TCONS_00048837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048837
Unique NameTCONS_00048837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048837 ID=TCONS_00048837|Name=TCONS_00048837|organism=Clytia hemisphaerica|type=transcript|length=1192bp
CAAACCTGGGAACGTGACCTAGAATGATATCAATACATTTCGAAATGTTA
ATTTAACATTGCAACATTTATGGGCTGACCCACATACCAGAAGAGCGAGA
TGGGTGCTATAAAAGAAGCCAGAGAGATGTACTGTCAAATCGTAGAAGAT
AACAACACTAAACGAAAGAAGAAATTGTAGCATACCAAAAAGGAAAACTA
CCTAAACCACTGACAAAATGGctacaaaatattacaaaaacatGTCCGAA
AAAGATTTTCTCGATGTTTTCCGTAAAGAATATAAAGTTGATGCCGTCAC
TTTTATGAAGGCTTTTGAAGAGGCAGATGAGGATGGCAATGGACAAATTT
CTTCTTCAGAACTCATTaaatttttaaaagcatTGGGTGTGGACGCCAAA
GAAACTGAAGAACTCAAAGAACACATTATTGAACTATACGACAAAAATCA
TGATGGAAAACTTGGGCTAACAGAACTCTCAAAATTATTACAATCTGATC
AAAATGTATTGAAAGCCTTCGTCGAGgGTGAAGACTTAACAGAAGAAAAA
TTCAATGAAGTTTTTGCTCACTACGATCGCGATAACGGTGGTACGATCAA
TAACAGTGAATTGAGTGGTTTCTTAAAAGATATGAAGTCAACACAAGATG
TTAATGTGGAATCGAAAGAACTGAAAGAATACGAGATTTGGATCCTCGGT
GAAGCAGATAAAAATAATGATGGTGAACTTTCAAAAGATGAACTTCGAAT
GTTATTCTTCGGTTAAAAACAAGACTCCACGATAAAAAAATATCGTATTT
GTATACTGAGAATTAGCTTTTTATAGAGTAAATTTATAATGTGTTAttaa
tttttgtacattttcatATTATTTCAAACTAAATTTTTGACTCTGATACT
TCTGTCAAATATGCTACATTAATTACCAACTAGTATAATCAACATGGTAC
ATTATAATATTTCGTTCTTATTTctttctttgaagaaaattacTCTTGAT
TTTAAGATGTTATACAACTCAGAGAAATTTAAGGACTCGTTATCTTCATT
GAACTACAAAGAAGccattgattttttctgcaaatattatataattgttt
ttttgtaaacttctactatattatatattatatctATATTCTTATAATAT
TTTGATGATTACATCGAGACATCAATAATGCAATAAACATTC
Run BLAST on NCBI

transcript from alignment at scaffold_147:240117..253861+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048837 ID=TCONS_00048837|Name=TCONS_00048837|organism=Clytia hemisphaerica|type=transcript|length=13745bp|location=Sequence derived from alignment at scaffold_147:240117..253861+ (Clytia hemisphaerica)
CAAACCTGGGAACGTGACCTAGAATGATATCAATGTAAGAAGTGCGTTTC
TgaaaaaggctttaaaaatccACGTTGCCTATCTATTCcagtttttagat
attttattaATCATGAATCCTAATAATTTTAACCTTTCGTaggtttgcga
ccgcagtcgagggcgacccgaaggctcccttttctttAGCTGTCTATCCA
AAGGTAGAGGAGGTTACCATTTCTTTTCCTTGACttttccacttaccctt
gatccgtctcttcaGTTTCAGAGCTTCAATTAgcgaggcatcaagtacca
ttttgggagaATTTGGTATGACCCTACTGACGGTCGAATCCACAACCTTG
TGCACCATAGCTGAGTATGCTACGTAATCACGGTTTCTCGGACGGTAACG
CTACACTGTAAtcacctccgccactgctttCTCCGCCTCGGGCTAACcaa
cgttttcaaatttatcccgcctcctaaattattatttttttagtgatctt
gtgtagacgatccTCGTGTATGTAAGACACACCAAAAAAGAATAGTTGTT
TTTATGTGCTAAGGAAGGGTCTATAGCACTATAGCCTTcaattatttaga
ttttttcaaagccgGCACAATTTTAGATCAGGataatttttgtagatttt
tataaatttttctgTCTAAAGCTTCCCCATAAGTAGAGATATATTTTAAT
ATAATGATGTTGCATGGGGTGCAAATTAATCAAAAGAGTTGTAAGCTAGC
