TCONS_00048967-protein ID=TCONS_00048967-protein|Name=TCONS_00048967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MYYHQNMIGWLCSVFVILASIFQNINGDTLKMSNILYRHGARSPTRFYPTRun BLAST on NCBI transcript from alignment at scaffold_15:22019..31790+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048967 ID=TCONS_00048967|Name=TCONS_00048967|organism=Clytia hemisphaerica|type=transcript|length=9772bp|location=Sequence derived from alignment at scaffold_15:22019..31790+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:22019..31790+ >TCONS_00048967 ID=TCONS_00048967|Name=TCONS_00048967|organism=Clytia hemisphaerica|type=CDS|length=18837bp|location=Sequence derived from alignment at scaffold_15:22019..31790+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048967 vs. Swiss-Prot (Human)
Match: PPAL (Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2 PE=1 SV=3) HSP 1 Score: 192.971 bits (489), Expect = 8.869e-54 Identity = 127/368 (34.51%), Postives = 199/368 (54.08%), Query Frame = 2
Query: 227 TLKMSNILYRHGARSPTRFYPTNPNQVTAWPDGAGRLSQVGMNMEYHLGKFLKERYVDTKFINQSYLHKEVSIRSSSVDRCLQSAQAQLAGLYPPSGWQIWGDEELGKLWQPIPVQTVPGDEDPLLRPEDTDCPRIGEIWSSMTKASTYIQKAKDNKELLDYMTKNSG-KNITLSNILFDVTDDLLCERAEGLKSAQWAIDSFPDILQLTYWAFNYXWAIDRFPDILELTYWAFNYLYQGSDEXXXXXXXXXXXKMVGNMKTMASGDTDDSLSKLNIFSGHDTSILSFTTALNT-KFPVPEFAACILVELYETPTGDHYVTINYRNGFGNITLTPMNLTGCDVYQCPLDDFVRITSKRIPTNRHKECN 1324
+L+ +LYRHG RSP + YP +P Q WP G G+L++ GM + LG+ L++RY F+N SY +EV +RS+ DR L SA+A LAGL+PP+G Q + WQPIPV TVP ED LL+ CPR ++ + + Y ++ N + LD + +G ++TL + ++V D L CE+ GL+ WA P +Q R + + ++ +YQ + E RL GG LL ++ N+ MA T L KL ++S HDT++++ AL+ +A+C + ELY+ +G+ V + +RN + P++L GC ++CPL DF+R+T +P + +EC
Sbjct: 32 SLRFVTLLYRHGDRSPVKTYPKDPYQEEEWPQGFGQLTKEGMLQHWELGQALRQRY--HGFLNTSYHRQEVYVRSTDFDRTLMSAEANLAGLFPPNGMQRFNP---NISWQPIPVHTVPITEDRLLKFPLGPCPRYEQLQNETRQTPEYQNESSRNAQFLDMVANETGLTDLTLETV-WNVYDTLFCEQTHGLRLPPWAS---PQTMQ-------------RLSRLKDFSFRFLFGIYQQA-EKARLQGGVLLAQIRKNLTLMA---TTSQLPKLLVYSAHDTTLVALQMALDVYNGEQAPYASCHIFELYQEDSGNFSVEMYFRNE-SDKAPWPLSLPGCP-HRCPLQDFLRLTEPVVPKDWQQECQ 371 The following BLAST results are available for this feature:
BLAST of TCONS_00048967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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