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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048672 ID=TCONS_00048672|Name=TCONS_00048672|organism=Clytia hemisphaerica|type=transcript|length=2464bp
AATATTATATCGATTCGTATGTCAAATtataatttcattgaaaatctttt
ggcaTTTATTTTCATAATAGTACAAGAATGAAATAGTAAAATACGTAAAT
TGAATTAATGGAGTTTtgattttggaaagaaaaatatattattGGATTGT
TGTAAGTTGTACGTACTGGAAATTATATCATGAAATTATTTGGGGTCTGG
TGACGAGAAGAAAACTGGGAAAGATGATCAAGTTTGCTATAATGTATGAG
TGGGCCTGAAGACGGATTTCCTTATAACTCCATAATCCGCGAGACCGATT
TGAGAGAGCTCAAAGAGACTGACCTACTAGACTACGAAGACGATTTCCAA
GAAGCGAATTTGACTTTATATGATTTCATCGAcgaagaaagtatgaatca
attaaataaaaacaaagatatgCCCTATCTACCGAGGGAGAAAGAAGCGA
AGGCAGACAAGCTATCAGACAATCGTAACATGGAAAGCTCTACACTGGAT
ATCAAAGAGTTAAGGTCAACCGATATTTCGAAAATTGCAGCGATAAAGGA
AACGGATTTATGTAGTAATGATGATGATTCGAGTACAGACGTCGAGCAAC
GTTCCCAAGAGGAAAGCGTGTCTCTGTCCTCAGGTGATACCCTTGGACAT
AATGATGAGGATTCAGAGCTATGGAATTTAGACAATGCAGAAAGTGTCAG
CTTAAGCACTGACAGTGGTATTATAAATGAAGATTGCTCTAAATTGCATT
TAGATCTTGATTACAATCACTTCAATTCTGCAGCCATAAAATTCCAAGAT
TTAGAAAGTGATTTTTTTGATACCGACTGTGAGGCCATGGATAAATCACC
AACCGATGATTGTTTTGAAACAAATCGTGGTGAGACCAAGGATATTGTTC
GTTTTCAAGATATAGagagtgatttttttgaaacagaTTGTGAGGGGGTG
GACACCAACACAAATGATAATACGGTGAAATTTCAAGATATCGAGAGCGA
CTTCTTCGATGAAGACGATGAGATCTCACCTTCTAGTCTAGctctgaaaa
acaaaacaaaaacaactgtGGCCGGGTCATCTAAAAAAGAACCATGCGAA
ATtgatcaacaaaaacaaattctgACTCGATTAACCAGTGCTAAGGATAA
GCGAGCAACGATGACGAATAGTTTGTTACGTACCACGATTGAAGAACTGG
AACGTGCGTTGAGTAATAGTAATACTTTGTTGATTAAGCGAGACAAAAAG
ATTCAAGACCTAAGGAAACATAACAATGAGTTGAAGAAAAGTTTGTCAGA
GGAGCTTGAAAACAGCGCACAATTAAAACTACTACTTCTTGAAAAAGAGG
CTGTGGTAAGTGAAAAAGAGGCTAAAATTGCGTCATATCAAACTGAATGT
GAACGTTTGAATCAAGAAATTACAGACTTGAGGCTATATCAATTGAACAA
TATGGAAGACTTTTCGATAAGTTGCGATCCTTCTAATCTCGATAATTCAG
TCGAAACTGACTTATTGGGTGATCAAGACATTACGTCATCACcaaatgta
aagaaaaaatCGTTGAATAGAAACCAGTCTTCTTGTTCACGACAAGAGAC
GCCGATTTGTAAAAGTAAGCGAATGAGTAGCCCGGACACTACTTCACAAC
AAAAGACTAGCCCGTTTACAACCTCGACGACACCGAAAAGTACCATAGCT
TCTAATATAAAAACACGACCGGGAGCTTTATCAAAATCAAGCCCAGCAAG
CCCTATGTCCCCACAGGGTGGGAAAGTTGGGAATAACCCAGACAACGTGA
