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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048880 ID=TCONS_00048880|Name=TCONS_00048880|organism=Clytia hemisphaerica|type=transcript|length=1062bp
cataaattagactacaaaatatgaaaaaactAAATGCATTAAATTAATCA
accgaaaatgaaagtgaaagaacTTTCCAGGTCTCCATTAGCATTTTCCC
TTTTCAGATCTAAAGTCCAATTATTCAATCAATGCTTCAATTCTAGCATG
CTACAACGGCTGTTAACATTTTTCGGCAAAAAAGCCCGTTTGCAAATTTT
CTTCGCcctttttcttagatagtgatctGTCTTCTTAATAAAATTCTAGC
ATTCAAAGTTACAGTTTAAGAACGTGGTCCGTTGAAATGTAAAATAGTAA
AAAGAGTTTTCGACTCCAACGAGGTATGAAAAAGgggttcattttttaaa
aaatgctgaaattttttttctcgaatattGAAATGGTCGGAATTATCTTT
TAGAATTGGAGCATTTATTTAAAATAACAAGCACAAAAGAAATGGTGCAC
TTAAAGCAAATAAACTTTAGTTCATGATTGATGAAGCTTATCAGTTTGGT
CTCACATAATTtaagttaaaaataaaaatttgaatatgaaaatgaaaatg
aaaatagaaatgaaaGAGAATTGGCAAAGAAAGAATGAGGAAGGTGTTTG
TTACTCAGAAGGTGCAGATGATGAAGATGGCCGTTTGACGACGAAAATCC
TTTGATTGCTCACCGTCACCAATAAAGCGAAGTTGTCGTACGTCACTGTA
AATGAAATTTCAGGACGATCACGATACAAATGAAATGagatcttccagaa
aaaatttgaatatggggggtggaggatataaaattttttggaaatttacc
aaccggacattgtgaattatgaacccccggacaagcatcagttgtcCCCT
TGGACATTTAAAAtcacccccaaacagagcaagtttgcccccaaaacaag
gcaaattttgcagatttttcactacctcccggacaaaaattttctggaag
agcccaatgtaaCATTTCTAAGATTTTCACCCTACTATTGGGGTTATAAA
GCTATGGATATATGCCAAATATAATCTCCTTCGTCACATAgcccttattc
ttttcttttaaa Run BLAST on NCBI transcript from alignment at scaffold_148:43218..45204+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048880 ID=TCONS_00048880|Name=TCONS_00048880|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at scaffold_148:43218..45204+ (Clytia hemisphaerica)
cataaattagactacaaaatatgaaaaaagctAAATGCATTAAATTAATC
AaccgaaaatgaaagtgaaagaacTTTCCAGGTCTCCATTANAACTTTTT
ATCCAAGTATCCCTGTACAAAGATAAGACCTTCATGAAGGTACACTAGCC
CTTAAAATTACCTAGAAATGCCTTAGACAATCCTggtattttgattgaaa
aagtaGTAAATTCAAGTTTGAAAGTCGAGCAACAGCAACTCTTTACCTTC
CAAATTTTACTTCCCTTTAAAGAATTATATGCGTTTTTCAATGACCATTG
CTGCAAGCTGAGATATTTTGATATCATTTCATTTGTCACGAACCAAAGGA
TTCTTTTATCTTGATTGGGTCCCGGGGGGGCAGtaggtttaccaactgac
ggtatgtacggcgaaaaaaaatggcttttagaatcgcacccttacagtgc
agaaaaaaatcagtgaaaatcataccctgacagtgcattttttcaaattt
tcaactcttttagagcaaaaaaatcaagacttttgagcaaaaattgcCTG
GATTCGCTGAAATTTCCAAccatacagtgcatttctgatattttgaaaaa
catacccttaaccgccgcacatacccgtcggtcaatttgcctgactgccc
ccccccatTGGGTTGAAACTTTGAAAAGGTTGAAAGGCTTTTTAGCGCTT
ATTGTTGCCTACAAcggaaaaataattaatttccCGGGGGTAAGAAAACG
