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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048729 ID=TCONS_00048729|Name=TCONS_00048729|organism=Clytia hemisphaerica|type=transcript|length=2156bp
TAGGAAAATGCTTCATTTCTACTTAATCCCTTCTATTTCTCCTGTCCTCA
GTCACAATCTGATAGTTCAAAAATCGCCTGATGAGTTTCATTATCTAATG
CACGACAAAATAGATGTAGACCTCGAATTGTTCAATTTGCCAGAGTTTTA
GTTTTCGATTCAGAGCGTCAACATGCTGCTTGCTCTTTGAGTTCGTGCGG
GGCTTTTGAAGAAAAAGGGCTGTCGTGACATGGAAATCATACATTAGCCT
TTGATTAACCGAGTGGTTTCTTTGATGTAGTTCTTTCTCCGATACACGAT
CTTTTCATAACATTCTTTCAGTTTGCAAGTTGCTTGGTTGTCATTGAGTG
ACCACATAGGAATTGTCGCTGTACCACGGCTTCTTGAGGTTGATCCGGTG
GCCGAGGTGGTGGTCAAACTGGACGTGTCCGCACTTTTTTAAGCTTATAC
TTGCGGCGCTGTTGTAAAGTTGCGTTTGTTTGGGTGGTTGTCAACTGTTG
GTCTTTCAATTTATTGCGCACGTCTATCAttgtgaattttaatttttgtt
gtaACTCCTCTCTCTACCTTCTCCCCGAGACTGTGGAGAAGTTCAGCCCG
TTTCTTTCGGCGATGGCGATTCCTCTGGGTGTTTTTCGACACTGTTCTTT
CCTCGTTATCAGACGAAGCCGACAGACTAAGTTCACGTGAATCCATTGTG
TTCTTATTTGAATACTTGTACTGAAACTATAAGAATACATTAAGAATATT
TAAGATTTGTGTAATCTTTGACACTTAGAGTTTCAGGCTGACCATCCCTA
TGAACCTTATCATGTGAACCCGAGATCGAGATCGGTGAGACCGCTCCCGA
ATCCGGCGCTCCCGATACGATCTCTCCCTCGGCGTTCATCTGTCATCTCG
CCTGTCACGATCACCGTCTTGCCTGTCACGTCCACCGTCTTGCCAAACTT
AATACAAAACGTTGAACGCAAATTCAGTAAGTAATATACAATAACTGCTT
CAAAGAAATGACATCAATTATCCAATTCCGCCGTCCTCGTCGATTTGTTT
ACGACTTACATCTCGACATTCTTTTGTGATTCATTATAACCAAAAATAGA
AGAAGATTAAAAAGATTTCTTGTTTCTCAGCTCCAaatttcaaatgtcaa
aaaaaaatttccaaaaactttttttgtttatttattttaactGATTCAGT
CCAATCTCCGTAAGCTAAAAACTGCCTTAGATACTGAGCGATTTCGACAC
CCGTTGTATCATTGCGTCCCCACTTTTCTTTCTTCCCAACCTGGACATCG
TGATTCATTGCACTTCGTTGAGATTCGCAACTATTAGTGATTAATTTTTG
CGTTCACCTGATGATGGaactttgatttgaaatttctaacaTGGTCAGAA
ACGTTGAGTACCGATCCTTGTTTTCTCCTGCTGTCATGACTTAAAAAAAC
GTCATTGCTGTACTCAATGCAAGAAAGTTGAGTGAAAAAGAGATGATTGT
AAGGTAGGGTTGGTAAAAAAGTTGATGGGGCGGTAAATAAACTATAAGAA
TCAGTATAACTTAGTTAAGGCCAGTGATGCAAAGACTTTAAAGGAATTTG
GTCGTCCAGTAACCAATAAAACGATACAAGGGAAGGGAAGAGCTGCCTAA
GACCACTGATAGAGTAATCTCTTGTTATGCAGGCATGGATGGATATGTGG
ACGATAGAAAGAACCAGTAGTTGTGATATCCTTTAGAGAagcaaaacaaa
ggaaattttctaaCTGGAATCAGCCTGcttgagaaattttttcgagAATT
CTCCATAACATACCCTCTCTTCTTTTTGAGGGTGGTGTGGAGATGTTATC
TCTTCAACATTTCAGAGCacgattttgcattttttgtttGGTTAAATCAA
ATTAAAGTTGGATTCTTCTTAGTTCTTGCCAGGTAATGGATGAAAGAAAG
TATCAAAGAGACCACAATTTACTCCTTCTGTCTTCTGTTGGACAGAAATA
GATCCGATAGTCAGCTAAGATGCAGGGGTTTTCAAAAGTGAGCAGATTTG
ATGTCTGATGTGCAAAGTCATacagacttttttataagcaaaggCAGAca
caaagcatccaggcatagcatATGCTtgttatatgcttatgaattgTTAC
CCAGAC Run BLAST on NCBI transcript from alignment at scaffold_146:127649..129804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048729 ID=TCONS_00048729|Name=TCONS_00048729|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at scaffold_146:127649..129804+ (Clytia hemisphaerica)
TAGGAAAATGCTTCATTTCTACTTAATCCCTTCTATTTCTCCTGTCCTCA
GTCACAATCTGATAGTTCAAAAATCGCCTGATGAGTTTCATTATCTAATG
