TCONS_00048676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048676
Unique NameTCONS_00048676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048676 ID=TCONS_00048676|Name=TCONS_00048676|organism=Clytia hemisphaerica|type=transcript|length=1403bp
tttattttgaaactttttcgaaagaaaaagtaGCAAATAACTTTTTACGC
CAATAACTATCATGCTCTTAAGTTTTCTTCTCAATATTTTACTATTATTT
GCCAAAGCTGACGGAGAACAATTATGGGAACCGAAAAATAGTCAGATTTC
AGTTCACAATGAATCAGCTTTGGTGATAGTCAACCAGATGAGATTTCGAG
ATTTAAAAACCGGATATATGTTGGGCCAATTTGGCCTTATGCATGTGGTC
AACTCAATGCCTGAATGTGCAGCTGCTTGTATGGATACGGATGGTTGTGT
CAATTGGGCATTTTCAGATGGCAATCAATGTCATACTTATACATTTGCGT
TACGCACAAGACCAAGGACCACATATTGGGGATTTTGGGGTAGGACATTT
GAGATAAAGAATCCATGCACTGAAAGTTTGAATTTATGCGAACACGGCAG
TATTTGTTCACCAGATCGTAACACCAAAACGTACCAATGCATCAACTGCC
CTCCCCCCTATACTGGAAAACATTGCAATGAAACTACAGaattaaTCGCT
CCCACAGTTTTACATGATGATATTTTGTCGGGTCGCAACAAGTCATGTCG
CACTTTATGGTACCATTTCGATATACCGAATGCATGGATCTCTTACTTCA
CACATCCTTGGAACGATGaacgaaaaatcaaaatcagatGCTATAgATAT
ACCAGCATGATAACTACGGTTATGAATGACAACCAGCCCGTTACAGATTT
GACAGCTGACCACCTAGTGGACGGGCTTGACTTGACGGTACCTAATTTTA
GAGCAATGACATCCTTTATGCAAGCCTATGAAAAATTAGTACAGTTCGAT
ACACTGGTTTTTCAATGTTATCGGCAAAATATGACTAATATTAATTTAAA
AAGCGTATACTTTCATCTctcaattttaaattattttattaacGCAACTA
ATACACGACCAAAATTCGCTAGTGAGTGGTTGCTGACAGTTGACAACAAA
CCCTGGAATGGGGCAACGTCTGATGGTTTTATATCCAACAGCAATGTCGA
TGTCGAAGAGAGATTCTATAAGAATTTATTCAAAGCTAGTGATGGACTTG
AAATTACTTTCTCAGATAATCTTGGCAAATGTTTATCTATTGAAGATGAT
TGGCATTCCTATACTGTGCTaattcaataaaactgattcaTAACTTATCG
ATCATTTTTTTTCGATCCAgcattaatttttatttcatttttattgtatt
tttattgatttttatacATTTGCACAATATTTTTTAGCGATTtacacaaa
attttttttcggggtATCAATGAAAGTTTCCGGGATTTTATAACTTAGAG
GTAGAGTTGAacacgtctttttttataagaacatccaaaagttttgaagc
ctt
Run BLAST on NCBI

protein sequence of TCONS_00048676-protein

>TCONS_00048676-protein ID=TCONS_00048676-protein|Name=TCONS_00048676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MLLSFLLNILLLFAKADGEQLWEPKNSQISVHNESALVIVNQMRFRDLKT
GYMLGQFGLMHVVNSMPECAAACMDTDGCVNWAFSDGNQCHTYTFALRTR
PRTTYWGFWGRTFEIKNPCTESLNLCEHGSICSPDRNTKTYQCINCPPPY
TGKHCNETTELIAPTVLHDDILSGRNKSCRTLWYHFDIPNAWISYFTHPW
NDERKIKIRCYRYTSMITTVMNDNQPVTDLTADHLVDGLDLTVPNFRAMT
SFMQAYEKLVQFDTLVFQCYRQNMTNINLKSVYFHLSILNYFINATNTRP
KFASEWLLTVDNKPWNGATSDGFISNSNVDVEERFYKNLFKASDGLEITF
SDNLGKCLSIEDDWHSYTVLIQ
Run BLAST on NCBI

transcript from alignment at scaffold_145:206676..213687-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048676 ID=TCONS_00048676|Name=TCONS_00048676|organism=Clytia hemisphaerica|type=transcript|length=7012bp|location=Sequence derived from alignment at scaffold_145:206676..213687- (Clytia hemisphaerica)
