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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048822 ID=TCONS_00048822|Name=TCONS_00048822|organism=Clytia hemisphaerica|type=transcript|length=958bp
tttagaaCTACCTTGAAAAAGTTACTACCAATAAACACGCAGTAGAATTT
ATCCATAATTTATCCGACAATTTTCAACAAGTTCGTCATGATTCGTGCAA
CGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATAT
CAAACGTTACATTTCCACAGTGAAGtAATGGGAGTATTACAAGACGAAAA
CAAACGTAAAATCCATTCCACATCCGGTATTGATGTGGCTGCAAAGAAAC
GGTTAATGTACAGCAAACAAAAAATCAATACTGCATTTTCTCAAAGCATA
GATAGCCCTttatcaaaattgcaaaatgtacATAGTCCCTTATCAACACC
AAGAAGTCGAAAATCTTCAGTGGTACAAATTAAACGACAAAGCTTTGATG
AATATAGCGACGATGATATGTTGTCGGTAAGTTTATCGTCCGACGACGAC
GACGCTTTCGTCGCGACGGTTTGTTATGTTGACGGATGCTCGATCAAGAA
TAAATCGCGACTGAAATTTTCCGGTAAAAGTGAAAGTATCTGTGAAGGTG
ACGAAGAGTTTTAAGATATGTTAAAAACCGATGAAAACAAAATGTACTAA
AAAACTTTACTTTGTAAATATTGTAAATAAACTTAAAACAGTAAGATTTt
tatttaagaatttttttgaatcatttttttgtaaaaaggaaGTTTTTTTG
GGGGAAACAAATATCTATACCTAAATTTATTTAAAGACAATTTGTTTTAG
ATACTTCCCTACTTGTATATATATTCCCAAACATACAAAGTTTAGATTTC
GATAAGGGGTACAAACTATTGCTCACCTTCATCTGCTGCAACATGGTCAG
tttcatccttttttgacatCGCTAACACTGACCTTCATATATCCTttgac
caagttactcaatgccggccaagcaaaatatttaggattggagttttttt
gaaattgg Run BLAST on NCBI protein sequence of TCONS_00048822-protein >TCONS_00048822-protein ID=TCONS_00048822-protein|Name=TCONS_00048822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MIRATSTDSRVVDINKVQYKYQTLHFHSEVMGVLQDENKRKIHSTSGIDV
AAKKRLMYSKQKINTAFSQSIDSPLSKLQNVHSPLSTPRSRKSSVVQIKR
QSFDEYSDDDMLSVSLSSDDDDAFVATVCYVDGCSIKNKSRLKFSGKSES
ICEGDEEF Run BLAST on NCBI transcript from alignment at scaffold_147:52703..54604+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048822 ID=TCONS_00048822|Name=TCONS_00048822|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at scaffold_147:52703..54604+ (Clytia hemisphaerica)
tttagaaCTACCTTGAAAAAGTTACTACCAATAAACACGCAGTAGAATTT
ATCCATAATTTATCCGACAATTTTCAACAAGTTCGTCATGATTCGTGCAA
CGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATAT
CAAACGTTACATTTCCACAGTGAAGGTAAATTTTTGCCAAGCAAGTTTTT
TTTCGTGGTGTAAAACCTTTAATCAACCTTTGCCACCGGGATTGAAAAAG
TATATGATCTTGTGTATCATAACAACCTTccttctattgcaattttaatT
ACATCAACAATTTCCTGCTATAAAACCTTGCTAAGTTGACGGGATTCTGA
GGCCAATTTGTAGCAAATCAGACTCAACGACAGTAAAGGCACCCTTTTCA
GAAAACATGAACAACATGAACTTTTTCGATATATGAACATTTCATTTTTT
AGGCTAAAACGAAGTGTTTTCATGATGCTTTCATTAACCAGCCTGTCAGT
TTTTACTATTCTATGCCTGGTAGACAAATTATGACGTTTTTGACACATGA
AGCATGCGTGAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncataagggtaccttttctcattcctcaaaagtctctcaaaggggtacaa
attcaaaagttagtctctgaaagggtcccaaaatcacaaaaatcaaaaat
ttttctctcaaagggtcacgatttccaagaattttgcccaaaatttggtg
aacttcaaaccaaaatttggaaaaaatggaccaaaatttaggaaaaagtc
tctcaaagggtcccaaaatcaccaaaatattgtctctcaaagggtcgatt
ttcgattttcggctcggacatacccgtcacctcgcaaacctagtaccccc
cggggtaACACTCAGGATCGTTCCTTTACAGTTTCAAATATACgagttta
attttttcttattttatagtAATGGGAGTATTACAAGACGAAAACAAACG
TAAAATCCATTCCACATCCGGTATTGATGTGGCTGCAAAGAAACGGTTAA
TGTACAGCAAACAAAAAATCAATACTGCATTTTCTCAAAGCATAGATAGC