GTAGTACGGAACTTCACGCACGCCTACAAATGAAATTCATGAGGGATGCT
TTCTTTTATTACATGATTGGTTTTCATTCAGACGAACAAATAAATGCTAT
TTTGGCTATATTAGATTACGGCGATAAAAGACAAGATTTTGTTCTTGAAG
CTCACAAACTGAAAAAGAATGGTAAGAAATTTAATGTGAGTAAAGTTTCG
ACACGTGGGTTGACTTTTGTACAAGATATTCAACCTAAATGATAAAAGTA
CAgtcaaaacaacgttgtatgccaACTCGGGACATTTCTTGCTACTtgaa
cttttattttgttatgtaaaatatttttcttgaattatAATTTATGATAA
ACTTTCTTGATgcattttcgaaaaagaaagtTTCTGTAGctcaaaacacc
aaaaaaaattatgtagaCTGCAATCAACCTNGATgcattttcgaaaaaca
aagTTTCTGTAACTCAAAACACCAAAAGAAATTATGTAGACTGCAATCAA
CCTCGTTCCCTAcatattatcagctttttgatgtttattgatagcgctag
ataataccccggctagatattctctggcgtccatcagtaacataaataaa
gcctggaatacacggggacgaggttggacTGCAATAATCAGCCAGAATCA
ATAGCCTTTCCTCA Run BLAST on NCBI transcript from alignment at scaffold_145:189781..195705- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048672 ID=TCONS_00048672|Name=TCONS_00048672|organism=Clytia hemisphaerica|type=transcript|length=5925bp|location=Sequence derived from alignment at scaffold_145:189781..195705- (Clytia hemisphaerica)
AATATTATATCGATTCGTATGTCAAATTATAATTTCATTGAAAATCTTTT
GGCATTTATTTTCATAATAGTACAAGAATGAAATAGTAAAATACGTAAAT
TGAATTAATGGAGTTTTGATTTTGGAAAGAAAAATATATTATTGGATTGT
TGTAAGTTGTACGTACTGGAAATTATATCATGAAATTATTTGGGGTCTGG
TGACGAGAAGAAAACTGGGAAAGATGATCAAGTTTGCTATAATGTGTACG
TAAATTTCGTATTACTTCCACGACCTTGCTATATTCACGATGACTTATAT
AAATTTCGACTATTTTAGACAACCTCCCTATCATGATATACAGATCAGAT
ATTGACATGTTTTAATGACAATCATATCTAAATCAATCATAACATCACAG
AACCTCAAGCGTTTAAGGTCAGATGAGGACCAAGAGAGTTTACTGATTAT
ACACCCCTGTATCATGAAAAACAAAAAAGGAAAGAAATTTACCGTACATC
GTTCCTTCATTTGAACACCCCTGTGCTGAGACCCCAGCCCCACTGGAAAA
TCTAGCAAAAATTTCGTCTCCGGTGGGAAAATACCCTGAAATTTCAGCCC
CACTGGGAAATTGACTTTGATTTCATCCCCATTTGAAATTCAATGTTTAA
AAATTCCTCTCAAAACCCATCCCACTGGATTTTTTAACCTTGGAACAATA
GAGTTTCTATATTCCGACTGGGATTTCAATAGGAGTTTTTATCCCCACTG
AAAAAAGAAGTTCCACCGGGGCTGTTGGTGTAGTTGAAATGACCGAGATT
GAAACAGGGATGTATGCATAACTTATTTATGTTGTCACCATCATCAGTAA
AATAAAATCACAAAAGCCTTTTTTTATCGATTTGACTTGCTACATGATCA
GCAGGTAGCCCACGTAGTTTTGTAAAATTAGTTTAAATATTTTGTCGAAA
GCATTTGATCACTATGGTCATAAAATCAATTACTTTGATAAATAGTCTTT