TTTATTTTGAAACTTTTTCGAAAGAAAAAGTAGCAAATAACTTTTTACGC
CAATAACTATCATGCTCTTAAGTTTTCTTCTCAATATTTTACTATTATTT
GCCAAAGCTGACGGAGAACAATTATGGGAACCGAAAAATAGTCAGATTTC
AGTTCACAATGAATCAGCTTTGGTGATAGTCAACCAGATGAGATTTCGAG
ATTTAAAAACCGGATATATGTTGGGCCAATTTGGCCTTATGCATGTGGTC
AACTCAATGCCTGAATGTGCAGCTGCTTGTATGGATACGGATGGTTGTGT
CAATTGGGCATTTTCAGATGGCAATCAATGTCATACTTATACATTTGCGT
TACGCACAAGACCAAGGACCACATATTGGGGATTTTGGGGTAGGACATTT
GAGATAAAGGTATGAAGTTTTGGGATATTTTTATGTTAAACCATGGGATC
ATTAAACCCTGAAAGGATAATTTTGATAAGAATAAAATCACCAAGCTTTC
AAAAAGACTAGAGAATGCTCAGGTGGTAGTACATGGCTTTGAAGGTATGG
TTGTATTAATACACTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGT
TTTCAAACAGATTTTATTACTATGAAATTATACATTTAAACCAATTTAAA
TTCCTAAAAGGCAACATTAACTCTAAAACAAAAGTTCTTGAAATTCAAAA
TGTCTCATGAGGTGTAAACAACACAATTATCGTTGTGAATAAGTAATTTT
ATAGCAATAAAATCTGTTTGAAAACGAGGACAACAATAAATTTATGCATC
TCGAGAAGAGTGTATTAATCTTTTGAGATAAAAGTGAGTGTTTTATTTTT
TTTTCTTTGCTGCATTTACCTGGGATTCGCAATCTCTGCTGCATTCATAT
TCATTCACGATCAATGTTTTATAATTATCCACTGCCACCATAACATATTG
CGATATGGATGTATTCTGGAAATTCTCTAGCTTTTTTTTAACTTCTTTTT
AGAATCCATGCACTGAAAGTTTGAATTTATGCGAACACGGCAGTATTTGT
TCACCAGATCGTAACACCAAAACGTACCAATGCATCAACTGCCCTCCCCC
CTATACTGGAAAACATTGCAATGAAACTACAGGTATGAAGCGCCCAGCTG
GCACACAACGTTGTTTCAACGTTTATCAAACAACGTTTATCTAACGTTCA
CAACGTCCATTTAACGTTAAATGGACGTTGAAACTACAGGTATGAAATGT
AAACCTGTTTAAAAACATACCTCGCACATGACATAATCCGAAGGACTTTG
CCGGGGCGGACTGACCCTGACGGCCGACAGGGACGTGCCGCTGGAGTTTG
ATATGTGGACCCTGTCAGAGAAAAATTTTCGGAAAATTGAGACTCTGTTA
GAACGAAAAATCTAAAATTTTCTTATTTTCACCATGAAAAGTGGCAAAAA
TCACTGAAAAGTGACTGAAAGTAGACGAAAAAAACATTTCCCACCCTGAA
AATTGTCTGAAATAACTAGAAGTCAACCCTGTCAGATACACTTCTTTAAA
ATTAGTAGATCTGGGACTCTGTCAGATATCTTCAGAGCCTAAAGAAGTGA
CCCTGACCAGCGACAGGTCCCCGTACCCTATTTTGCCTAGGTGTCCCCCG
GATCTTCCCCAGAAAATAGGACTACTAAAGAAACTATTATCGTGAGTGTA
TCAATAGGCTTTTATATAATAATATATATATTATGTAAATGATTTTTAGG
CCAAAGAACAAAATTTCCGGGTTAGAAATTGTAATCATAACATAGACTAT
TAGAAACAAACCTTTCTTTGAAGGAATTCTTTATCATCAGAAACAATGCA
TGGTTTTGTGTTTCGGCCACCATCAGCTTTTTTATATTTACGTTATGGTG
CTCCTATACTAGCTGCAGTCTTGTAGAGGTCTGCCATTTAGATTAATCAG
TAAAGCCAATAAAACAGGGATTATATGGAACGAGGTTGCTTGAAGTTGAT
GAAAAAATCTTTCTTTACAAAAACTTTTTTCAAGATCTGGACGAGGAACT
ACCCTACCAACAATACGATATAATTCGAGAATACTTCTCGAAATCCAAAT
TGTGAAATGGACGATACTAAAGCTAATTTGCCTATTCTTTTCATTTTATT
TTCAGAATTAATCGCTCCCACAGTTTTACATGATGGTAAGGAATTGTTTT
