TCONS_00048823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048823
Unique NameTCONS_00048823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048823 ID=TCONS_00048823|Name=TCONS_00048823|organism=Clytia hemisphaerica|type=transcript|length=602bp
TTTTGGTATGAAAAGTTTGGCATCTTAAATTTTATCAAACGATGTTAGAT
GGTCTATGGATTTACGTTGGCAAGACCCAAGACAACCTACCGGCCGTCCA
TCTGATGAGAAGTTACCATTGTTTCGAAGCCAACAGACCCCTGTTAAAGA
AATCGATTGGTCTGTTCTCACCAACCGACAACAGAATGATCGAAAAGTGT
TTTTAGAATCTGAGAAATTGGCTGAGGTGGAATTCGAAACAAGACTCGGT
GGCCCGTGGATGAAACGGTGGCCCATCAAACATCATAATAGAATACAGAT
TATGAGAATAGCAAATTAATAATATcctgaaaataaattattttggaGCT
AGGTTGTAAAATCTCTTAAAATTCTTTTATCCTATTATCTTTAATACTTT
GGCATTTTCAATTCCTGGCTTCTATTTCTTAAACAATTACGTATATCTTC
AAATACTGTTTACGATACTGCTGCAACACAGTGAAGCCTTGAGATgttgt
taactttttgagttttaagcctaaaaatgttcttcattttccccattttg
tgggtatttttatccattttcctgagaaatcggatgttttagtccccgaa
gc
Run BLAST on NCBI

transcript from alignment at scaffold_147:75084..82269+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048823 ID=TCONS_00048823|Name=TCONS_00048823|organism=Clytia hemisphaerica|type=transcript|length=7186bp|location=Sequence derived from alignment at scaffold_147:75084..82269+ (Clytia hemisphaerica)
TTTTGGTATGAAAAGTTTGGCATCTTAAATTTTGTGAGTAGTGATTTCTG
TATTTGAAATGGAAACAAcactgtgtcacagacccgctgggaccccagcc
ccactggaaaatttgtccaaaatttcgtccccggtactgaaaatacccca
aaatttcagccctactgggaaattgactttgattacatCCTTATTCAAAT
CATtgtaaaaaaattgcactccaaaaccatcaccACTGGATTTTTAAGCT
TGGAACAATGATAGAATCTCTATCTCCATTGGGATTACGGTGGATCATTC
GACCTCCTTGACGGCAGTCAAGATTGATAGCCACTATACATTACTACAAA
ATACACAGTATGTTTTTCTTTGACTgtttgtacaattttttttgggttca
gttgttatacattttctttcGGAGAAGTGAATTTAGAATCTTCATCAACA
GATCTGTATTGCTCTTTTCATGTATGGCGTGTGAAATTGTAGCAACTTCG
GTCTAAAGTATATAAGTATAGAAATTTCGTTGAgtcgaaagatttcaaag
acTTTCGAACTATGCAAAGNATATTTTGAAGGTCAGCTCAAATAAATGTT
GAAGTCctcatttctatttttcttataaaaatttcttgtactttttgatg
aaaatttgattAGGAAAGATATTAAGAGAGATATCTTTCTCATCAAATAT
TCTAATTTATATCTCAAtggataattttctttttttatttcaactggATT
GCTTCATTGTTACTTTGTTAATGAATTTTACCACACagaatattatatta
tattattgaaACTAAACAGGTTCGGGATCCAATTTGCACGCaactaaatt
tgaaatttgtgaaAGTTTTGCTTTGCACTTGGCTGATTATCAggttatac
cgggtgcgccacaaaaaagtttctctctttaaaactaattttcccaaaat
ctaaaaattttaaaaaaaccattcctattccattggaaagaagaaagata
aacttaaattttgatgggtcatttattaaatttggttgATGAGATCGAGA
GTTATGctatattgaataaaaaagttactttttgaaagtgctcaaaaacg
ttgaaaatcgacctatcaaattaaacagaaaaataataacataatgcatc
agtattttcgtttcagtcattaaaaatgataaataggTGTCTAAATGACc
gtttgttatataaaggaagatagaattttaataaaaggcagaaaattcgt
cgaaaaaagccaaaaaatctggtaaaattcataaaaatacatcaaatatg
ggtttcaaggtacatccagccttacatatactttatccagtctagaacca
aaaatctgaggaaaatctccttaaaagtaaattgaaatgattttgatgaa