CCGGTCTGTTAATTTCTCCTTTTAGAAAACTCACAGTTGAACTGCTTTCT
TGTTTCTTAGACATTTCGAAATATTAATTTAACATTGCAACATTTATGGG
CTGACCNTTCTTAGACATTTCGAAATGTTAATTTAACATTGCAACATTTA
TGGGCTGACCCACATACCAGAAGAGCGAGATGGGTGCTATAAAAGAAGCC
AGAGAGATGTACTGTCAAATCGTAGAAGATAACAACACTAAACGAAAGAA
GAAATTGTAGCATACCAAAAAGGAAAACTACCTAAACCACTGACAAAATG
GTAAGAAAATTGATAAACATTTCAAATAGATTTCTGCAGCTTTCAGGCAT
CAAAAGACATCGGTTGCGTGTGTACCAGGGTCGAATGACGTCAAGTTCTT
CAATGTAACGATTCAATACACGTGACACCATGTGGCCCTACTTATCTCGA
TACAATCCTCTAACTTCCAACTAGTTGTAATAGAGGTGCCTTCTTTTAAA
TTCATtggaattttaataaatttctatAGGTTCTTTCAACTATTGGTGAG
TCCTATCCTAGTAACTCAGTAGCCAGTAGCTTCTTTATTATATCGTATTC
CTAAAATGGAAATTAGAACTTCCGAAAGAAGGAATCGCgcaagaaatttt
aaaagagaTACAATGTTAGGCTTCAAACTGGGTTTAATTTATTAACagtc
agattttgaaaaaaatgtaatacTAAGGTTAGCTTCCTTTGTCTAATGCT
CTTTAAATTATTTATCATCCTGTGTGATTCCTTTACCGGTCAAACCGGGG
GCTATTCCGGGACACTTTGATTCAAGGATTAGATTATCAgaattataatt
ttaaaaagtcttTCCCGAGAACTTCCATACAAAGTTTTAAATTTATACAG
AAAGGTTCGTCGGTCTACTTTATTTAATGTTGACTTGATGTAGAGCAATA
TAGGTAGAATTGTTGTAGAGACTTAATtggactaattttcgcgagaattA
ATTTGGCATTTATATTAAAGTTTTCTTTAGTGTAATNAGAGACTTAATTG
GACTAATTTTCACGAGAATTAATTTGGCATTTTCATTAAAGTTTTCTTCA
GTGTAATTTCGTCGAAAACCGAGTATTTGCATAAAATTTGGCAAGACGAA
AAGTCGATCAGATATATTAGCGATCTGCCTTGGATTTAGGCTCCTTTAAT
ATAGGACTTTAAAACATTAGAACTTTGAAATATAGATACAGTCACTCTTT
GATTAACTTAATCGATTTTAGAACAATTAGGTTAATCTATATGAGGGGCT
GACTATCAGAAAAATAATCCATTTTTGGTTAATTATTTTTGGTTTCTTGT
TAACCAACGTAATTAAAATTCCGAaattgtaattttctttttggtttgAC
CTGGACTGCCCAGTGAACACGATCTTTTTCTCAAGCTAAATGACGCACAT
TCCTTTAATTCATGTCTTAGTTAGACGGACGATGTTTTATCGTTTTGAGC
CATCCGGGTAGCTTAGGGGGTGAACGGGTGTTGgaaacaccgaaataccg
acgttTTTCTTGGATCACCGTCCCACCGACAaccaaaaattgctaaaatt
ctTTCTTTGTTGTAACACGGCACGTTTGACAACGTAATATCGTGTCCTTT
TATTTTGAACACCGAAACATCGACGGACTAATACCGTCACATCGCCAAAC
CCGTATGTATTCTCCCCCTTTTTAGAACATATATTTCGTGTAATACACTT
TTATTATATCAgaagaattttaaaagaaaaattaggctcaaaattgccaa
aaaataagaacaattaaagaacaatgctgagcctaaaattactcaaattc
aagcaatttaggggttaaagtagtaaaaatttgaatataacgCCTAAAAT
TCCTCAATTGCATCttagaaataagaacaggataagaataatttgaggct
caaagtcccaaaaaataaatttctggttcttataaaaaaaagtgtattcg
attcattaaaataaatcatTGTTCATCAGTCTTCAAAGTGATCTGTCAAC
AACTTATGACTTTCGATGACACACTGTTATAAGATATGACAATAGCAATA
CCCATTTTACAGACAGTCCCGAAATTATTTCATCATGTTTAATTTACTTA
GTTACTACAGTATTTGGTGACAAACGTCTGTATTCAAATGTATTGTATAA
ATTtgtgtttgcttgtttttcagATTTGCTAAGATATCGTATCCCATATC
TACTTTAGACCCAAAGAAAGGATTTTTTGTCATATACGTTTTTTCTAttc
gtacacgttttttacataagaacataaagtATAATAAAAACATAGGGCTT
CGAGACtagaaaatcttaagaacattctaagaacatttcaaggcttaaaa
cccagaacattaaggaaacccgaaggcttcaaaaatatctttaacattct
tataaaaaacgtgtacaaaaataataacatcaatATGCTAACGAATTTGG