GGAAGTGTTGACTTCAATTTTGTTTGAAAAAATCTTTTCTTTCCTTGTGT
GTCGGGCTCTTTTGTCTTTTGATCATAAATATATCATCGATCATCGTCCC
CAAACATAGAGCTGAGTAAAAGCCAGTTGATAAACGAGTACTGCACGAAA
TGCTCTCCGTTGTCTTTAATTTTGACGAATTTGAATCAATATCAAATAGT
GGAGTAGGCTAGCACATAAAAAACGGACGATACTTCAAATTGTGATAGAG
CTCTGATATTTTGCACAGAGGTTCTACCGTGAAAAGCACAGGTCGAAATC
ATATATCGACGCTGTGCCGACGAATCGAGATTCTATTCAGCGCGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GAGAATCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAGTGAT
ATTTCCATAATTAATAGTTTAGTAATTACTGTTATACATTTGGGGATCAT
GTAAAAGATTTCTTTCGAAAGAGACTCACTTCAATTACACTTGGAGGTTT
CTGGGGAATTCGTAAATAGTAAACTGTATACTGATACAGTCTGCTAGACA
TTAATAAGGTAATATTTGCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTCTACAGTGATTAGATTGACACATGCGCGATAAAATTTCTATTAT
TGGTCTTCAGAGGTTGATATATTCTTTGAAAACTTAACCTCTGATACTCA
GGGTACAGAGGTTCCTCATGAAGTAAAAAAAATAAAAATTAAGAAGGAAA
CTCATAAAAATGATGTTTCTGTTGATGTCAGCACAATCCTATGTCGGCTA
TCCCGGGAAAAATAGCGAGAAATTACGGAAAAGGTAGAAGAATCTTAGTG
CAGCAAAGTGAATCTTATGCAGAACGACGGTAGAGCTTTTCGTATAGCTC
AAAATAATTTATGAAAAGGCCTATTGCGACATCTGTTGTCCATCAATTTG
TTTCTAACCTGATAACAGATGGTCATAATTTTTTACGCGCATGGTAAACC
TTAGACGATCCTATCGCACATTATCATTGAAAAAGGTAATAATTCAGGAA
GTGGGATAAATTTGAAAACGAGCTTAGTTCGGGGCGGAGTAAATAATAAA
TTTGACGTCAAACAGAAAGGTTGTGCTCTTCGTTTATTTTTCAAAATGAA
GAATTTTCAATAAAATTTTAAAAATATGGAAAAAATAGCCAAATTTCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAAATTATATTTTAAAAAGATTTTTT
GTACAAGAACGGTTTAGAGGCCCTTGTGCCTCAACTGTAATCACCTTACA
AATTGTAAAGTAGCGTTGACTTTTATCAGCCTTTGTTGCTACCTGTTCGT
CAACTTGAAATAAACTATTACATACATACATACATGGCGGAGGTGTTTAC
AGTTTGTTCCAAACTTTTTCTCGGAAATCGCCCTGCCGCCCTGACTCTGC
GCATATATATAGTGAAGATATGTAATATCTGTCATTTTAGAAAAAGAAAA
GTATTGATATATAAATAACTCAAACTGATAAAAACGAAAAAAGTTAAGAA
TATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCAAATGAAGATAGAAGAAAAGTAATAGTGGAGAAACAATGAATTGCAA
AAAACTTTTTTGATAAACACACTTCCGTAAGTTCATCAAAATACATACAA
AATTGGGACAAATACAAAAGCAAACATATATATTTTCCCGCGTTCACTGA
CCCTCTAAACGGACGATAGCATCGTCTAGGTAAACCTCTAAAGAAACAAG
AATCTCATTTCGTGCCGCGATGTCAAAAATTAAATTTTTCTGATACAGCG
CCTTTTTTAAACACAATCACACAACTTTGTTGTCATTCCCAGTCCTATTA
GACGAGCACGGTCCTATCAAAATTGAAATTGCATATTCGTCAGTTCGTTT
ATTATCATACATCCCTTTAGTGCTTCAGGGTGGAACGCAGAAAAAAACGG
CGATCTGATTTCAGGTTATTTGTTTCTTATTACACTAGATATTTTGTCGG
GTCGCAACAAGTCATGTCGCACTTTATGGTACCATTTCGATATACCGAAT
GCATGGATCTCTTACTTCACACATCCTTGGAACGATGAACGAAAAATCAA
AATCAGATGCTATAGTAAGTCACCCAGCTGGGACACAACGTTGCTTCAAC
GTTTATTTTTAACGTTCACAACGTCCATAGATGAACGTTGAAACAACGTT
GTGTGCCAGCTGGGCACCACTTTTTGACTTTACTGATGAATGTTGGTACA
