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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048743 ID=TCONS_00048743|Name=TCONS_00048743|organism=Clytia hemisphaerica|type=transcript|length=3091bp
TacatcatatttttttttttgtagctCGTGCATACGTTCGGTATGCACGA
CAAAAAAAGAAGATGGGGCACAGCCACACAGACACACATTTGGAGTTCGG
CCGCTGGGTAAAGCCCGGTGGCCAGTTGTATGGGTACTCCCATCATGGAA
GCcacaagaagaagaaaaactaggtaaacaaaatttttttaatatttttt
gtccTCGATGTTTATTTTGGTTGTTCACAAAACCAATTACTTACGGTGTT
TCTTTCAttattgtttctgacatcaccccttcaaatttgttttttcagcT
TTTACAGGACAATTATTCGTCCACCGGGCGCAATCCGTGGCCAACGCCAA
CACCGGCGATGTCGGGCTTGGCCATTGGGTCAATGCTGATGGGATGTTGC
CCCCACGTACGAAACTGGAAAGATGCTTCAATCAATAACGATCGTGGTCG
TGGGAGGGGTAGCTGTGGTGATGGGCGAGGTGGTGGTAGAGTTGGGCGTT
TGGTCAATTTGGCTTTTATGCCTCCATAATTTCAACCCTGTTCGTTTAGA
GAGTACCTAGGCTAGGTTTATTTTAGGCACTTCGCTaatgatatattttt
tcaatttccagaCACTAAACTCACAGTCATCATGTCTTTCGTAACAATCA
TTTTGTTCAACTTGGTCGTTGTGAGCTTAAGGACTCAtctaaaagaaaga
aagaagtctAAATCCAAACGGGAGAGACCAGCGATACCGTTGCGGGAGAT
CAAAACGTTGGACGAAAGCGCCATGTACCTAACGTATCTAACGGATGAAG
GGGTTCAGTCGGTCCTGCTACCAGATGAAGACAATAACATATGGATGCCG
AAGGAAGGATGGCCATCAAAACTGTACCTTAGCAAGCTTGGACATAAAAT
CTTGACTGAGGAACAAGTGAAACAAGAAGAATTCGAATCTGAAATAAAGA
GATTACGAGAGGAGAACAAGAAGATGAAAGAAGATATTGAAAAACTAAAG
TCGAAAGTTGATGAATTGTGGAAATTGAAAGGTAATATCCCCACCTTTCG
CAATTTCAAAAGCACATGTCATGACAAACGTATTCCCTCAAAAGAGATCA
ACTCAGCTCTCTTTATAATGACATCATAGTAATCATAGTAATCCTCAACA
GACAAGACTACATCAACAAAATCATGAACGAACACCTCAACGACGAAAAC
CAAACactgaaaacaaatttttgggAAACGACTAAAAGCTAGCGAAATTT
AATGGACGAGAAGAAGCTGGAAGAAGAAAATTTCGGCTAAAACCATAATT
cgctaaatttcgcgacttttggacttcgcgaaactttctgccttTAAATT
ATTTCAATATTATATTCTAAATTTAGTGGAGTGATAGAGTAATGGAGCTG
ACATCTAATTATATGAAGAAAATCGAAGAAAGAGAAGAGCTCCGTGCGGT
GGGGAAGAATCGTCCGACATCTGAATGCGCTCTGGTAATGATAACAGGCG
TGGAAAAAGCCGTTGTAAGGTTATCTTTTGTTTGGAAATACACCAGTTAA
CGACAAAGTTGAAATCGAAGATTATCGATCCATCAAAATGCGTACCACGA
ACGCTATTGTATCATCAAATATCGAGAAATGCACAATCCACCATTGACAA
CCAGAACCGAAAGTTCAATCTTGGGAATGGTCAGATATCGAGAAATGCAC
AATCTACCATTGACAACCAGAACCGAAAGTTCAATCTTGGGAATGGTCAG
TTACTTAACGACCCTATTCTTGCCGCTGATCAGCTTCTCCTAAGAGAATA
TTCTGATTCAGCATTATTTGACGCCAACCGCTACGATCCTGTATTCATCC
CACCTGTTTTACAATCCAACCAATACACAAAGAAGGACTCAAATTCTATT
gagtttttatcaaattttcaagtttctGTTTCCTCACTGGAGTCGTTTTA
CAGCCCGGTGCAGCTACTAAGTTGTgctatttcactttttttttcaagtg
gtTATTTTCGTCAGACCTTAGACTTATTGTCACTTGCTACAGTCTAGTGC
