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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048798 ID=TCONS_00048798|Name=TCONS_00048798|organism=Clytia hemisphaerica|type=transcript|length=1856bp
gacGTATCGGGTGGGATAAAAAACAGTAAAGTTGCATAATCTCGTGAAGT
CactgcagtggtgcatatcatgaatacacgCTTCGTAAAAGGTGATTTTA
CATTCTATCTCTGCTTAATGTCTTTGAGGTCCAATTAGTTTATTATATGG
TCAGTAAAATTGTCCTGTGCCACATATTATCAGGAAAATTGAGGTCGTCA
TGGCAATAACGATTTGCATGAAACCGAGGCTTTTCAGGGCGACTGAAGAT
GATTGAAGCTGTGTTGAATTTGACGTCAGTATACTTGCTTCGATAGTGGT
AGGCGAACTTGAGGGCATTGATCGGGTGGTTGAGTTTTCATCTGTATGGT
GTGAAGTGGTCGTTAAGGATGTTGGAGTGGTAACTTTTCGACATGGGTTG
TTGCTGTTGAAGTCAGTAACGAGTTTACAGAAGAGAGGTTCATCAACGCA
GAAATCACAATGAGGGTTGATATCACCTCGATGTGCTAATAAAGTAGAGG
AAGCTGCAGTGcaaattcctttgaaatcatGCTCAGCAGATTGTGGTTGA
TCAAGTATTTCACAAAGAGCTTCAGCATTCTCGCAATTACATCTTTCACT
GAGGTCCAGGCTTGGATATACGTGTGTGTTAGCATCCTCTGTCATAGCCT
CACATATTGCGTCTAAAGAAAGATTGGTTGGACAGTCCGTGTTATTCAAA
GAAAGTTCCTCTCCTTTTAAGTCCTCTCCGCCGGTGCTTTTTTCATCACA
TTTTGTAAGAACTTGACAGAGGTTTGGTTCTTCATTGCAGCTTTCGCAAA
TCAATCTATACACCACCAACTCAACTAATTTCTCTTGAACCATATTACAG
ATTGAAAACAAATCATATGGTGGCCCATTATCTAATGCTTGGCAAAGACT
TGGTGTATGTTGGCAATGACAGTGATGGTCAAAGTTCAAAAGCTGAGGGT
TGTTATACCGGTCTACATCCTTGGTAACTGCATCACATACTTCTGGCAAA
GTGACTTTACAATTACTGGAGTTGGTATGAATAGACGGTTGAGTCGGTTT
GGTGACGGTATCTGTTAATAGTCCTGacactgttgttgttgtttcacCAC
TCTTTAAGCCGCATACGGCAAGCGCTTCACATAGACTTGGTTCATCTTTG
CAATCAAAGCATACCATATGATAGACATTGTAGTCGACAATGGTCGCTTG
TGCAATATCGCATATTTTGGCAAAATCATAAGGACCACCTTTGTCTAATT
CTTCACATAATGTTGGTGCGAAACTACAATTACAAGTATTGTTTAAATCG
AGTAATTCGGGGTTTGAGAACCTCTTGACGTCAAAATAAGCTGCATCACA
CACAGACTGTAACGACACTTTGCAGACCCCTGATGTACTGTTCGGATACG
TGGTCACACTAGCAAGGTCTGTTGTTTTTGACGTTGGTATTATGGTAGAT
TCGGCGGCCCGTGCATTATATTTAGTGATCAATTCACACAAAGTTGGTTC
ATCGTAACAATTGAAACATATCATTTGGTAGATGTAAGTCTCCCCAATGC
TGGTTTTCATTCTTGGACAAATTCTTTGAAACTCATACGGTGCACCTTTG
TCAAGCTCTTCACAGGTTGAACCATGCGTTGCACAAttacaatttgtttt
caaatcagCCAGTCTTTCGGCGCTGAAAAACCTCAAAGCATCAAGGTAGA
CCGCATCGCAGATATCTTGCACTGAAAGTTTACAGGTTTGTGTGTCTGTG
GTAGGATTTATTGACGCTGTTGTTGTTGTCACGTGTTGACTGGTTGGTGC
AGTTGTGGCAACTTCAGTTGTGGATCCAACAACTAATTCTGTATTCGATG
AAGCCA Run BLAST on NCBI protein sequence of TCONS_00048798-protein >TCONS_00048798-protein ID=TCONS_00048798-protein|Name=TCONS_00048798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
ASSNTELVVGSTTEVATTAPTSQHVTTTTASINPTTDTQTCKLSVQDICD
AVYLDALRFFSAERLADLKTNCNCATHGSTCEELDKGAPYEFQRICPRMK
TSIGETYIYQMICFNCYDEPTLCELITKYNARAAESTIIPTSKTTDLASV
TTYPNSTSGVCKVSLQSVCDAAYFDVKRFSNPELLDLNNTCNCSFAPTLC
EELDKGGPYDFAKICDIAQATIVDYNVYHMVCFDCKDEPSLCEALAVCGL