ATCGAAAATCGTACTTTTCGTGAGCGAGTGAACTAAGGGGCTGGGTTTGA
GTTTGTTAGTACAATATTTAATATTTAAATTTAGGATGGGTTGGGAGACT
TCCAGGCTATATTCTGAGCCTTATTGGACTATTTTTGAACTTTTGGATCC
TCAGATTCTAAGGTCCTAAGTCAGAGTTAAAACTCTACCCTTCGAACCTA
CTTTAGAGCACTTACAAATCGATTGTGATTTCAAAACTTCCTGGGGAGTA
ACCCTTTTTTCTCAAATATTATGACCTTGATTGTAACTCACAGCTGTCGA
TATTTACGATCTGCAAAAGTTTCGTAGATTGTAATGTTTTTTTTCTCTTT
TAAGGATATACCAGCATGATAACTACGGTTATGAATGACAACCAGCCCGT
TACAGATTTGACAGCTGACCACCTAGTGGACGGGCTTGACTTGACGGTAC
CTAATTTTAGAGCAATGACATCCTTTATGCAAGCCTATGAAAAATTAGTA
CAGTTCGATACACTGGTTTTTCAATGTTATCGGCAAAATATGACTAATAT
TAATTTAAAAAGCGTATACTTTCATCTCTCAATTTTAAATTATTTTATTA
ACGCAACTAATACACGACCAAAATTCGCTAGTGAGTGGTTGCTGACAGTT
GACAACAAACCCTGGAATGGGGCAACGTCTGATGGTTTTATATCCAACAG
CAATGTCGATGTCGAAGAGAGATTCTATAAGAATTTATTCAAAGCTAGTG
ATGGACTTGAAATTACTTTCTCAGATAATCTTGGCAAATGTTTATCTATT
GAAGATGATTGGCATTCCTATACTGTGCTAATTCAATAAAACTGATTCAT
AACTTATCGATCATTTTTTTTCGATCCAGCATTAATTTTTATTTCATTTT
TATTGTATTTTTATTGATTTTTATACATTTGCACAATATTTTTTAGCGAT
TTACACAAAATTTTTTTTCGGGGTATCAATGAAAGTTTCCGGGATTTTAT
AACTTAGAGGTAGAGTTGAACACGTCTTTTTTTATAAGAACATCCAAAAG
TTTTGAAGCCTT

Coding sequence (CDS) from alignment at scaffold_145:206676..213687-

>TCONS_00048676 ID=TCONS_00048676|Name=TCONS_00048676|organism=Clytia hemisphaerica|type=CDS|length=5595bp|location=Sequence derived from alignment at scaffold_145:206676..213687- (Clytia hemisphaerica)
GATATACCAGCATGATAACTACGGTTATGAATGACAACCAGCCCGTTACA
GATTTGACAGCTGACCACCTAGTGGACGGGCTTGACTTGACGGTACCTAA
TTTTAGAGCAATGACATCCTTTATGCAAGCCTATGAAAAATTAGTACAGT
TCGATACACTGGTTTTTCAATGTTATCGGCAAAATATGACTAATATTAAT
TTAAAAAGCGTATACTTTCATCTCTCAATTTTAAATTATTTTATTAACGC
AACTAATACACGACCAAAATTCGCTAGTGAGTGGTTGCTGACAGTTGACA
ACAAACCCTGGAATGGGGCAACGTCTGATGGTTTTATATCCAACAGCAAT
GTCGATGTCGAAGAGAGATTCTATAAGAATTTATTCAAAGCTAGTGATGG
ACTTGAAATTACTTTCTCAGATAATCTTGGCAAATGTTTATCTATTGAAG
ATGATTGGCATTCCTATACTGTGCTAATTCAATAAATATTTTGTCGGGTC
GCAACAAGTCATGTCGCACTTTATGGTACCATTTCGATATACCGAATGCA
TGGATCTCTTACTTCACACATCCTTGGAACGATGAACGAAAAATCAAAAT
CAGATGCTATAAATTAATCGCTCCCACAGTTTTACATGATGAATCCATGC
ACTGAAAGTTTGAATTTATGCGAACACGGCAGTATTTGTTCACCAGATCG
TAACACCAAAACGTACCAATGCATCAACTGCCCTCCCCCCTATACTGGAA
AACATTGCAATGAAACTACAGATGCTCTTAAGTTTTCTTCTCAATATTTT
ACTATTATTTGCCAAAGCTGACGGAGAACAATTATGGGAACCGAAAAATA
GTCAGATTTCAGTTCACAATGAATCAGCTTTGGTGATAGTCAACCAGATG
AGATTTCGAGATTTAAAAACCGGATATATGTTGGGCCAATTTGGCCTTAT
GCATGTGGTCAACTCAATGCCTGAATGTGCAGCTGCTTGTATGGATACGG
ATGGTTGTGTCAATTGGGCATTTTCAGATGGCAATCAATGTCATACTTAT