CACTAGCGGTTattgttttcaattatttatttatttatttatttatttat
aaaaccaaaattatcTATAATTTACTCTAATTTATTGCCCTTATTGTACG
TATATATGAAAGATATCAACTTTCAACTATTAAGAAGGACTCATCAGTGC
ATGTCAAAAAATCAGTCACTACACCAACTAAGAGATCCATTAATAAAGAT
TTCCGAAAAATCAAAGATTGAGAAGAATAGTCAACCactattttcaaatt
attctcTAAAATCAATCGTCAAGAAAATTATTAGTATTTTTATAGCGTAT
CTAATCTAAATTATGATTGTTCTTTTAGAATTGGCGCAGAAACAAGCCCA
CAAAGAAGCAAAGCAGGAGGAGGACCGTCAAAATGAGGCAATGGgtaagg
ctttttttaattgATTGACGACTTCACATATTTCATGCAAAGGAGTTTTT
GCATTATTTAAGTCACCAAATTGATACTTTGAAAGTTTTGCAAATACTTC
TACCAACTATTACCAATTAATCACCATTATAATAGGCCATATTTTAAGGA
ACATATTCGCTTGGTTTAGTTTTAGTGTGAGAGATTGTGAAGGAGAAGAA
ATTATGCTGTATTATGCGGAAATAAATAACGAAACAGCAATACGATTATT
TTTCAGCATTATGGTTCTCTGCTTACTCGGCGTCAAAAccaaccaacaac
aacaacaacaacaactacaATTATCACCAGCGCCACCAACGAGGAGGGCA
GAAACGAAAAATAGATAACGAGGAGGACAGGGACGTGAGGGAATTTGGAT
CGTGGGTGGTTCGGGGTGGGTTTTTCGAAAACTCGACAGAGAAAGTGGTG
GACGAGCAAAAAGgtatttgcattaatatcattcATTTATTCTATAcaat
tttctttcacttttaaaaGAGCCCTCGTTTATGGAAATCAAGAACATCGg
atctttttagaaatcttaCAGGGACGTGAGGGAATTTGGATTGTGGGTGG
TTCGGGGTGGGTTTTTCGAAAACTCGACAGAGAAAGTGGTG Run BLAST on NCBI protein sequence of TCONS_00048743-protein >TCONS_00048743-protein ID=TCONS_00048743-protein|Name=TCONS_00048743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MRSGNDNRRGKSRCKVIFCLEIHQLTTKLKSKIIDPSKCVPRTLLYHQIS
RNAQSTIDNQNRKFNLGNGQISRNAQSTIDNQNRKFNLGNGQLLNDPILA
ADQLLLREYSDSALFDANRYDPVFIPPVLQSNQYTKKDSNSIEFLSNFQV
SVSSLESFYSPVQLLSCAISLFFSSGYFRQTLDLLSLATV Run BLAST on NCBI transcript from alignment at scaffold_146:101987..105147- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048743 ID=TCONS_00048743|Name=TCONS_00048743|organism=Clytia hemisphaerica|type=transcript|length=3161bp|location=Sequence derived from alignment at scaffold_146:101987..105147- (Clytia hemisphaerica)
TACATCATATTTTTTTTTTTGTAGCTCGTGCATACGTTCGGTATGCACGA
CAAAAAAAGAAGATGGGGCACAGCCACACAGACACACATTTGGAGTTCGG
CCGCTGGGTAAAGCCCGGTGGCCAGTTGTATGGGTACTCCCATCATGGAA
GCCACAAGAAGAAGAAAAACTAGGTAAACAAAATTTTTTTAATATTTTTT
GTCCTCGATGTTTATTTTGGTTGTTCACAAAACCAATTACTTACGGTGTT
TCTTTCATTATTGTTTCTGACATCACCCCTTCAAATTTGTTTTTTCAGCT
TTTACAGGACAATTATTCGTCCACCGGGCGCAATCCGTGGCCAACGCCAA
CACCGGCGATGTCGGGCTTGGCCATTGGGTCAATGCTGATGGGATGTTGC
CCCCACGTACGAAACTGGAAAGATGCTTCAATCAATAACGATCGTGGTCG
TGGGAGGGGTAGCTGTGGTGATGGGCGAGGTGGTGGTAGAGTTGGGCGTT
TGGTCAATTTGGCTTTTATGCCTCCATAATTTCAACCCTGTTCGTTTAGA