TTTATTCTACTAGTAATTTCCTTTGGTTTTATGCTTGAACTTCCTTATAT
AACAGAAACTCTAAATAACAGCTAATAGTACACATTCCGCTCAGTTAAAG
GCTAAATACTAAATGTACCACTGTTCTTATACAAAACCCCCGAAGGTACT
AGGTTTGCGAGGTGACGGGTATGTCAGAGCCAAAGTTCGAAAACCGATCC
TTTCAGAGACTATTTTTTCCACCCGACACTCGTTTTGCCCAACTACTTAC
CCTGGGATAAAAACAATGACTGTATCAACGAACCATCCTTAATGAATGAG
ACAGGGGTGTCATAGAAAGGATGACGTTAGATTAACGCTCAAACAACTTG
ACGTGCCACCTGGATCCGCCTGGAACAAAAGAAACACAGACGAATTCCTG
AACAAGAACTTATTGTACACTGTTACACATTAGTTAGATTTTCTTTCAAC
TGAAACTACTGAACTATATCAAAAACATGATTACGTTCCACGAATTTTCT
TCTTCTATGTCAATGATTAAATGCTAAATACGAGCGCTTAAGCACAAATT
GAACATCTCTGTTGAATGAGACAGACAGAATTGAATTAAATTAATCATAT
CATTAGCAAAGTGAGATTAGCTGAAAGCTCTGAAAACACACCTTTTCTCT
CAAAGTCAACTACTTAGATGAGAGTCTCTATTTTAATTATCAAGCAGAGT
TCTCGCTGACGAGTAGAGAGTTGGAGGTTATAAGTTTGTTTTGAAGATAT
AACTTTTTTGTTTTGTATTTAATCAGAACGAATTATAAAAGCTAGTCATG
AAAACAATCTTCGATGGCTCACCTTGGTGACTCTTAGAGAGAGAGAAAAT
TGTGTAAAAAATGATATGAGGAGAACTATATATCAGAGTTATGTCCACTA
TCTCTCTTCTATTTTACATCGCTCTTTTATAAGCGTCATATTTGATATAA
AACATGAAAATATATGATATTAAAAATTAAAGATATGATTTTTTAAAGAA
AATAGAAGGAACTTTTTAAAGAAGTGGTGAATAATTCGTTGTGAGGGAGT
TGAAATTTGTGAGAGGTGAACATCAAGAAAGGTTGTGATTTTGATGAGGA
AATTATAATATTTTGCTTGGCATAAAACATACAAGGAATAATTCAATTTT
AAGTGGAAAAGGTAGAGTTCTTCAAAATTATTTGAGTATGAAATATACTT
TTCTTGGAACTAGAAAAACCTTTTAAAAATTGTTTGGGTACTGTTAAAAG
TTGTATCTTTATTAGTAAATTGTAGTATTTGGATAGGTATTCAAGCTTGA
AATTAATAACGATCTACTAATGAAGATCAATTCCTTAACTGTAAACAAAC
ATGAACATGAAGGTTTCTTTTTTTTAGAAAGCAGCTTTAATTTGTATTTG
TTAGTGTTTGAAACAAACTATGCTCAAAGAATATGTTTGGATGGAAACAG
CCATCAGTAGTGATTTATCTTTTAACCTTTGTGTTTTCAATTTCTTTTAT
TCCAATACAATACTCTTCAGTTCTTGCTAAAACTATAAAAGTGTAAGAGT
TGAATATTTTGGCTGAGGGATTAGTGCAACTCAGTTTTTGGGATTCTGAA
ATAGAGTATTCGTTTGAGGCTTGTAATTTTTACCGTTTTTGGGCATTCTT
GTGATGAAACACTAGTGAAGGTACAACCAAAATTTATGTTTTGTACGAGA
ATTTTCTTCTTCGATAAAGTCTTGATGACTCTTTCGAAAATCATCTGCTA
AGAGAGGTTTCCCTGTTGTTTCTTTTGGAAAAATTTCTTGAAAATTAAAT
AACAAAAGAAGTTTTCATAATATTTTTTCCTTTGTGAATTTTTTGAGGAT
TATAATATTTTCAGGGGAAGAGATTATAATCTCTAGCGAGTTCGTTTAAA
AACGGAAATTTTGAAAAAATTTTTGTGTAAAACTTTTGACTAACATATTT
CAGAGTCTTTTAACATCTCCTTCTCACAGACCCGGTAGGATTTTTTCAGC