ACATTTGCGTTACGCACAAGACCAAGGACCACATATTGGGGATTTTGGGG
TAGGACATTTGAGATAAAGGATATACCAGCATGATAACTACGGTTATGAA
TGACAACCAGCCCGTTACAGATTTGACAGCTGACCACCTAGTGGACGGGC
TTGACTTGACGGTACCTAATTTTAGAGCAATGACATCCTTTATGCAAGCC
TATGAAAAATTAGTACAGTTCGATACACTGGTTTTTCAATGTTATCGGCA
AAATATGACTAATATTAATTTAAAAAGCGTATACTTTCATCTCTCAATTT
TAAATTATTTTATTAACGCAACTAATACACGACCAAAATTCGCTAGTGAG
TGGTTGCTGACAGTTGACAACAAACCCTGGAATGGGGCAACGTCTGATGG
TTTTATATCCAACAGCAATGTCGATGTCGAAGAGAGATTCTATAAGAATT
TATTCAAAGCTAGTGATGGACTTGAAATTACTTTCTCAGATAATCTTGGC
AAATGTTTATCTATTGAAGATGATTGGCATTCCTATACTGTGCTAATTCA
ATAAATATTTTGTCGGGTCGCAACAAGTCATGTCGCACTTTATGGTACCA
TTTCGATATACCGAATGCATGGATCTCTTACTTCACACATCCTTGGAACG
ATGAACGAAAAATCAAAATCAGATGCTATAAATTAATCGCTCCCACAGTT
TTACATGATGAATCCATGCACTGAAAGTTTGAATTTATGCGAACACGGCA
GTATTTGTTCACCAGATCGTAACACCAAAACGTACCAATGCATCAACTGC
CCTCCCCCCTATACTGGAAAACATTGCAATGAAACTACAGATGCTCTTAA
GTTTTCTTCTCAATATTTTACTATTATTTGCCAAAGCTGACGGAGAACAA
TTATGGGAACCGAAAAATAGTCAGATTTCAGTTCACAATGAATCAGCTTT
GGTGATAGTCAACCAGATGAGATTTCGAGATTTAAAAACCGGATATATGT
TGGGCCAATTTGGCCTTATGCATGTGGTCAACTCAATGCCTGAATGTGCA
GCTGCTTGTATGGATACGGATGGTTGTGTCAATTGGGCATTTTCAGATGG
CAATCAATGTCATACTTATACATTTGCGTTACGCACAAGACCAAGGACCA
CATATTGGGGATTTTGGGGTAGGACATTTGAGATAAAGGATATACCAGCA
TGATAACTACGGTTATGAATGACAACCAGCCCGTTACAGATTTGACAGCT
GACCACCTAGTGGACGGGCTTGACTTGACGGTACCTAATTTTAGAGCAAT
GACATCCTTTATGCAAGCCTATGAAAAATTAGTACAGTTCGATACACTGG
TTTTTCAATGTTATCGGCAAAATATGACTAATATTAATTTAAAAAGCGTA
TACTTTCATCTCTCAATTTTAAATTATTTTATTAACGCAACTAATACACG
ACCAAAATTCGCTAGTGAGTGGTTGCTGACAGTTGACAACAAACCCTGGA
ATGGGGCAACGTCTGATGGTTTTATATCCAACAGCAATGTCGATGTCGAA
GAGAGATTCTATAAGAATTTATTCAAAGCTAGTGATGGACTTGAAATTAC
TTTCTCAGATAATCTTGGCAAATGTTTATCTATTGAAGATGATTGGCATT
CCTATACTGTGCTAATTCAATAAATATTTTGTCGGGTCGCAACAAGTCAT
GTCGCACTTTATGGTACCATTTCGATATACCGAATGCATGGATCTCTTAC
TTCACACATCCTTGGAACGATGAACGAAAAATCAAAATCAGATGCTATAA
ATTAATCGCTCCCACAGTTTTACATGATGAATCCATGCACTGAAAGTTTG
AATTTATGCGAACACGGCAGTATTTGTTCACCAGATCGTAACACCAAAAC
GTACCAATGCATCAACTGCCCTCCCCCCTATACTGGAAAACATTGCAATG
AAACTACAGATGCTCTTAAGTTTTCTTCTCAATATTTTACTATTATTTGC
CAAAGCTGACGGAGAACAATTATGGGAACCGAAAAATAGTCAGATTTCAG
TTCACAATGAATCAGCTTTGGTGATAGTCAACCAGATGAGATTTCGAGAT
TTAAAAACCGGATATATGTTGGGCCAATTTGGCCTTATGCATGTGGTCAA
CTCAATGCCTGAATGTGCAGCTGCTTGTATGGATACGGATGGTTGTGTCA
ATTGGGCATTTTCAGATGGCAATCAATGTCATACTTATACATTTGCGTTA
CGCACAAGACCAAGGACCACATATTGGGGATTTTGGGGTAGGACATTTGA
GATAAAGGATATACCAGCATGATAACTACGGTTATGAATGACAACCAGCC
CGTTACAGATTTGACAGCTGACCACCTAGTGGACGGGCTTGACTTGACGG