TTTGATCCCGGCCGAAAGTAACATTTTAGAAATAGTAGGAGTAGTAACTC
AATTAGTGATGACCTATTTCTTAACTTCAGGTTACAGGCAAAACTGTAAA
GGATAAAAAAGTGCATAAAAATGGACTATTTTTTTAAGAGGTTTTTATTA
TCTGACATcgtaaaaaaatattctcataAATTAGActacaaaatatgaaa
aaagctAAATGCATTAAATTAATCAaccgaaaatgaaagtgaaagaacTT
TCCAGGTCTCCATTAGCATTTTCCCTTTTCAGATCTAAAGTCCAATTATT
CAATCAATGCTTCAATTCTAGCATGCTACAACGGCTGTTAACATTTTTCG
GCAAAAAAGCCCGTTTGCAAATTTTCTTCGCcctttttcttagatagtga
tctGTCTTCTTAATAAAATTCTAGCATTCAAAGTTACAGTTTAAGAACGT
GGTCCGTTGAAATGTAAAATAGTAAAAAGAGTTTTCGACTCCAACGAGGT
ATGAAAAAGgggttcattttttaaaaaatgctgaaattttttttctcgaa
tattGAAATGGTCGGAATTATCTTTTAGAATTGGAGCATTTATTTAAAAT
AACAAGCACAAAAGAAATGGTGCACTTAAAGCAAATAAACTTTAGTTCAT
GATTGATGAAGCTTATCAGTTTGGTCTCACATAATTtaagttaaaaataa
aaatttgaatatgaaaatgaaaatgaaaatagaaatgaaaGAGAATTGGC
AAAGAAAGAATGAGGAAGGTGTTTGTTACTCAGAAGGTGCAGATGATGAA
GATGGCCGTTTGACGACGAAAATCCTTTGATTGCTCACCGTCACCAATAA
AGCGAAGTTGTCGTACGTCACTGTAAATGAAATTTCAGGACGATCACGAT
ACAAATGAAATGagatcttccagaaaaaatttgaatatggggggtggagg
atataaaattttttggaaatttaccaaccggacattgtgaattatgaacc
cccggacaagcatcagttgtcCCCTTGGACATTTAAAAtcacccccaaac
agagcaagtttgcccccaaaacaaggcaaattttgcagatttttcactac
ctcccggacaaaaattttctggaagagcccaatgtaaCATTTCTAAGATT
TTCACCCTACTATTGGGGTTATAAAGCTATGGATATATGCCAAATATAAT
CTCCTTCGTCACATAgcccttattcttttcttttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048880-exon-scaffold_148-1491911889:43218..43246 | TCONS_00048880-exon-scaffold_148-1491911889:43218..43246 | Clytia hemisphaerica | exon |
| TCONS_00048880-exon-scaffold_148-1510915933:43218..43246 | TCONS_00048880-exon-scaffold_148-1510915933:43218..43246 | Clytia hemisphaerica | exon |
| TCONS_00048880-exon-scaffold_148-1575043694:43218..43246 | TCONS_00048880-exon-scaffold_148-1575043694:43218..43246 | Clytia hemisphaerica | exon |
| TCONS_00048880-exon-scaffold_148-1491911889:44172..45204 | TCONS_00048880-exon-scaffold_148-1491911889:44172..45204 | Clytia hemisphaerica | exon |
| TCONS_00048880-exon-scaffold_148-1510915933:44172..45204 | TCONS_00048880-exon-scaffold_148-1510915933:44172..45204 | Clytia hemisphaerica | exon |
| TCONS_00048880-exon-scaffold_148-1575043694:44172..45204 | TCONS_00048880-exon-scaffold_148-1575043694:44172..45204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:43218..45204 + |
Blast
The following BLAST results are available for this feature:
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