CACGACAAAATAGATGTAGACCTCGAATTGTTCAATTTGCCAGAGTTTTA
GTTTTCGATTCAGAGCGTCAACATGCTGCTTGCTCTTTGAGTTCGTGCGG
GGCTTTTGAAGAAAAAGGGCTGTCGTGACATGGAAATCATACATTAGCCT
TTGATTAACCGAGTGGTTTCTTTGATGTAGTTCTTTCTCCGATACACGAT
CTTTTCATAACATTCTTTCAGTTTGCAAGTTGCTTGGTTGTCATTGAGTG
ACCACATAGGAATTGTCGCTGTACCACGGCTTCTTGAGGTTGATCCGGTG
GCCGAGGTGGTGGTCAAACTGGACGTGTCCGCACTTTTTTAAGCTTATAC
TTGCGGCGCTGTTGTAAAGTTGCGTTTGTTTGGGTGGTTGTCAACTGTTG
GTCTTTCAATTTATTGCGCACGTCTATCAttgtgaattttaatttttgtt
gtaACTCCTCTCTCTACCTTCTCCCCGAGACTGTGGAGAAGTTCAGCCCG
TTTCTTTCGGCGATGGCGATTCCTCTGGGTGTTTTTCGACACTGTTCTTT
CCTCGTTATCAGACGAAGCCGACAGACTAAGTTCACGTGAATCCATTGTG
TTCTTATTTGAATACTTGTACTGAAACTATAAGAATACATTAAGAATATT
TAAGATTTGTGTAATCTTTGACACTTAGAGTTTCAGGCTGACCATCCCTA
TGAACCTTATCATGTGAACCCGAGATCGAGATCGGTGAGACCGCTCCCGA
ATCCGGCGCTCCCGATACGATCTCTCCCTCGGCGTTCATCTGTCATCTCG
CCTGTCACGATCACCGTCTTGCCTGTCACGTCCACCGTCTTGCCAAACTT
AATACAAAACGTTGAACGCAAATTCAGTAAGTAATATACAATAACTGCTT
CAAAGAAATGACATCAATTATCCAATTCCGCCGTCCTCGTCGATTTGTTT
ACGACTTACATCTCGACATTCTTTTGTGATTCATTATAACCAAAAATAGA
AGAAGATTAAAAAGATTTCTTGTTTCTCAGCTCCAaatttcaaatgtcaa
aaaaaaatttccaaaaactttttttgtttatttattttaactGATTCAGT
CCAATCTCCGTAAGCTAAAAACTGCCTTAGATACTGAGCGATTTCGACAC
CCGTTGTATCATTGCGTCCCCACTTTTCTTTCTTCCCAACCTGGACATCG
TGATTCATTGCACTTCGTTGAGATTCGCAACTATTAGTGATTAATTTTTG
CGTTCACCTGATGATGGaactttgatttgaaatttctaacaTGGTCAGAA
ACGTTGAGTACCGATCCTTGTTTTCTCCTGCTGTCATGACTTAAAAAAAC
GTCATTGCTGTACTCAATGCAAGAAAGTTGAGTGAAAAAGAGATGATTGT
AAGGTAGGGTTGGTAAAAAAGTTGATGGGGCGGTAAATAAACTATAAGAA
TCAGTATAACTTAGTTAAGGCCAGTGATGCAAAGACTTTAAAGGAATTTG
GTCGTCCAGTAACCAATAAAACGATACAAGGGAAGGGAAGAGCTGCCTAA
GACCACTGATAGAGTAATCTCTTGTTATGCAGGCATGGATGGATATGTGG
ACGATAGAAAGAACCAGTAGTTGTGATATCCTTTAGAGAagcaaaacaaa
ggaaattttctaaCTGGAATCAGCCTGcttgagaaattttttcgagAATT
CTCCATAACATACCCTCTCTTCTTTTTGAGGGTGGTGTGGAGATGTTATC
TCTTCAACATTTCAGAGCacgattttgcattttttgtttGGTTAAATCAA
ATTAAAGTTGGATTCTTCTTAGTTCTTGCCAGGTAATGGATGAAAGAAAG
TATCAAAGAGACCACAATTTACTCCTTCTGTCTTCTGTTGGACAGAAATA
GATCCGATAGTCAGCTAAGATGCAGGGGTTTTCAAAAGTGAGCAGATTTG
ATGTCTGATGTGCAAAGTCATacagacttttttataagcaaaggCAGAca
caaagcatccaggcatagcatATGCTtgttatatgcttatgaattgTTAC
CCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048729-exon-scaffold_146-1491911889:127649..129804 | TCONS_00048729-exon-scaffold_146-1491911889:127649..129804 | Clytia hemisphaerica | exon |
| TCONS_00048729-exon-scaffold_146-1510915933:127649..129804 | TCONS_00048729-exon-scaffold_146-1510915933:127649..129804 | Clytia hemisphaerica | exon |
| TCONS_00048729-exon-scaffold_146-1575043694:127649..129804 | TCONS_00048729-exon-scaffold_146-1575043694:127649..129804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:127649..129804 + |
Blast
The following BLAST results are available for this feature:
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