TACCTAATTTTAGAGCAATGACATCCTTTATGCAAGCCTATGAAAAATTA
GTACAGTTCGATACACTGGTTTTTCAATGTTATCGGCAAAATATGACTAA
TATTAATTTAAAAAGCGTATACTTTCATCTCTCAATTTTAAATTATTTTA
TTAACGCAACTAATACACGACCAAAATTCGCTAGTGAGTGGTTGCTGACA
GTTGACAACAAACCCTGGAATGGGGCAACGTCTGATGGTTTTATATCCAA
CAGCAATGTCGATGTCGAAGAGAGATTCTATAAGAATTTATTCAAAGCTA
GTGATGGACTTGAAATTACTTTCTCAGATAATCTTGGCAAATGTTTATCT
ATTGAAGATGATTGGCATTCCTATACTGTGCTAATTCAATAAATATTTTG
TCGGGTCGCAACAAGTCATGTCGCACTTTATGGTACCATTTCGATATACC
GAATGCATGGATCTCTTACTTCACACATCCTTGGAACGATGAACGAAAAA
TCAAAATCAGATGCTATAAATTAATCGCTCCCACAGTTTTACATGATGAA
TCCATGCACTGAAAGTTTGAATTTATGCGAACACGGCAGTATTTGTTCAC
CAGATCGTAACACCAAAACGTACCAATGCATCAACTGCCCTCCCCCCTAT
ACTGGAAAACATTGCAATGAAACTACAGATGCTCTTAAGTTTTCTTCTCA
ATATTTTACTATTATTTGCCAAAGCTGACGGAGAACAATTATGGGAACCG
AAAAATAGTCAGATTTCAGTTCACAATGAATCAGCTTTGGTGATAGTCAA
CCAGATGAGATTTCGAGATTTAAAAACCGGATATATGTTGGGCCAATTTG
GCCTTATGCATGTGGTCAACTCAATGCCTGAATGTGCAGCTGCTTGTATG
GATACGGATGGTTGTGTCAATTGGGCATTTTCAGATGGCAATCAATGTCA
TACTTATACATTTGCGTTACGCACAAGACCAAGGACCACATATTGGGGAT
TTTGGGGTAGGACATTTGAGATAAAGGATATACCAGCATGATAACTACGG
TTATGAATGACAACCAGCCCGTTACAGATTTGACAGCTGACCACCTAGTG
GACGGGCTTGACTTGACGGTACCTAATTTTAGAGCAATGACATCCTTTAT
GCAAGCCTATGAAAAATTAGTACAGTTCGATACACTGGTTTTTCAATGTT
ATCGGCAAAATATGACTAATATTAATTTAAAAAGCGTATACTTTCATCTC
TCAATTTTAAATTATTTTATTAACGCAACTAATACACGACCAAAATTCGC
TAGTGAGTGGTTGCTGACAGTTGACAACAAACCCTGGAATGGGGCAACGT
CTGATGGTTTTATATCCAACAGCAATGTCGATGTCGAAGAGAGATTCTAT
AAGAATTTATTCAAAGCTAGTGATGGACTTGAAATTACTTTCTCAGATAA
TCTTGGCAAATGTTTATCTATTGAAGATGATTGGCATTCCTATACTGTGC
TAATTCAATAAATATTTTGTCGGGTCGCAACAAGTCATGTCGCACTTTAT
GGTACCATTTCGATATACCGAATGCATGGATCTCTTACTTCACACATCCT
TGGAACGATGAACGAAAAATCAAAATCAGATGCTATAAATTAATCGCTCC
CACAGTTTTACATGATGAATCCATGCACTGAAAGTTTGAATTTATGCGAA
CACGGCAGTATTTGTTCACCAGATCGTAACACCAAAACGTACCAATGCAT
CAACTGCCCTCCCCCCTATACTGGAAAACATTGCAATGAAACTACAGATG
CTCTTAAGTTTTCTTCTCAATATTTTACTATTATTTGCCAAAGCTGACGG
AGAACAATTATGGGAACCGAAAAATAGTCAGATTTCAGTTCACAATGAAT
CAGCTTTGGTGATAGTCAACCAGATGAGATTTCGAGATTTAAAAACCGGA
TATATGTTGGGCCAATTTGGCCTTATGCATGTGGTCAACTCAATGCCTGA
ATGTGCAGCTGCTTGTATGGATACGGATGGTTGTGTCAATTGGGCATTTT
CAGATGGCAATCAATGTCATACTTATACATTTGCGTTACGCACAAGACCA