TGTCCTGATTACATATCTAGTTAGTTGGTTATGAAAGGGAAACGCCATCT
TTGTATCCAATTAGAGATCATGTTTGATGGTGTACAAATTGTCGTGGATT
GTTTCGATTGTTTTGCTCTGTCATATATGGGTACTAATAGGACATTCTCT
TTCATGATTAATTTGCGTTTATTGAAGTAGTCCTTGTATCAGGATTGAGT
ATATTATCCAAGGAATGTAAACAGAAAAGCTGTCCTTATCAGCAGAGGAC
CCACCCAGTCTCATAATATTATAAAGTTTATGTGAGGTAGGTCATCCTCA
CATTGGTAAAACGAAAATCACATTTGTATGGCTTTGGATGAGGAGGATAA
TTTCTTAAGTGATGATACAGGGTGTTCAATATTGCTCTAAACGTCGTAAT
CGATTGAATTAGAATCTGGTATATTGTCTACTCGTGCCTGAAATGTTTAG
GGCATTTTGTTTTGGAGATGGGGAGAAGCATAGAGATACTAGGTGGTGGT
ACTCGATCTAGCATCGTTAGGAAAAGCTTAAAACAAGCTTATACAGTCGA
CGCTCTCTAAtccgatcttcaaggggaattgggttttcattgaataaggt
cgaattagagagtgtcaactgtacaTTCAACATAAAGGATTGGGTCGGTT
TCAAAGCGAGAGCAAGTACAACTTCAGTCGAGGTTGCTTAAATTGAAACA
AGGCATTTGCTACGATAGTAGATTCTAAAAACAACGATAGACTCTTGGGA
AAAATCCCATCTAAGATTTCTTGATTTTNTCTAAACGTCGTAATCGATTG
AATTAGAATCTGGTATATTGTCTACTCGTGCCTGAAATGTTTAGGGCATT
TTGTTTTGGAGATGGGGAGAAGCATAGAGATACTAGGTGGTGGTACTCGA
TCTAGCATCGTTAGGAAAAGCTTAAAACAAGCTTATACAGTCGACGCTCT
CTAAtccgatcttcaaggggaattgggttttcattgaataaggtcgaatt
agagagtgtcaactgtacaTTCAACATAAAGGATTGGGTCGGTTTCAAAG
CGAGAGCAAGTACAACTTCAGTCGAGGTTGCTTAAATTGAAACAAGGCAT
TTGCTACGATAGTAGATTCTAAAAACAACGATAGACTCTTGGGAAAAATC
CCATCTAAGATTTCTTGATTTTCCGTGTTGGCAGATTTACTATGCTATTT
GCTATATGACTGTCAAAAATATATTCTTGTACGAAAAAACTGTTGATTAC
ATATTAATCCTCGTGATTATCAAATCTTTTCCTTGTTCAAAAAGTTCGAA
TCTTATTTCAATTTCATCCTTGGTTTTTTACTCTACTATAAGGTAACTAA
ATTTGTAGGATACAATTTTAAGGATATAATTGTCGTGTTATATAATTATT
GTAAACTATAGTTTTAAACCAGTCTTACCTATTTCTCCCTTTTAAATCGA
GTGGTCAAGAGTTTTGGCCTTACGTTTGGGACTATAATGGTTGATTTTGA
TGTATACACACGTCGAAAAAGATTATGGATCGATGTATATTTGGTCACAT
TTTTGGACCGTGACTTATATTTATATTTGGGCTAAGTATTTATGTTTtgg
gaacaaaaattttttaaataatattttgacaaaCTTGTTTTGTGTTTCCT
TTCGCCATTAAAAGTGTCGTGACATTTGTTCATAAAACAGCTTTGTGCTT
GGGTTTGCCTATGTGatatttttaatcgaaaatCAGTCACGCATACTAAC
TTCAACAGCTAGTGTTTGGAAAATAGACTCAATGAAAGTTAAACCTAGTT
ACTCTTAACATAGGGTATGTAAGTCAAGGTCCGATGTTTCTCTTTGGAAA
TTTCTGGTATGATGCCTGGACGCCTTTCATATATTAAGTCACCTTAGTCA
AATATAACGGCTAAAATTATTAAAGCCCTTTTTGTGTTTTGTGTGGTTAT
GGTATCACGTTTTTGTTAAGGTTTTGCCGTGCTGTTCGTGTTTGCATTCC
ggtagaaaaaaaagtttgtttttctctATGATCTAtgggttttctttttt
ttgtttgttaataTAGAATATTTCAATCATCTAAAACTAAAAATACCCAT
GTGAAGCTCTTGGATGTTTTCCGTAAAAGCTATATAAAGTGACGCcgtcc
aaatttgaaatagcACTTTTTTCTATAGACTAACCCCTTGATATTTTTAG
TAGCAGCCACCAAGTCGATACCTTCACAATTTGGCATAGCACTTTATTCT
ACAAGTTAATCTGAAAACAAGACAGGCTTTTCTCGCAAAACCAACATTTT
ACGCCAAAGCATATCTTCTTTGTTTCCAAAGAAGCCTGTAGAAAAGTACC
GTAACGTGGACGAAGGCTCAAGAAACTCTGTTCATCGTTTCAAGATTCGT
TAATATAAGGGAAATTTTAAACTCGAAATCCGAATCTAAATGGTTACGAG
TGAATGATATTTGATCAATAAGAAGAGAACTGAATTTAGTTGTATATCTA
