TCONS_00048887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048887
Unique NameTCONS_00048887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048887 ID=TCONS_00048887|Name=TCONS_00048887|organism=Clytia hemisphaerica|type=transcript|length=412bp
ctcaaaattaaaaaaaaaagaagaaatggaCTTTGCTTTATATACTCTTT
TATACATTTTATCAACAGGGACAAGAAATGTTGTGCAAGATGAAAGTGTC
AACCCATCCTACAGAGATAAGGACAAAACTGATCGAAATGGGGAATAATC
ATGACTCTACAGTTCTCAAATGGAAAACAGAGaaAGAAGAAGCAATCAAA
AAAGGTGAATGTGGAGAAAATCCTATCGTAGTTGGGGATAATTTGGATGG
AGAAGTCAACACAAAACATCAGACTGAAACTAGCACGAACAAATCATTCC
ACTATTTCAACATGTATGCAATTAAGGAGAACGTATGTCACTTATCTTCT
TTTATTAAGGTGGCCTGAAATCTTTCAGATGAGGTCTTGTTCCTAAATAA
CATGGATAACAA
Run BLAST on NCBI

transcript from alignment at scaffold_148:347708..348288+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048887 ID=TCONS_00048887|Name=TCONS_00048887|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at scaffold_148:347708..348288+ (Clytia hemisphaerica)
ctcaaaattaaaaaaaaaagaagaaatggaCTTTGCTTTATATACTCTTT
TATACATTTTATCAACAGGGACAAGAAATGTTGTGCAAGATGAAAGTGTC
AACCCATCCTACAGAGATAAGGACAAAACTGATCGAAATGGGGAATAATC
ATGACTCTACAGTTCTCAAATGGAAAACAGAGGTACATACAGTAAAAACG
ACACAAATTATCAAATCATTAATTGTTTTATTCAGAACAGGATTTTAGCG
GCAATGATTATGGATCTATAGATTTCTATGACATACTGAGTATATTGAGA
AATTATACATTATGTGACCAGTTACAATTATATTGaatatttattataca
gaaAGAAGAAGCAATCAAAAAAGGTGAATGTGGAGAAAATCCTATCGTAG
TTGGGGATAATTTGGATGGAGAAGTCAACACAAAACATCAGACTGAAACT
AGCACGAACAAATCATTCCACTATTTCAACATGTATGCAATTAAGGAGAA
CGTATGTCACTTATCTTCTTTTATTAAGGTGGCCTGAAATCTTTCAGATG
AGGTCTTGTTCCTAAATAACATGGATAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031070XLOC_031070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048887-exon-scaffold_148-1491911889:347708..347889TCONS_00048887-exon-scaffold_148-1491911889:347708..347889Clytia hemisphaericaexon
TCONS_00048887-exon-scaffold_148-1510915933:347708..347889TCONS_00048887-exon-scaffold_148-1510915933:347708..347889Clytia hemisphaericaexon
TCONS_00048887-exon-scaffold_148-1575043694:347708..347889TCONS_00048887-exon-scaffold_148-1575043694:347708..347889Clytia hemisphaericaexon
TCONS_00048887-exon-scaffold_148-1491911889:348059..348288TCONS_00048887-exon-scaffold_148-1491911889:348059..348288Clytia hemisphaericaexon
TCONS_00048887-exon-scaffold_148-1510915933:348059..348288TCONS_00048887-exon-scaffold_148-1510915933:348059..348288Clytia hemisphaericaexon
TCONS_00048887-exon-scaffold_148-1575043694:348059..348288TCONS_00048887-exon-scaffold_148-1575043694:348059..348288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:347708..348288 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174767	0.170426	0.395761	0.193595	2.12115	0.55872	1.79753	2.10353	0.441819	1.27695	1.4165	0.698364	1.62725	2.41417	1.48858	0.212996	0.393591	0.403418	0.371563	1.55525	1.01385	0.24726	0.601154	0.546536	0.938199	3.34928	2.39641	0.767253	0	0.197633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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