CAGTGGGGATAAAAGTAACGGACTGAAACTCGATGGGGATTGATATTCGG
AAATGACATTCCCATATTTCCCATATTTTCTTATGAATGGGGATTCGAAT
TCCATTGTTTTCAAGTCAGAAGATTCAGTGGGGATGGAAAAAAGCATCGT
ATTTTGCAGTGAGGATTGGTTTATTTGGATATTCTCTGTAGGGACAAAAA
TTTGAGTATTATTTTCCACTGGGGACGATAATTTGACCAATTTTTCCAGT
GAGAAGGGGTCCCAGTGGGTTTGTGAGAAAGGGGTGTATTTTACAATGAT
AATCCAAGTGGTGAGGGGGTCCAAATGGCCACTTGATTAAAAAACGACCG
TACGTGCAGCCTAAAATTAGGGCTTTGAAATCGAACCCTTAAAAATTAGA
GTAAATTTGGGCGAAAAATCGACCCTTACAGTGCATTTTCTTTATTTTCT
TGAAAACTTTTGACCATTTTAAGGCAGAGTATGGTCAGATTCTCTAAATT
TTACACCCTTTTACACTTTTTCTCATCTTTTCTCATTTCGACTCTTATAG
TTAACTTTGGGCAGTCAAAACATGTGACTACTCAAAAAAATTTACGTGTT
TTTGTTCCCAAGTTTTGCAGATAATGGCGGGAACTGGAATTCTGAATTCT
GGGACAAGTCTCGTTAGAACCGTTTCATAACCATTTTCTTTTCTTTTTTC
TCCTAGATGAGTGGGCCTGAAGACGGATTTCCTTATAACTCCATAATCCG
CGAGACCGATTTGAGAGAGCTCAAAGAGACTGACCTACTAGACTACGAAG
ACGATTTCCAAGAAGCGAATTTGACTTTATATGATTTCATCGACGAAGAA
AGTATGAATCAATTAAATAAAAACAAAGATATGCCCTATCTACCGAGGGA
GAAAGAAGCGAAGGCAGACAAGCTATCAGACAATCGTAACATGGAAAGCT
CTACACTGGATATCAAAGAGTTAAGGTCAACCGATATTTCGAAAATTGCA
GCGATAAAGGAAACGGATTTATGTAGTAATGATGATGATTCGAGTACAGA
CGTCGAGCAACGTTCCCAAGAGGAAAGCGTGTCTCTGTCCTCAGGTGATA
CCCTTGGACATAATGATGAGGATTCAGAGCTATGGAATTTAGACAATGCA
GAAAGTGTCAGCTTAAGCACTGACAGTGGTATTATAAATGAAGATTGCTC
TAAATTGCATTTAGATCTTGATTACAATCACTTCAATTCTGCAGCCATAA
AATTCCAAGATTTAGAAAGTGATTTTTTTGATACCGACTGTGAGGCCATG
GATAAATCACCAACCGATGATTGTTTTGAAACAAATCGTGGTGAGACCAA
GGATATTGTTCGTTTTCAAGATATAGAGAGTGATTTTTTTGAAACAGATT
GTGAGGGGGTGGACACCAACACAAATGATAATACGGTGAAATTTCAAGAT
ATCGAGAGCGACTTCTTCGATGAAGACGATGAGATCTCACCTTCTAGTCT
AGCTCTGAAAAACAAAACAAAAACAACTGTGGCCGGGTCATCTAAAAAAG
AACCATGCGAAATTGATCAACAAAAACAAATTCTGACTCGATTAACCAGT
GCTAAGGATAAGCGAGCAACGATGACGAATAGTTTGTTACGTACCACGAT
TGAAGAACTGGAACGTGCGTTGAGTAATAGTAATACTTTGTTGATTAAGC
GAGACAAAAAGATTCAAGACCTAAGGAAACATAACAATGAGTTGAAGAAA
AGTTTGTCAGAGGAGCTTGAAAACAGCGCACAATTAAAACTACTACTTCT
TGAAAAAGAGGCTGTGGTAAGTGAAAAAGAGGCTAAAATTGCGTCATATC
AAACTGAATGTGAACGTTTGAATCAAGAAATTACAGACTTGAGGCTATAT
CAATTGAACAATATGGAAGACTTTTCGATAAGTTGCGATCCTTCTAATCT
CGATAATTCAGTCGAAACTGACTTATTGGGTGATCAAGACATTACGTCAT