ATACTTGATGTGTTTCTTTGTAGGctacaaaatattacaaaaacatGTCC
GAAAAAGATTTTCTCGATGTTTTCCGTAAAGAATATAAAGTTGATGCCGT
CACTTTTATGAAGGTTAGTTGTTTGACTCGCTACAttctacacccccttc
tcacagacccactggatcttcttgtggaaaattatactccaatttttgtc
cccgctgaaaataatcagtcaaggaaatcctcactgcaaaatagtGTGCT
ATTTTTTCGATCCACCCTGAATTTTCTTGCTGGAAAtcataaaagaattg
aaatcccaagaattgaaaaatatttggttGGTATGCCGGTATTTCATGAA
AAGATTACCGGTATTCCAGTACTTTTTATCCACGGAAGCCCCTCACTATA
TATTTGAGGGTACTTTTAGGCAACTCTgactttcaaatgaaaaaatgagT
CACTAgcagaattaaaaaattaattcatcTCTTCATCCGACTCTTTTCCG
GGAAATAACGCTTTAACAATTCTCGTCATTAGTCCCGGGAATTTAACCTA
GATTCCCTTCATTATTTCTTGgctattttttatgaataaccGAACTGGAC
TCGTGTAAAACTGGAAGGAATTAGCTACAGTTTCATCGAATGTGTTACAA
TCGTTTAGCTTTAAATTCCATGACATTTGTGTATAAGagcacccctgtct
cgcagccccgaTCGAATTTTTCCAACAGCTTGAGATAAAAGTTTTATCGA
ATTTCCAACGGTGATAGAAGCTCTTTTGTTCCAAGCTCAAAAAATCAGAA
TGGTTTTGGACCGCaattttttctattgaattttaaatggggATCAAGGG
ATTCAATCAAAGTCCTTTTCccaatggggctgaaattgaagggtattttt
cccaccggggaccaaatttttgaccaaatttttgaccaaattttccaaTG
GTCAGGTTGGAGGTGACACGGTGGTGTATATGatagattttttttgattt
tttttttatttcttactATAATTTTTTACTTTCCAGGCTTTTGAAGAGGC
AGATGAGGATGGCAATGGACAAATTTCTTCTTCAGAACTCATTGTAAGTT
TGCTGTtttaaaacttcatcatcattATTGACAGGGAGTCTTTGATAACT
GACGGAAAAACGCTGGAGATTTTAGGAACTTAAACTCTCATATGATTATT
TGCAACGAGATCTTTAAGCCTGATTTTTGGACCTCAAATGTGTTAAAATA
TgtcaaacgtttttttttaattcaatgaTTTTGAAATCCTGTCAGAGATt
aaaaatggttgttttttgTACCTGGATTGGTTAAATATTCTTATCCACTT
TCTTTACAActagaaatttttaaaagcatTGGGTGTGGACGCCAAAGAAA
CTGAAGAACTCAAAGAACACATTGTAAGTAGTGATGCCGGTCACGGTTTT
CTTGATCTAGGTCCCGTAAAAGTATCAATATGAACAACACCTGATTTGTA
ACTGTTCAAATTAAGAATGAGctgtacatgtttttcttttatgagAACGT
TCAAAGAATTTTTAATCTTCGgattttcttagtttttttagttttgcgag
atgctcttaaaatgttctcatttttttcaccattttgtgagttaTCTTGT
GTAATTTCTTATCAACTTTCATGTTTTAAAGTCCACAAATCTTCAAAATG
TCCTAACTTGCCGATAACTTCGTAGccttatgtttttttatattaagAAT
TTCTTCAAATATAACAGACGTCTAAAATCGTTTGGTTGAGCTAGGatcta
aaacatttttctgtGTTCCTAACTGCATCATCCGTTATAACTTACTAGAA
AATGTTATAATAGTGTACAAGCTTCGCTATATTAATTCTAGATTGAACTA
TACGACAAAAATCATGATGGAAAACTTGGGCTAACAGAACTCTCAAAGTA
AGTTGTTTAGAATCTTACCACAAAAGTACCACAAGTTTGACAGCAAAAAC
TCTGAGGCATTAGGTATGATCATTTATTTACAAGAAGAACCGTATTTAAA
GATGTCTTATTTTGAAGGTATCTTTTTCTTGTGTTTCATGTGTTTAATCA
TATCCTTTGCATCGtattctgaaaatgaataatCAGTAACTTAATTTCGC
TTTTCGATTTTAGATTATTACAATCTGATCAAAATGTATTGAAAGCCTTC
GTCGAGGTAAGTTTGCTTGTTCTTTTTGCACTATGCTAGATATCCTATCC
NTTTCTTTTATGAGAACGTTCAAAGAATTTTTAATCTTCGgattttctta
gtttttttagttttgcgagatgctcttaaaatgttctcatttttttcacc
attttgtgagttaTCTTGTGTAATTTCTTATCAACTTTCATGTTTTAAAG
TCCACAAATCTTCAAAATGTCCTAACTTGCCGATAACTTCGTAGccttat
gtttttttatattaagAATTTCTTCAAATATAACAGACGTCTAAAATCGT
TTGGTTGAGCTAGGatctaaaacatttttctgtGTTCCTAACTGCATCAT