GAGTACCTAGGCTAGGTTTATTTTAGGCACTTCGCTAATGATATATTTTT
TCAATTTCCAGACACTAAACTCACAGTCATCATGTCTTTCGTAACAATCA
TTTTGTTCAACTTGGTCGTTGTGAGCTTAAGGACTCATCTAAAAGAAAGA
AAGAAGTCTAAATCCAAACGGGAGAGACCAGCGATACCGTTGCGGGAGAT
CAAAACGTTGGACGAAAGCGCCATGTACCTAACGTATCTAACGGATGAAG
GGGTTCAGTCGGTCCTGCTACCAGATGAAGACAATAACATATGGATGCCG
AAGGAAGGATGGCCATCAAAACTGTACCTTAGCAAGCTTGGACATAAAAT
CTTGACTGANATGGATGCCGAAGGAAGGATGGCCATCAAAACTGTACCTT
AGCAAGCCTGGACATAAAATCTTGACTGAGGAACAAGTGAAACAAGAAGA
ATTCGAATCTGAAATAAAGAGATTACGAGAGGAGAACAAGAAGATGAAAG
AAGATATTGAAAAACTAAAGTCGAAAGTTGATGAATTGTGGAAATTGAAA
GGTAATATCCCCACCTTTCGCAATTTCAAAAGCACATGTCATGACAAACG
TATTCCCTCAAAAGAGATCAACTCAGCTCTCTTTATAATGACATCATAGT
AATCATAGTAATCCTCAACAGACAAGACTACATCAACAAAATCATGAACG
AACACCTCAACGACGAAAACCAAACACTGAAAACAAATTTTTGGGAAACG
ACTAAAAGCTAGCGAAATTTAATGGACGAGAAGAAGCTGGAAGAAGAAAA
TTTCGGCTAAAACCATAATTCGCTAAATTTCGCGACTTTTGGACTTCGCG
AAACTTTCTGCCTTTAAATTATTTCAATATTATATTCTAAATTTAGTGGA
GTGATAGAGTAATGGAGCTGACATCTAATTATATGAAGAAAATCGAAGAA
AGAGAAGAGCTCCGTGCGGTGGGGAAGAATCGTCCGACATCTGAATGCGC
TCTGGTAATGATAACAGGCGTGGAAAAAGCCGTTGTAAGGTTATCTTTTG
TTTGGAAATACACCAGTTAACGACAAAGTTGAAATCGAAGATTATCGATC
CATCAAAATGCGTACCACGAACGCTATTGTATCATCAAATATCGAGAAAT
GCACAATCCACCATTGACAACCAGAACCGAAAGTTCAATCTTGGGAATGG
TCAGATATCGAGAAATGCACAATCTACCATTGACAACCAGAACCGAAAGT
TCAATCTTGGGAATGGTCAGTTACTTAACGACCCTATTCTTGCCGCTGAT
CAGCTTCTCCTAAGAGAATATTCTGATTCAGCATTATTTGACGCCAACCG
CTACGATCCTGTATTCATCCCACCTGTTTTACAATCCAACCAATACACAA
AGAAGGACTCAAATTCTATTGAGTTTTTATCAAATTTTCAAGTTTCTGTT
TCCTCACTGGAGTCGTTTTACAGCCCGGTGCAGCTACTAAGTTGTGCTAT
TTCACTTTTTTTTTCAAGTGGTTATTTTCGTCAGACCTTAGACTTATTGT
CACTTGCTACAGTCTAGTGCCACTAGCGGTTATTGTTTTCAATTATTTAT
TTATTTATTTATTTATTTATAAAACCAAAATTATCTATAATTTACTCTAA
TTTATTGCCCTTATTGTACGTATATATGAAAGATATCAACTTTCAACTAT
TAAGAAGGACTCATCAGTGCATGTCAAAAAATCAGTCACTACACCAACTA
AGAGATCCATTAATAAAGATTTCCGAAAAATCAAAGATTGAGAAGAATAG
TCAACCACTATTTTCAAATTATTCTCTAAAATCAATCGTCAAGAAAATTA
TTAGTATTTTTATAGCGTATCTAATCTAAATTATGATTGTTCTTTTAGAA
TTGGCGCAGAAACAAGCCCACAAAGAAGCAAAGCAGGAGGAGGACCGTCA
AAATGAGGCAATGGGTAAGGCTTTTTTTAATTGATTGACGACTTCACATA
TTTCATGCAAAGGAGTTTTTGCATTATTTAAGTCACCAAATTGATACTTT
GAAAGTTTTGCAAATACTTCTACCAACTATTACCAATTAATCACCATTAT
AATAGGCCATATTTTAAGGAACATATTCGCTTGGTTTAGTTTTAGTGTGA
GAGATTGTGAAGGAGAAGAAATTATGCTGTATTATGCGGAAATAAATAAC
GAAACAGCAATACGATTATTTTTCAGCATTATGGTTCTCTGCTTACTCGG