ccTTTTAAACCCTTNggaattttatcaaaaactttatATAGCTTTGCAAA
TAAATTTTGAAGCATTATGACCTACATCAGACATCAGACTTTAAATATTA
TTTTACCAATTTTCCGTTTGAACCTATAAATGTCATGATCCATTGACTTT
GGCCACGGAAATAGATTACTCATCGGTTACATACGGTAAGATAGCATCAT
TGGCTCCCCGTATTGGTATCAATGAGGAGTTTTTGCAACGGAGTAAAGAT
TTTTCATCGGTTATCTAGCGCTACGGCATGCATCTAGCTTAATTCTCTAT
TTAACGTAAGTGTGAATCTGAAACCAAATTTTGTGTTGTTATCTAACAGA
CCCGACTCTTAGTAATGCTCTTGGTCAACTTCAGTTTGTTTTTAATCTGA
TTAGCTGATAATTCCGTTTTCGAGCTACAAAATTTTATCTATCATGGTCT
GGATTTCTTTCGGCATAGTCTGAATTTAAAGGTTACAGAGTAAGCAGCAC
GTTACAGTATCATCGACCTTTGAGATCAGAGAAACATTATGTCATATTTG
TAGCATCTTCGAACTTTTAAGGAGAATCAGCCAAAAACAAGGCACAAAAA
ATAACAAGTCTGTCTCTGATGAAATATTAAGATAGATTTATTGCTACTTG
TTTATAAATCAAAGCCATACAGATCTTATCTCTAAAACGAAGGAAGAGTT
CGTTCTACTAACTGTACAAGTAAGAAAGAAATTACATACACGAGCATACT
GCGTAAAGTTTTAGTGAAATCGGATACAAAGCCTAAACGCTAAATAAACA
AACACTCGTTAAGTTCTATAGATAATCACTTCGTAAAACGTCTGCAAAAA
CTTGTCGACTGTCTTATGTGTACAAAGTATGGTCTTTAGCGAAAAAATGG
ATGTGCGTAATGCTTTCAACACAGCTCCACAGCAGAACAAGGACCAACCC
TTCAAACCAGGTCAACTATCTGAGGAACAGATCAAACATTTCTTTAATAA
GGGATGGCTTATGGTACCTAACTTGATTGAACCTGAAGTTCTCAATGGTG
TTAAGGAAGGCATTGAGCGACAAATTGATGACCTGGCAGATCGATTACAC
ACAGCTGgtaaaattcaacataaacatgAAGATAAAGGATTTTGCCAAAG
GATTACTCATATTGAGTATGAATTCCCAGGAGCTGCTATATTGTTACACA
AATCTGGAATACTTCCTGGTGGTGCGAGAGAACTTTGGTCACATGAGAAG
ATATTGAATATTGGTGAACAGCTTATTGGTTCTGGTGAAATTGCTGGCCA
CCCTGTTTGGAATCTAAGAGTCAAGCTACCTGATTACGAGGTTGGAGTTG
TACCTTGGCATCAAGATAATTCTTACTTTGAGGATGAAAGTATGAAAACT
ATGATCCTAACCGGCTGGGTACCATTATTGGATACAGCTGAATTCAATGG
TGGTATGCAGATGATGGATGGTACTCAATCGAGTGGGAAATTGGCTGAAC
ATTTTTGTTGCGCTGGTGGTACCTTTTATTTGGAGATTGAAAAAGATGTG
ATCGAAGAGACTTTTGGATGTCGATTGGAGAATAAAACAGTATGTGAAGT
ACCGTATGGCGGAGTCCTGTTTTTCAGTAATATGATCGTTCACCGAAGTT
CCACAAACAGGTCAGTAGATTATAAATCCTTGCTTATCTGAGCATCGATT
AATCGAAACTTTGAATAATTCGAACAGATTCTTAGGCCCTTTCAAACACc
ccattctcacagacccacttgaaaaattgaccaaaatagaTACCGTCCCc
aatgaaaaattataattcAACTTTTGTTCCCACTAAAGATAATCAAATCA
ACCAATaatccccactgcaaaataATTAGCTATTTTTCTGAATtctctga
cttgaaaacaaggCAATTTAAATTCcccataaaaaatataaaaacgtcga
tccccattgagtttcagtccattatttttactcccactgactgaaaaaat
ctttcctgGTCTGTGAGAATGGGGTGTGTTCAAGGTGAAGCACctgtaca
cccctgtgtcacagacccgctaggCCCCCAGGCCTACTAGAAAACTTGGC
AAACatttcgtccccggtagaaaaaataccctagaatttcagccccactg
agaaatcGACTTTAATTTTGTCTCCACtcgaaattcattgttttgaaatt
tcactccaaaactattcccactggattttttagccTTGTAACAATGTAAT
TTTTATCCCTATTGAGATTGaaaggaaaaagtttcaccggggctgtgaga
caggagtgtacTCTTAAAGTGCTTTTTAAGGATCTTACTgtaatcaaaga
aaatattttttccaattcCAGTTCAAATGAACTTTCGAACTTTTCTTATT
ACTCCGCGAATTTCGGCTTTTGAAAACATGTACACTGAAGAGATAGATCG
TAACAAGAGCTTTCCAGTACAACCCAAATTTAACCAGTTTTGTAATATTG
TGATAATTTAAGGAAGGGATGGTGCAATTTATGTAGAAATGAATGAATTA
