TCONS_00048868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048868
Unique NameTCONS_00048868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048868 ID=TCONS_00048868|Name=TCONS_00048868|organism=Clytia hemisphaerica|type=transcript|length=299bp
CTAATTTACAGTATTCGTTGGCTTCAGACACGGTACAAGGTGAATCCTTC
AAGGTTTGACGATTCCTCTCCATCACGATCGGTTCAGTTTTCTCAATATA
GTCTAGCTGGTCAAGAGTGATACTGCCATCACTGTTTTGCTGCATATTGG
CACCGACATACTTGAAGGATTTTGAAGCTGTGTGACTAACTTCAAAACGA
TTACAGATACTATCAATAATTTGTTTGAACTCAGGTGTACCCGCCCAAAG
AAAATCGTCTACATGGGCAAATATCACACCAGAAAGTTTATCATTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00048868-protein

>TCONS_00048868-protein ID=TCONS_00048868-protein|Name=TCONS_00048868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
SNDKLSGVIFAHVDDFLWAGTPEFKQIIDSICNRFEVSHTASKSFKYVGA
NMQQNSDGSITLDQLDYIEKTEPIVMERNRQTLKDSPCTVSEANEYCKL
Run BLAST on NCBI

transcript from alignment at scaffold_147:200831..201129

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048868 ID=TCONS_00048868|Name=TCONS_00048868|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_147:200831..201129 (Clytia hemisphaerica)
CTCAAATGATAAACTTTCTGGTGTGATATTTGCCCATGTAGACGATTTTC
TTTGGGCGGGTACACCTGAGTTCAAACAAATTATTGATAGTATCTGTAAT
CGTTTTGAAGTTAGTCACACAGCTTCAAAATCCTTCAAGTATGTCGGTGC
CAATATGCAGCAAAACAGTGATGGCAGTATCACTCTTGACCAGCTAGACT
ATATTGAGAAAACTGAACCGATCGTGATGGAGAGGAATCGTCAAACCTTG
AAGGATTCACCTTGTACCGTGTCTGAAGCCAACGAATACTGTAAATTAG

Coding sequence (CDS) from alignment at scaffold_147:200831..201129

>TCONS_00048868 ID=TCONS_00048868|Name=TCONS_00048868|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_147:200831..201129 (Clytia hemisphaerica)
TCAAATGATAAACTTTCTGGTGTGATATTTGCCCATGTAGACGATTTTCT
TTGGGCGGGTACACCTGAGTTCAAACAAATTATTGATAGTATCTGTAATC
GTTTTGAAGTTAGTCACACAGCTTCAAAATCCTTCAAGTATGTCGGTGCC
AATATGCAGCAAAACAGTGATGGCAGTATCACTCTTGACCAGCTAGACTA
TATTGAGAAAACTGAACCGATCGTGATGGAGAGGAATCGTCAAACCTTGA
AGGATTCACCTTGTACCGTGTCTGAAGCCAACGAATACTGTAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031055XLOC_031055Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048868-proteinTCONS_00048868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048868-exon-scaffold_147-1491911889:200831..201129TCONS_00048868-exon-scaffold_147-1491911889:200831..201129Clytia hemisphaericaexon
TCONS_00048868-exon-scaffold_147-1510915933:200831..201129TCONS_00048868-exon-scaffold_147-1510915933:200831..201129Clytia hemisphaericaexon
TCONS_00048868-exon-scaffold_147-1575043694:200831..201129TCONS_00048868-exon-scaffold_147-1575043694:200831..201129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:200831..201129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.787171	0.383808	2.67382	0.435987	2.65386	0.419423	0.506016	1.42118	0	0	0.398755	0.524251	0.523522	0	0.446982	0	0	0.90852	0	0	1.14162	0	0	1.23083	0.422575	1.13141	1.61905	1.72789	0	0.44508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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