CCGTTATAACTTACTAGAAAATGTTATAATAGTGTACAAGCTTCGCTATA
TTAATTCTAGATTGAACTATACGACAAAAATCATGATGGAAAACTTGGGC
TAACAGAACTCTCAAAGTAAGTTGTTTAGAATCTTACCACAAAAGTACCA
CAAGTTTGACAGCAAAAACTCTGAGGCATTAGGTATGATCATTTATTTAC
AAGAAGAACCGTATTTAAAGATGTCTTATTTTGAAGGTATCTTTTTCTTG
TGTTTCATGTGTTTAATCATATCCTTTGCATCGtattctgaaaatgaata
atCAGTAACTTAATTTCGCTTTTCGATTTTAGATTATTACAATCTGATCA
AAATGTATTGAAAGCCTTCGTCGAGGTAAGTTTGCTTGTTCTTTTTGCAC
TATGCTAGATATCCTATCCAGAACCTCCCTTCCCAATTCGAGATTTTCGA
GAGAAAAGAAGTTTGGGAAGGTTTTAGCCAATCAAACGGCGACTGAAAGC
TTATCGACTTTGGCTTATCATTAAACTGTTAGTTTGTTAGATATTTTCCA
GGGAAGTGATATTCTGTGTCAATGACgagttatcttttttttttcaattc
caggGTGAAGACTTAACAGAAGAAAAATTCAATGAAGTTTTTGCTCACTA
CGATCGCGTAAGTTCGACAGACTCTAAGATCGCAGAACTTTTTGCCATTT
CCCTAATCATTGACTATAAAAGTTTTGTTCGTAAAAAATTATGTGCTGTA
TTCTTAGTGTGTGTTACATGCAAACCTGATTAAAATTACTTTAACCGGGC
AAATCTTCACGAGATTTAATCTTGAGAGCAAAAAATTTGCGAATTTaatt
tggatttattttttgcaggaatttaatttcgcaaatcagCCAAGAAAACT
AGCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNgtcggatttttcataccaattttgaaaaacaggcggcaacgaag
ctcgcttcaaagagacaataaaagatagatgtccagtcgtttatatgttc
atggctTAATACACCAGATTTTGTAAGATCAGCAAATTAACAGGGATACG
AATTTTTAGCCGGaaataagaatttgaatatttcacgtagatttattttt
gcgaGATATTCTTTTCTCGAAAAAGGCCTAAATTTGCGAAAACAcaaaat
taaatccaaaatACATATTAATCCGAATAAAATAGAAGATGTCACTGTTC
TTTCATCAATTGATAGAATTATTCAAAGTTGAATTTAGCTTATATTTTGC
TTCAGGATAACGGTGGTACGATCAATAACAGTGAATTGAGTGGTTTCTTA
AAAGATATGAAGTCAACACAAGATGTTGTAagtaaaactttcaaatttaa
atCATACTATGGGGTGTACGGGTTTAACCGTGTGGCGGTATTTACCCCTT
TTTTCGATCGAGAGAAAAAGTGACGGTGTTTCGGTATTAAACATGCGGTG
ACAAAATaacgaatttttcgaaaaaaattactGTTGGCGTTGACGATGGT
CCAACAAAAATGCGTACGACCATTATATTCATGGTATTATCCGCGTAATG
TTTTTTACGGAAATAgtccggtttttgccagtagtgatAAAATTTCAACA
GTTTTTCTCTAGTatatatttcttaaatttgccactactggcaaagcCGG
GGTGTttctgtagaaaacattacgtttTACGTTATGAATATTACGAATCT
ATGTTTTCTCGACATTTTGTCCTTATAATTAATTTGAAAAGCCTACACCT
AAACCTGCTGGTGTTACCCCTTCAATGAATAAAATACTGTTTGTGACAGT
TTTCTACTAAAAAATGGGATACTCTCATTGATCCaaagatattcttgttt
tatGATGTTTATGATTTGAAAAGGAGGCGCGCTTCTATACTGGCAAGAGG
AATAAAcgaaagaatttctcaaaatttgtgatCTTGTGGTGCTGGAGACT
GTGACCAAGTGTCTTTCTTTTGTATCGAAAGGCTGTGTAATCGATATCTA
GGATATACTTTAAATTATGTACTTTAAGGcacaatacacaggttgcaaaa
ttcaAGACTGTAGACAagtcacgcttttactcgaatttttatgtgcttgt
tacatgacatcatagtataagaaagccgctgCTGGAATATGTACCAACCA
CATTGTCttctcagttaattgctgttctatctctgtctccgagctttata
agaacatcaagatgctcagtttattattggtagatagcttttgaaatttt
tctcttaatttccttcacaaaaagtttttttattgctagatatctttgaa
tctgtacccaatagaacacttgaactaatttggaCATATAGACCAGCGTC
CGTGTTCGATAATTCTTTCACttcatattttaggggtattttgtggaaaa
aatagtttttcgccaaaattgagattataagaactatattcaagatgaca
