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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048867 ID=TCONS_00048867|Name=TCONS_00048867|organism=Clytia hemisphaerica|type=transcript|length=871bp
GGTCTGGTTTCGTTTTGGCAACATAATTTGGTCAATGATAACTGGAGCAG
TTTTGTGTCCGTCAGCATCTTGAACCACGTCCTCAGTTGGCTTTTCGGCA
GTATTTTCAATACTTTCATCAGGGATTGGAGCTTCGGGATCAGTTTGGGT
ctcaatgttttttatttcaattttttcatgtttCTCAGAAGTATTTGGTT
CTGTTGTATACTGCAGTCTACATGGATGTACTCAACGAACAACACTTCCG
TGTCTTAGCATAACAACCTTTCCGTCTACTCCAATTACTGTGGCGGGTCC
TTGCCATCTACAGTCATCGGGcaatttataaaaaacatgatcACCATATT
GATACACACGATCACAATATTCAGGAGAAAGTTTTGGTACATAAATTTCC
TAGTTCTCCCACTTTTCCCATCAAAAAGTCAAAGTTTCACGAATGGGATG
TTGTAATGCTTTCCTGAGTTTCGAGCTTGTCTGGGCATGAATGAAAGCTT
TCCGAGCAGAAGCAATAGCATTTAGATGGGTAGCAATGGTTGGACTAGTT
GTGACTCCTTCCAGAGCAGGCAAATCGTCATGGAGTGCTGATGGTAATCT
TGGGTTTTGTCCAATGGCGAGCTGTGCTGGGGTAAAACCATGTACAAACA
TGCACGTGTTACGGATGGATGTGGCATATTGCAGGGCAAGAGATTCCGAG
AGCTTTGGATTGTCCTCTAGCATTTTCTCCATCATAATGTCTATGGTGCA
ATGATTTCTCTCGTTAAGACCGTTAGCCCACGGGCTGTATGCTGCGGTAT
GTTTGATCGATATGCCAAATTGATTTCCAAGTTCTCTCATTTCATCATTT
GCAAATTCTCCCCCGTTATCC Run BLAST on NCBI protein sequence of TCONS_00048867-protein >TCONS_00048867-protein ID=TCONS_00048867-protein|Name=TCONS_00048867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
DNGGEFANDEMRELGNQFGISIKHTAAYSPWANGLNERNHCTIDIMMEKM
LEDNPKLSESLALQYATSIRNTCMFVHGFTPAQLAIGQNPRLPSALHDDL
PALEGVTTSPTIATHLNAIASARKAFIHAQTSSKLRKALQHPIRETLTF Run BLAST on NCBI transcript from alignment at scaffold_147:199104..199974 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048867 ID=TCONS_00048867|Name=TCONS_00048867|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at scaffold_147:199104..199974 (Clytia hemisphaerica)
GGATAACGGGGGAGAATTTGCAAATGATGAAATGAGAGAACTTGGAAATC
AATTTGGCATATCGATCAAACATACCGCAGCATACAGCCCGTGGGCTAAC
GGTCTTAACGAGAGAAATCATTGCACCATAGACATTATGATGGAGAAAAT
GCTAGAGGACAATCCAAAGCTCTCGGAATCTCTTGCCCTGCAATATGCCA
CATCCATCCGTAACACGTGCATGTTTGTACATGGTTTTACCCCAGCACAG
CTCGCCATTGGACAAAACCCAAGATTACCATCAGCACTCCATGACGATTT
GCCTGCTCTGGAAGGAGTCACAACTAGTCCAACCATTGCTACCCATCTAA
ATGCTATTGCTTCTGCTCGGAAAGCTTTCATTCATGCCCAGACAAGCTCG
AAACTCAGGAAAGCATTACAACATCCCATTCGTGAAACTTTGACTTTTTG
ATGGGAAAAGTGGGAGAACTAGGAAATTTATGTACCAAAACTTTCTCCTG
AATATTGTGATCGTGTGTATCAATATGGTgatcatgttttttataaattg
CCCGATGACTGTAGATGGCAAGGACCCGCCACAGTAATTGGAGTAGACGG
AAAGGTTGTTATGCTAAGACACGGAAGTGTTGTTCGTTGAGTACATCCAT
GTAGACTGCAGTATACAACAGAACCAAATACTTCTGAGaaacatgaaaaa
attgaaataaaaaacattgagACCCAAACTGATCCCGAAGCTCCAATCCC
TGATGAAAGTATTGAAAATACTGCCGAAAAGCCAACTGAGGACGTGGTTC
AAGATGCTGACGGACACAAAACTGCTCCAGTTATCATTGACCAAATTATG
TTGCCAAAACGAAACCAGACC Coding sequence (CDS) from alignment at scaffold_147:199104..199974 >TCONS_00048867 ID=TCONS_00048867|Name=TCONS_00048867|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_147:199104..199974 (Clytia hemisphaerica)
GATAACGGGGGAGAATTTGCAAATGATGAAATGAGAGAACTTGGAAATCA
ATTTGGCATATCGATCAAACATACCGCAGCATACAGCCCGTGGGCTAACG
GTCTTAACGAGAGAAATCATTGCACCATAGACATTATGATGGAGAAAATG
CTAGAGGACAATCCAAAGCTCTCGGAATCTCTTGCCCTGCAATATGCCAC
ATCCATCCGTAACACGTGCATGTTTGTACATGGTTTTACCCCAGCACAGC
TCGCCATTGGACAAAACCCAAGATTACCATCAGCACTCCATGACGATTTG
CCTGCTCTGGAAGGAGTCACAACTAGTCCAACCATTGCTACCCATCTAAA
TGCTATTGCTTCTGCTCGGAAAGCTTTCATTCATGCCCAGACAAGCTCGA
AACTCAGGAAAGCATTACAACATCCCATTCGTGAAACTTTGACTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048867-exon-scaffold_147-1491911889:199104..199974 | TCONS_00048867-exon-scaffold_147-1491911889:199104..199974 | Clytia hemisphaerica | exon |
| TCONS_00048867-exon-scaffold_147-1510915933:199104..199974 | TCONS_00048867-exon-scaffold_147-1510915933:199104..199974 | Clytia hemisphaerica | exon |
| TCONS_00048867-exon-scaffold_147-1575043694:199104..199974 | TCONS_00048867-exon-scaffold_147-1575043694:199104..199974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:199104..199974 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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