KSGETTTTVSGLLTDTVTKPTQPSIHTNSSNCKVTLPEVCDAVTKDVDRY
NNPQLLNFDHHCHCQHTPSLCQALDNGPPYDLFSICNMVQEKLVELVVYR
LICESCNEEPNLCQVLTKCDEKSTGGEDLKGEELSLNNTDCPTNLSLDAI
CEAMTEDANTHVYPSLDLSERCNCENAEALCEILDQPQSAEHDFKGICTA
ASSTLLAHRGDINPHCDFCVDEPLFCKLVTDFNSNNPCRKVTTPTSLTTT
SHHTDENSTTRSMPSSSPTTIEASILTSNSTQLQSSSVALKSLGFMQIVI
AMTTSIFLIICGTGQFY Run BLAST on NCBI transcript from alignment at scaffold_146:206864..208719 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048798 ID=TCONS_00048798|Name=TCONS_00048798|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_146:206864..208719 (Clytia hemisphaerica)
TGGCTTCATCGAATACAGAATTAGTTGTTGGATCCACAACTGAAGTTGCC
ACAACTGCACCAACCAGTCAACACGTGACAACAACAACAGCGTCAATAAA
TCCTACCACAGACACACAAACCTGTAAACTTTCAGTGCAAGATATCTGCG
ATGCGGTCTACCTTGATGCTTTGAGGTTTTTCAGCGCCGAAAGACTGGct
gatttgaaaacaaattgtaaTTGTGCAACGCATGGTTCAACCTGTGAAGA
GCTTGACAAAGGTGCACCGTATGAGTTTCAAAGAATTTGTCCAAGAATGA
AAACCAGCATTGGGGAGACTTACATCTACCAAATGATATGTTTCAATTGT
TACGATGAACCAACTTTGTGTGAATTGATCACTAAATATAATGCACGGGC
CGCCGAATCTACCATAATACCAACGTCAAAAACAACAGACCTTGCTAGTG
TGACCACGTATCCGAACAGTACATCAGGGGTCTGCAAAGTGTCGTTACAG
TCTGTGTGTGATGCAGCTTATTTTGACGTCAAGAGGTTCTCAAACCCCGA
ATTACTCGATTTAAACAATACTTGTAATTGTAGTTTCGCACCAACATTAT
GTGAAGAATTAGACAAAGGTGGTCCTTATGATTTTGCCAAAATATGCGAT
ATTGCACAAGCGACCATTGTCGACTACAATGTCTATCATATGGTATGCTT
TGATTGCAAAGATGAACCAAGTCTATGTGAAGCGCTTGCCGTATGCGGCT
TAAAGAGTGgtgaaacaacaacaacagtgtCAGGACTATTAACAGATACC
GTCACCAAACCGACTCAACCGTCTATTCATACCAACTCCAGTAATTGTAA
AGTCACTTTGCCAGAAGTATGTGATGCAGTTACCAAGGATGTAGACCGGT
ATAACAACCCTCAGCTTTTGAACTTTGACCATCACTGTCATTGCCAACAT
ACACCAAGTCTTTGCCAAGCATTAGATAATGGGCCACCATATGATTTGTT
TTCAATCTGTAATATGGTTCAAGAGAAATTAGTTGAGTTGGTGGTGTATA
GATTGATTTGCGAAAGCTGCAATGAAGAACCAAACCTCTGTCAAGTTCTT
ACAAAATGTGATGAAAAAAGCACCGGCGGAGAGGACTTAAAAGGAGAGGA
ACTTTCTTTGAATAACACGGACTGTCCAACCAATCTTTCTTTAGACGCAA
TATGTGAGGCTATGACAGAGGATGCTAACACACACGTATATCCAAGCCTG
GACCTCAGTGAAAGATGTAATTGCGAGAATGCTGAAGCTCTTTGTGAAAT
ACTTGATCAACCACAATCTGCTGAGCatgatttcaaaggaatttgCACTG
CAGCTTCCTCTACTTTATTAGCACATCGAGGTGATATCAACCCTCATTGT
GATTTCTGCGTTGATGAACCTCTCTTCTGTAAACTCGTTACTGACTTCAA
CAGCAACAACCCATGTCGAAAAGTTACCACTCCAACATCCTTAACGACCA
CTTCACACCATACAGATGAAAACTCAACCACCCGATCAATGCCCTCAAGT
TCGCCTACCACTATCGAAGCAAGTATACTGACGTCAAATTCAACACAGCT
TCAATCATCTTCAGTCGCCCTGAAAAGCCTCGGTTTCATGCAAATCGTTA
TTGCCATGACGACCTCAATTTTCCTGATAATATGTGGCACAGGACAATTT
TACTGACCATATAATAAACTAATTGGACCTCAAAGACATTAAGCAGAGAT
AGAATGTAAAATCACCTTTTACGAAGcgtgtattcatgatatgcaccact
gcagtGACTTCACGAGATTATGCAACTTTACTGTTTTTTATCCCACCCGA