actttcttgtcagtttgaatgataagttttgaaggtgctggcttgaaact
ttcacagtattatctagatgtactttttcattgatttctaaacagatttc
actgaaatattgcgaaggcattcgaggcactttgtttatttttgatttct
ttcagcgcagccattttgtgcttgtttaaatttcttattgttgatctttc
ctttacaatgattttataatgcaagtgtattatcaagggtatatcattaa
tgtctaaaacactgagaagtaagtattaacgacaaaccaataaaatttac
cattaaagatgctacattactgatctcTTGATCtaaaaatagtcatcaaa
tacgacagagatagaacaacagaagttcactcaagtgagttacggcatgt
ccaaagaaaaagtgaaccagttccactcattttcaaaatgtcaaacatag
ctggaaagaagcgccttGTGATGTATATCAACGTGAtaggtgttagaaaa
atttaacttaaggctataagaagttatagcccaaaaacctgtattatgac
gtcataaacattacataacattacgtcataaaactaaaaatttgaatatc
tcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCGTGAACTAAAAGTCATATAaacgtca
aattttgaccacaaatagatattgatgtaagaaaatttctgagttaaaaa
tcttttgaaaaaaatgatgacgtcatttattatagccaaaaatcgaaaat
tgcttaaaaatgctgacttcatcatttttcaggagatttcgaaaatttta
ctTCTAGAGAATTACAATATATTTGTTCTGTCAAAATTACATATTGATAT
CATTAATAGTTTATgagttatttaaattttaaatttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTACATCATATGGCGCTTCTTTtcagctatgttt
gacattttgaaagtgagtggaactggttcacttttaccttggacatgccg
taactcacttgagcagatgttatcattccagccgcggctttcttatacag
ggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaaag
tttgtgtgtgttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNtgtgtgtgttatcgctaaaatataagaacgt
tctccatcacacaggcttattacaaaaggtagttacaacgtataaattaa
tcgtaatgacaaagaaaaacgagggagagcttaaaatacaattttgtgaa
tacacacataaaactttctactcatagttgtgtttcgactggatacttta
attagggacaccctgtactatGATGACATTTACTTCTGACTGGTTAGata
atttattgacactaataaatttatcagctgtaagttgtaaagcaagtaac
atgggaataaaatcacgtgaactttttcgagtaatcatatgttttgactg
cattgatataaNctgtaagttgtaaagcaagtaacatgggaataaaatca
cgtgaactttttcgagtaatcataTGTTTTGACtacattgatataatttt
tgcAGCCCGTTTATTTTGGCGCGCTGTTAAGGGTTGATGTGCGTGTGTTT
CCAGGACTTTGAATTAGATATCTGTGTACTCTCCATGAGGTGAGTACCAA
TTTGTCAACGAGACCTAGTTACATTTGATCCACTAATTTCCAACAATTTA
TTTAGAATGTGGAATCGAAAGAACTGAAAGAATACGAGATTTGGATCCTC
GGTGAAGCAGATAAAAATAATGATGGTGAACTTTCAAAAGATGAACTTCG
AATGTTATTCTTCGGTTAAAAACAAGACTCCACGATAAAAAAATATCGTA
TTTGTATACTGAGAATTAGCTTTTTATAGAGTAAATTTATAATGTGTTAt
taatttttgtacattttcatATTATTTCAAACTAAATTTTTGACTCTGAT
ACTTCTGTCAAATATGCTACATTAATTACCAACTAGTATAATCAACATGG
TACATTATAATATTTCGTTCTTATTTctttctttgaagaaaattacTCTT
GATTTTAAGATGTTATACAACTCAGAGAAATTTAAGGACTCGTTATCTTC
ATTGAACTACAAAGAAGccattgattttttctgcaaatattatataattg
tttttttgtaaacttctactatattatatattatatctATATTCTTATAA