CCTttatcaaaattgcaaaatgtacATAGTCCCTTATCAACACCAAGAAG
TCGAAAATCTTCAGTGGTACAAATTAAACGACAAAGCTTTGATGAATATA
GCGACGATGATATGTTGTCGGTAAGTTTATCGTCCGACGACGACGACGCT
TTCGTCGCGACGGTTTGTTATGTTGACGGATGCTCGATCAAGAATAAATC
GCGACTGAAATTTTCCGGTAAAAGTGAAAGTATCTGTGAAGGTGACGAAG
AGTTTTAAGATATGTTAAAAACCGATGAAAACAAAATGTACTAAAAAACT
TTACTTTGTAAATATTGTAAATAAACTTAAAACAGTAAGATTTttattta
agaatttttttgaatcatttttttgtaaaaaggaaGTTTTTTTGGGGGAA
ACAAATATCTATACCTAAATTTATTTAAAGACAATTTGTTTTAGATACTT
CCCTACTTGTATATATATTCCCAAACATACAAAGTTTAGATTTCGATAAG
GGGTACAAACTATTGCTCACCTTCATCTGCTGCAACATGGTCAGtttcat
ccttttttgacatCGCTAACACTGACCTTCATATATCCTttgaccaagtt
actcaatgccggccaagcaaaatatttaggattggagtttttttgaaatt
gg Coding sequence (CDS) from alignment at scaffold_147:52703..54604+ >TCONS_00048822 ID=TCONS_00048822|Name=TCONS_00048822|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_147:52703..54604+ (Clytia hemisphaerica)
ATGATTCGTGCAACGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGT
GCAATACAAATATCAAACGTTACATTTCCACAGTGAAGtAATGGGAGTAT
TACAAGACGAAAACAAACGTAAAATCCATTCCACATCCGGTATTGATGTG
GCTGCAAAGAAACGGTTAATGTACAGCAAACAAAAAATCAATACTGCATT
TTCTCAAAGCATAGATAGCCCTttatcaaaattgcaaaatgtacATAGTC
CCTTATCAACACCAAGAAGTCGAAAATCTTCAGTGGTACAAATTAAACGA
CAAAGCTTTGATGAATATAGCGACGATGATATGTTGTCGGTAAGTTTATC
GTCCGACGACGACGACGCTTTCGTCGCGACGGTTTGTTATGTTGACGGAT
GCTCGATCAAGAATAAATCGCGACTGAAATTTTCCGGTAAAAGTGAAAGT
ATCTGTGAAGGTGACGAAGAGTTTTAAATGATTCGTGCAACGTCAACAGA
TTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATATCAAACGTTAC
ATTTCCACAGTGAAGtAATGGGAGTATTACAAGACGAAAACAAACGTAAA
ATCCATTCCACATCCGGTATTGATGTGGCTGCAAAGAAACGGTTAATGTA
CAGCAAACAAAAAATCAATACTGCATTTTCTCAAAGCATAGATAGCCCTt
tatcaaaattgcaaaatgtacATAGTCCCTTATCAACACCAAGAAGTCGA
AAATCTTCAGTGGTACAAATTAAACGACAAAGCTTTGATGAATATAGCGA
CGATGATATGTTGTCGGTAAGTTTATCGTCCGACGACGACGACGCTTTCG
TCGCGACGGTTTGTTATGTTGACGGATGCTCGATCAAGAATAAATCGCGA
CTGAAATTTTCCGGTAAAAGTGAAAGTATCTGTGAAGGTGACGAAGAGTT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048822-exon-scaffold_147-1491911889:52703..52877 | TCONS_00048822-exon-scaffold_147-1491911889:52703..52877 | Clytia hemisphaerica | exon |
| TCONS_00048822-exon-scaffold_147-1510915933:52703..52877 | TCONS_00048822-exon-scaffold_147-1510915933:52703..52877 | Clytia hemisphaerica | exon |
| TCONS_00048822-exon-scaffold_147-1575043694:52703..52877 | TCONS_00048822-exon-scaffold_147-1575043694:52703..52877 | Clytia hemisphaerica | exon |
| TCONS_00048822-exon-scaffold_147-1491911889:53822..54604 | TCONS_00048822-exon-scaffold_147-1491911889:53822..54604 | Clytia hemisphaerica | exon |
| TCONS_00048822-exon-scaffold_147-1510915933:53822..54604 | TCONS_00048822-exon-scaffold_147-1510915933:53822..54604 | Clytia hemisphaerica | exon |
| TCONS_00048822-exon-scaffold_147-1575043694:53822..54604 | TCONS_00048822-exon-scaffold_147-1575043694:53822..54604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:52703..54604 + |
Blast
The following BLAST results are available for this feature:
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