TCONS_00048784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048784
Unique NameTCONS_00048784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048784 ID=TCONS_00048784|Name=TCONS_00048784|organism=Clytia hemisphaerica|type=transcript|length=630bp
catcgcttttctagaaaaatcaaaaactcccatAAGGTCTATTAAGGTCT
GGTAAACTAAAATTCGTGCAACGAAATGGTGTCGAAAGTTGTATTTGGGC
AAAAGGATAATAATATAGAGCACTgacttttatgatttttatattttgac
tgTGAGTATGGAAACTGGCTTTATTAACGAATCAAACGATCCGTTACCaa
gaacaaaatcaaaaaatttgaaatagaaaacaaaacatGTCAATGAAAGA
GTCATTATATCGGCAAACATACGAAGAGCCACAAAGTTTGACCAATGATG
ATTACATACCCTTGACTGAAGAACAGATTAAACAAATAAAAGTTGTGCCG
GTTGGCTATAAGTTTCAAATTATGATcgtgttaaaaaataaaggcctgtt
ttgtgacatttccaAAGTGGCTTAcatttatttcaataaaatgaGTATTT
TGGGTGGCTGACAGCTCAATCTTTCACATAGATAACTAGAATGATAAatc
ttttcaatttctttggaGCGAAATTAAGTGGCTTCATAGTTTAAGAGATA
TTTCAAGTTAAGttatgagtcgtttatgtgGCTGACAATGTTGGTGGCTT
ACAAAACTAACCATTTTTAAGAGGCCATAG
Run BLAST on NCBI

transcript from alignment at scaffold_146:75655..76284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048784 ID=TCONS_00048784|Name=TCONS_00048784|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at scaffold_146:75655..76284 (Clytia hemisphaerica)
CTATGGCCTCTTAAAAATGGTTAGTTTTGTAAGCCACCAACATTGTCAGC
cacataaacgactcataaCTTAACTTGAAATATCTCTTAAACTATGAAGC
CACTTAATTTCGCtccaaagaaattgaaaagatTTATCATTCTAGTTATC
TATGTGAAAGATTGAGCTGTCAGCCACCCAAAATACtcattttattgaaa
taaatgTAAGCCACTTtggaaatgtcacaaaacaggcctttattttttaa
cacgATCATAATTTGAAACTTATAGCCAACCGGCACAACTTTTATTTGTT
TAATCTGTTCTTCAGTCAAGGGTATGTAATCATCATTGGTCAAACTTTGT
GGCTCTTCGTATGTTTGCCGATATAATGACTCTTTCATTGACatgttttg
ttttctatttcaaattttttgattttgttcttGGTAACGGATCGTTTGAT
TCGTTAATAAAGCCAGTTTCCATACTCAcagtcaaaatataaaaatcata
aaagtcAGTGCTCTATATTATTATCCTTTTGCCCAAATACAACTTTCGAC
ACCATTTCGTTGCACGAATTTTAGTTTACCAGACCTTAATAGACCTTatg
ggagtttttgatttttctagaaaagcgatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031003XLOC_031003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048784-exon-scaffold_146-1491911889:75655..76284TCONS_00048784-exon-scaffold_146-1491911889:75655..76284Clytia hemisphaericaexon
TCONS_00048784-exon-scaffold_146-1510915933:75655..76284TCONS_00048784-exon-scaffold_146-1510915933:75655..76284Clytia hemisphaericaexon
TCONS_00048784-exon-scaffold_146-1575043694:75655..76284TCONS_00048784-exon-scaffold_146-1575043694:75655..76284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:75655..76284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421351	0.0821767	0.286245	0.280046	0.340929	0.0898023	0.216685	0.405716	0	0	0	0.0561235	0.168136	0	0.0478514	0	0	0.129682	0	0.18748	0.0814772	0.119225	0	0.175688	0.180954	0.242246	0	0.369958	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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