AGGACCACATATTGGGGATTTTGGGGTAGGACATTTGAGATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030928XLOC_030928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048676-exon-scaffold_145-1575043694:213279..213687TCONS_00048676-exon-scaffold_145-1575043694:213279..213687Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1575043694:212556..212685TCONS_00048676-exon-scaffold_145-1575043694:212556..212685Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1575043694:211503..211532TCONS_00048676-exon-scaffold_145-1575043694:211503..211532Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1575043694:207874..207999TCONS_00048676-exon-scaffold_145-1575043694:207874..207999Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1575043694:206676..207383TCONS_00048676-exon-scaffold_145-1575043694:206676..207383Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1510915933:213279..213687TCONS_00048676-exon-scaffold_145-1510915933:213279..213687Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1510915933:212556..212685TCONS_00048676-exon-scaffold_145-1510915933:212556..212685Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1510915933:211503..211532TCONS_00048676-exon-scaffold_145-1510915933:211503..211532Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1510915933:207874..207999TCONS_00048676-exon-scaffold_145-1510915933:207874..207999Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1510915933:206676..207383TCONS_00048676-exon-scaffold_145-1510915933:206676..207383Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1491911889:213279..213687TCONS_00048676-exon-scaffold_145-1491911889:213279..213687Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1491911889:212556..212685TCONS_00048676-exon-scaffold_145-1491911889:212556..212685Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1491911889:211503..211532TCONS_00048676-exon-scaffold_145-1491911889:211503..211532Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1491911889:207874..207999TCONS_00048676-exon-scaffold_145-1491911889:207874..207999Clytia hemisphaericaexon
TCONS_00048676-exon-scaffold_145-1491911889:206676..207383TCONS_00048676-exon-scaffold_145-1491911889:206676..207383Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048676-proteinTCONS_00048676-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:206676..213687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0891401	0.0579504	0	0.0658288	0.206042	0.140941	0.0382012	0.107291	0.150566	0.372334	0.044914	0.025096	6.81758	6.38586	1.36834	0.932506	0.39704	0.127145	7.43767	7.42711	0.655135	0.760546	1.02059	1.8164	1.62653	2.28393	0.226096	0.0869639	0.065959	0.0336009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top