TACgtc Coding sequence (CDS) from alignment at scaffold_146:206864..208719 >TCONS_00048798 ID=TCONS_00048798|Name=TCONS_00048798|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_146:206864..208719 (Clytia hemisphaerica)
GCTTCATCGAATACAGAATTAGTTGTTGGATCCACAACTGAAGTTGCCAC
AACTGCACCAACCAGTCAACACGTGACAACAACAACAGCGTCAATAAATC
CTACCACAGACACACAAACCTGTAAACTTTCAGTGCAAGATATCTGCGAT
GCGGTCTACCTTGATGCTTTGAGGTTTTTCAGCGCCGAAAGACTGGctga
tttgaaaacaaattgtaaTTGTGCAACGCATGGTTCAACCTGTGAAGAGC
TTGACAAAGGTGCACCGTATGAGTTTCAAAGAATTTGTCCAAGAATGAAA
ACCAGCATTGGGGAGACTTACATCTACCAAATGATATGTTTCAATTGTTA
CGATGAACCAACTTTGTGTGAATTGATCACTAAATATAATGCACGGGCCG
CCGAATCTACCATAATACCAACGTCAAAAACAACAGACCTTGCTAGTGTG
ACCACGTATCCGAACAGTACATCAGGGGTCTGCAAAGTGTCGTTACAGTC
TGTGTGTGATGCAGCTTATTTTGACGTCAAGAGGTTCTCAAACCCCGAAT
TACTCGATTTAAACAATACTTGTAATTGTAGTTTCGCACCAACATTATGT
GAAGAATTAGACAAAGGTGGTCCTTATGATTTTGCCAAAATATGCGATAT
TGCACAAGCGACCATTGTCGACTACAATGTCTATCATATGGTATGCTTTG
ATTGCAAAGATGAACCAAGTCTATGTGAAGCGCTTGCCGTATGCGGCTTA
AAGAGTGgtgaaacaacaacaacagtgtCAGGACTATTAACAGATACCGT
CACCAAACCGACTCAACCGTCTATTCATACCAACTCCAGTAATTGTAAAG
TCACTTTGCCAGAAGTATGTGATGCAGTTACCAAGGATGTAGACCGGTAT
AACAACCCTCAGCTTTTGAACTTTGACCATCACTGTCATTGCCAACATAC
ACCAAGTCTTTGCCAAGCATTAGATAATGGGCCACCATATGATTTGTTTT
CAATCTGTAATATGGTTCAAGAGAAATTAGTTGAGTTGGTGGTGTATAGA
TTGATTTGCGAAAGCTGCAATGAAGAACCAAACCTCTGTCAAGTTCTTAC
AAAATGTGATGAAAAAAGCACCGGCGGAGAGGACTTAAAAGGAGAGGAAC
TTTCTTTGAATAACACGGACTGTCCAACCAATCTTTCTTTAGACGCAATA
TGTGAGGCTATGACAGAGGATGCTAACACACACGTATATCCAAGCCTGGA
CCTCAGTGAAAGATGTAATTGCGAGAATGCTGAAGCTCTTTGTGAAATAC
TTGATCAACCACAATCTGCTGAGCatgatttcaaaggaatttgCACTGCA
GCTTCCTCTACTTTATTAGCACATCGAGGTGATATCAACCCTCATTGTGA
TTTCTGCGTTGATGAACCTCTCTTCTGTAAACTCGTTACTGACTTCAACA
GCAACAACCCATGTCGAAAAGTTACCACTCCAACATCCTTAACGACCACT
TCACACCATACAGATGAAAACTCAACCACCCGATCAATGCCCTCAAGTTC
GCCTACCACTATCGAAGCAAGTATACTGACGTCAAATTCAACACAGCTTC
AATCATCTTCAGTCGCCCTGAAAAGCCTCGGTTTCATGCAAATCGTTATT
GCCATGACGACCTCAATTTTCCTGATAATATGTGGCACAGGACAATTTTA
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048798-exon-scaffold_146-1491911889:206864..208719 | TCONS_00048798-exon-scaffold_146-1491911889:206864..208719 | Clytia hemisphaerica | exon |
| TCONS_00048798-exon-scaffold_146-1510915933:206864..208719 | TCONS_00048798-exon-scaffold_146-1510915933:206864..208719 | Clytia hemisphaerica | exon |
| TCONS_00048798-exon-scaffold_146-1575043694:206864..208719 | TCONS_00048798-exon-scaffold_146-1575043694:206864..208719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:206864..208719 . |
Blast
The following BLAST results are available for this feature:
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