CACCAAATGTAAAGAAAAAATCGTTGAATAGAAACCAGTCTTCTTGTTCA
CGACAAGAGACGCCGATTTGTAAAAGTAAGCGAATGAGTAGCCCGGACAC
TACTTCACAACAAAAGACTAGCCCGTTTACAACCTCGACGACACCGAAAA
GTACCATAGCTTCTAATATAAAAACACGACCGGGAGCTTTATCAAAATCA
AGCCCAGCAAGCCCTATGTCCCCACAGGGTGGGAAAGTTGGGAATAACCC
AGACAACGTGAGTAGTACGGAACTTCACGCACGCCTACAAATGAAATTCA
TGAGGGATGCTTTCTTTTATTACATGATTGGTTTTCATTCAGACGAACAA
ATAAATGCTATTTTGGCTATATTAGATTACGGCGATAAAAGACAAGATTT
TGTTCTTGAAGCTCACAAACTGAAAAAGAATGGTAAGAAATTTAATGTGA
GTAAAGTTTCGACACGTGGGTTGACTTTTGTACAAGATATTCAACCTAAA
TGATAAAAGTACAGTCAAAACAACGTTGTATGCCAACTCGGGACATTTCT
TGCTACTTGAACTTTTATTTTGTTATGTAAAATATTTTTCTTGAATTATA
ATTTATGATAAACTTTCTTGATGCATTTTCGAAAAAGAAAGTTTCTGTAG
CTCAAAACACCAAAAAAAATTATGTAGACTGCAATCAACCTNGATGCATT
TTCGAAAAACAAAGTTTCTGTAACTCAAAACACCAAAAGAAATTATGTAG
ACTGCAATCAACCTCGTTCCCTACATATTATCAGCTTTTTGATGTTTATT
GATAGCGCTAGATAATACCCCGGCTAGATATTCTCTGGCGTCCATCAGTA
ACATAAATAAAGCCTGGAATACACGGGGACGAGGTTGGACTGCAATAATC
AGCCAGAATCAATAGCCTTTCCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048672-exon-scaffold_145-1575043694:195461..195705 | TCONS_00048672-exon-scaffold_145-1575043694:195461..195705 | Clytia hemisphaerica | exon |
| TCONS_00048672-exon-scaffold_145-1575043694:189781..191999 | TCONS_00048672-exon-scaffold_145-1575043694:189781..191999 | Clytia hemisphaerica | exon |
| TCONS_00048672-exon-scaffold_145-1510915933:195461..195705 | TCONS_00048672-exon-scaffold_145-1510915933:195461..195705 | Clytia hemisphaerica | exon |
| TCONS_00048672-exon-scaffold_145-1510915933:189781..191999 | TCONS_00048672-exon-scaffold_145-1510915933:189781..191999 | Clytia hemisphaerica | exon |
| TCONS_00048672-exon-scaffold_145-1491911889:195461..195705 | TCONS_00048672-exon-scaffold_145-1491911889:195461..195705 | Clytia hemisphaerica | exon |
| TCONS_00048672-exon-scaffold_145-1491911889:189781..191999 | TCONS_00048672-exon-scaffold_145-1491911889:189781..191999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:189781..195705 - |
Blast
The following BLAST results are available for this feature:
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