AAAGCTTACCTAAAATAACCATTTAGCTGGTTTTAAGTCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAATGTGGGTAACTTGTGGTAGCTTGGATGCTTTTTTGG
CGTTATCTGTTCTATGATCGTCACGTTGTTTTCTGTCAGCTGCGTCCAGT
TACCATCGGTTgtcctgaaaaaaggaaaagagaGAACGACAAAGAAACTT
CGATTTTTGTAACCCTGATCTTAATTGAAGCAAGGACAAAAAATATCTTA
CGTAttttacaaacaaaaaacaaatctgACGAAACATGATGTTTTAAGTC
ATTCGAGTAAAAGGATAACCCGCCAGAAGGCTGGCAAGCACAACAAAATT
AGCTCCCGTCATAAGGCTAGCAAGCACTGAATTACGTTTactcaaataga
aaaaaaattgatgattatTTTATTTGTATAAGTTTTAGGTCATTCGAGTA
AAAGGTTAACGTGCCAGAAGGCTGACAAGCACAACAAAATTAGCACCCGC
CATAAGGCTAGCAAGCACTGAATTACATTTActcaaatggaaaaaattgg
atgATTTTATTTGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTGTACTTGGTTCTCAAACATGAATATATATTAAAACATTTCAAGA
CATGTTTAGGGATATTTATCAACAGATTATATGAAACAAACAAATTCTTA
GACCAATTAATGTTTTTCACAAGAAAAGAATATTTACCTTACACGTATTT
ATTGATCGATATTGCAGATCAAACGATGTTAGATGGTCTATGGATTTACG
TTGGCAAGACCCAAGACAACCTACCGGCCGTCCATCTGATGAGAAGTTAC
CATTGTTTCGAAGCCAACAGACCCCTGTTAAAGAAATCGATTGGTCTGTT
CTCACCAACCGACAACAGAATGATCGAAAAGTGTTTTTAGAATCTGAGAA
ATTGGCTGAGGTGGAATTCGAAACAAGACTCGGTGGCCCGTGGATGAAAC
GGTGGCCCATCAAACATCATAATAGAATACAGATTATGAGAATAGCAAAT
TAATAATATcctgaaaataaattattttggaGCTAGGTTGTAAAATCTCT
TAAAATTCTTTTATCCTATTATCTTTAATACTTTGGCATTTTCAATTCCT
GGCTTCTATTTCTTAAACAATTACGTATATCTTCAAATACTGTTTACGAT
ACTGCTGCAACACAGTGAAGCCTTGAGATgttgttaactttttgagtttt
aagcctaaaaatgttcttcattttccccattttgtgggtatttttatcca
ttttcctgagaaatcggatgttttagtccccgaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031036XLOC_031036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048823-exon-scaffold_147-1491911889:75084..75116TCONS_00048823-exon-scaffold_147-1491911889:75084..75116Clytia hemisphaericaexon
TCONS_00048823-exon-scaffold_147-1510915933:75084..75116TCONS_00048823-exon-scaffold_147-1510915933:75084..75116Clytia hemisphaericaexon
TCONS_00048823-exon-scaffold_147-1575043694:75084..75116TCONS_00048823-exon-scaffold_147-1575043694:75084..75116Clytia hemisphaericaexon
TCONS_00048823-exon-scaffold_147-1491911889:81701..82269TCONS_00048823-exon-scaffold_147-1491911889:81701..82269Clytia hemisphaericaexon
TCONS_00048823-exon-scaffold_147-1510915933:81701..82269TCONS_00048823-exon-scaffold_147-1510915933:81701..82269Clytia hemisphaericaexon
TCONS_00048823-exon-scaffold_147-1575043694:81701..82269TCONS_00048823-exon-scaffold_147-1575043694:81701..82269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:75084..82269 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00516592	0.102213	0.0999995	0.12174	0	0	0.198052	0	0.401938	0.0914598	0.291517	0	0	0	0	0	0	0.542454	0	0	0	0	0	0.159604	0.106806	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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