TCONS_00048700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048700
Unique NameTCONS_00048700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048700 ID=TCONS_00048700|Name=TCONS_00048700|organism=Clytia hemisphaerica|type=transcript|length=234bp
NNTAGGTCTTGTTCCAactgaactgaaaaaatgcacCATAACACCAATTC
ACAAAGGAGGAAGCAGATCTCTGGCTGCCAACTACAGACCTGTTGCACTC
ACCTCACATGTGAtaaaaattttcgagaaaagaTTGAGAAATCATATTGT
AAATCACATGAACAACAATGAccttttcaatccaaaccaacaTGGTTTCA
GAAGTGGGAGATCCTGCCTTAGTCAGCTTCTCGN
Run BLAST on NCBI

transcript from alignment at scaffold_145:41052..41285

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048700 ID=TCONS_00048700|Name=TCONS_00048700|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at scaffold_145:41052..41285 (Clytia hemisphaerica)
NCGAGAAGCTGACTAAGGCAGGATCTCCCACTTCTGAAACCAtgttggtt
tggattgaaaaggTCATTGTTGTTCATGTGATTTACAATATGATTTCTCA
AtcttttctcgaaaatttttaTCACATGTGAGGTGAGTGCAACAGGTCTG
TAGTTGGCAGCCAGAGATCTGCTTCCTCCTTTGTGAATTGGTGTTATGgt
gcattttttcagttcagtTGGAACAAGACCTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030945XLOC_030945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048700-exon-scaffold_145-1491911889:41052..41285TCONS_00048700-exon-scaffold_145-1491911889:41052..41285Clytia hemisphaericaexon
TCONS_00048700-exon-scaffold_145-1510915933:41052..41285TCONS_00048700-exon-scaffold_145-1510915933:41052..41285Clytia hemisphaericaexon
TCONS_00048700-exon-scaffold_145-1575043694:41052..41285TCONS_00048700-exon-scaffold_145-1575043694:41052..41285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:41052..41285 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.65394	4.97442	0	7.09835	9.6301	22.4526	6.38333	15.6239	16.0386	19.4491	8.49444	9.51186	6.37505	7.39564	5.40604	3.41387	0	4.08804	5.68762	7.14926	0	2.88198	1.14261	0	7.80396	16.518	3.18004	9.69591	0.122882	0.477028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top