TATTTTGATGATTACATCGAGACATCAATAATGCAATAAACATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031040XLOC_031040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048837-exon-scaffold_147-1491911889:240117..240150TCONS_00048837-exon-scaffold_147-1491911889:240117..240150Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:240117..240150TCONS_00048837-exon-scaffold_147-1510915933:240117..240150Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:240117..240150TCONS_00048837-exon-scaffold_147-1575043694:240117..240150Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:240981..241166TCONS_00048837-exon-scaffold_147-1491911889:240981..241166Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:240981..241166TCONS_00048837-exon-scaffold_147-1510915933:240981..241166Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:240981..241166TCONS_00048837-exon-scaffold_147-1575043694:240981..241166Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:245890..245979TCONS_00048837-exon-scaffold_147-1491911889:245890..245979Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:245890..245979TCONS_00048837-exon-scaffold_147-1510915933:245890..245979Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:245890..245979TCONS_00048837-exon-scaffold_147-1575043694:245890..245979Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:246903..246959TCONS_00048837-exon-scaffold_147-1491911889:246903..246959Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:246903..246959TCONS_00048837-exon-scaffold_147-1510915933:246903..246959Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:246903..246959TCONS_00048837-exon-scaffold_147-1575043694:246903..246959Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:247230..247289TCONS_00048837-exon-scaffold_147-1491911889:247230..247289Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:247230..247289TCONS_00048837-exon-scaffold_147-1510915933:247230..247289Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:247230..247289TCONS_00048837-exon-scaffold_147-1575043694:247230..247289Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:248477..248532TCONS_00048837-exon-scaffold_147-1491911889:248477..248532Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:248477..248532TCONS_00048837-exon-scaffold_147-1510915933:248477..248532Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:248477..248532TCONS_00048837-exon-scaffold_147-1575043694:248477..248532Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:248749..248791TCONS_00048837-exon-scaffold_147-1491911889:248749..248791Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:248749..248791TCONS_00048837-exon-scaffold_147-1510915933:248749..248791Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:248749..248791TCONS_00048837-exon-scaffold_147-1575