CGTCAAAACCAACCAACAACAACAACAACAACAACTACAATTATCACCAG
CGCCACCAACGAGGAGGGCAGAAACGAAAAATAGATAACGAGGAGGACAG
GGACGTGAGGGAATTTGGATCGTGGGTGGTTCGGGGTGGGTTTTTCGAAA
ACTCGACAGAGAAAGTGGTGGACGAGCAAAAAGGTATTTGCATTAATATC
ATTCATTTATTCTATACAATTTTCTTTCACTTTTAAAAGAGCCCTCGTTT
ATGGAAATCAAGAACATCGGATCTTTTTAGAAATCTTACAGGGACGTGAG
GGAATTTGGATTGTGGGTGGTTCGGGGTGGGTTTTTCGAAAACTCGACAG
AGAAAGTGGTG Coding sequence (CDS) from alignment at scaffold_146:101987..105147- >TCONS_00048743 ID=TCONS_00048743|Name=TCONS_00048743|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_146:101987..105147- (Clytia hemisphaerica)
ATGCGCTCTGGTAATGATAACAGGCGTGGAAAAAGCCGTTGTAAGGTTAT
CTTTTGTTTGGAAATACACCAGTTAACGACAAAGTTGAAATCGAAGATTA
TCGATCCATCAAAATGCGTACCACGAACGCTATTGTATCATCAAATATCG
AGAAATGCACAATCCACCATTGACAACCAGAACCGAAAGTTCAATCTTGG
GAATGGTCAGATATCGAGAAATGCACAATCTACCATTGACAACCAGAACC
GAAAGTTCAATCTTGGGAATGGTCAGTTACTTAACGACCCTATTCTTGCC
GCTGATCAGCTTCTCCTAAGAGAATATTCTGATTCAGCATTATTTGACGC
CAACCGCTACGATCCTGTATTCATCCCACCTGTTTTACAATCCAACCAAT
ACACAAAGAAGGACTCAAATTCTATTGAGTTTTTATCAAATTTTCAAGTT
TCTGTTTCCTCACTGGAGTCGTTTTACAGCCCGGTGCAGCTACTAAGTTG
TGCTATTTCACTTTTTTTTTCAAGTGGTTATTTTCGTCAGACCTTAGACT
TATTGTCACTTGCTACAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048743-exon-scaffold_146-1575043694:104255..105147 | TCONS_00048743-exon-scaffold_146-1575043694:104255..105147 | Clytia hemisphaerica | exon |
| TCONS_00048743-exon-scaffold_146-1575043694:101987..104184 | TCONS_00048743-exon-scaffold_146-1575043694:101987..104184 | Clytia hemisphaerica | exon |
| TCONS_00048743-exon-scaffold_146-1510915933:104255..105147 | TCONS_00048743-exon-scaffold_146-1510915933:104255..105147 | Clytia hemisphaerica | exon |
| TCONS_00048743-exon-scaffold_146-1510915933:101987..104184 | TCONS_00048743-exon-scaffold_146-1510915933:101987..104184 | Clytia hemisphaerica | exon |
| TCONS_00048743-exon-scaffold_146-1491911889:104255..105147 | TCONS_00048743-exon-scaffold_146-1491911889:104255..105147 | Clytia hemisphaerica | exon |
| TCONS_00048743-exon-scaffold_146-1491911889:101987..104184 | TCONS_00048743-exon-scaffold_146-1491911889:101987..104184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:101987..105147 - |
Blast
The following BLAST results are available for this feature:
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