043694:248749..248791Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:249020..249073TCONS_00048837-exon-scaffold_147-1491911889:249020..249073Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:249020..249073TCONS_00048837-exon-scaffold_147-1510915933:249020..249073Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:249020..249073TCONS_00048837-exon-scaffold_147-1575043694:249020..249073Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:250022..250093TCONS_00048837-exon-scaffold_147-1491911889:250022..250093Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:250022..250093TCONS_00048837-exon-scaffold_147-1510915933:250022..250093Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:250022..250093TCONS_00048837-exon-scaffold_147-1575043694:250022..250093Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1491911889:253322..253861TCONS_00048837-exon-scaffold_147-1491911889:253322..253861Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1510915933:253322..253861TCONS_00048837-exon-scaffold_147-1510915933:253322..253861Clytia hemisphaericaexon
TCONS_00048837-exon-scaffold_147-1575043694:253322..253861TCONS_00048837-exon-scaffold_147-1575043694:253322..253861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:240117..253861 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.2302e-08	4.27421e-05	0.00717795	0.719216	1.19486e-05	7.48593e-06	3.30211e-05	0.271508	0	4.4936	3.44148	0	3.41683e-05	1.04081	1.15391	5.89906	2.36099	3.91113	5.32689	3.95945	4.70462	4.45054	5.79544	1.83458	1.59331	9.58925	8.04504
Blast
[Close]
BLAST of TCONS_00048837 vs. Swiss-Prot (Human)
Match: SEGN (Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.020e-21
Identity = 57/180 (31.67%), Postives = 101/180 (56.11%), Query Frame = 2 
Query:  248 EKDFLDVFRKEYKVDA-VTFMKAFEEADEDGNGQISSSELIKFLKALGVDAKET------EELKEHIIELYDKNHDGKLGLTELSKLLQSDQNVLKAFVEGEDLTEEK---FNEVFAHYDRDNGGTINNSELSGFLKDMKSTQDVNVESKELKEYEIWILGEADKNNDGELSKDELRMLF 757
            +++FL +FR+E  +D+ V FM+ + + D D +G IS++EL  FL+ L +  K+       EE    +++++D+N DG+L L +L+++L   +N L  F      TEE+   F ++FA+YD    G +   E+ GF+KDM      ++   +L ++   +L   D N DG++ K EL +  
Sbjct:   91 DENFLLLFRRENPLDSSVEFMQIWRKYDADSSGFISAAELRNFLRDLFLHHKKAISEAKLEEYTGTMMKIFDRNKDGRLDLNDLARILALQENFLLQFKMDACSTEERKRDFEKIFAYYDVSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCL 270
The following BLAST results are available for this feature:
BLAST of TCONS_00048837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEGN4.020e-2131.67Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2[more]
back to top