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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048670 ID=TCONS_00048670|Name=TCONS_00048670|organism=Clytia hemisphaerica|type=transcript|length=2268bp
TGTAATTTTTACCGTTTTTGGGCATTCTTGTGATGAAACACTAGTGAAGA
TGAGTGGGCCTGAAGACGGATTTCCTTATAACTCCATAATCCGCGAGACC
GATTTGAGAGAGCTCAAAGAGACTGACCTACTAGACTACGAAGACGATTT
CCAAGAAGCGAATTTGACTTTATATGATTTCATCGAcgaagaaagtatga
atcaattaaataaaaacaaagatatgCCCTATCTACCGAGGGAGAAAGAA
GCGAAGGCAGACAAGCTATCAGACAATCGTAACATGGAAAGCTCTACACT
GGATATCAAAGAGTTAAGGTCAACCGATATTTCGAAAATTGCAGCGATAA
AGGAAACGGATTTATGTAGTAATGATGATGATTCGAGTACAGACGTCGAG
CAACGTTCCCAAGAGGAAAGCGTGTCTCTGTCCTCAGGTGATACCCTTGG
ACATAATGATGAGGATTCAGAGCTATGGAATTTAGACAATGCAGAAAGTG
TCAGCTTAAGCACTGACAGTGGTATTATAAATGAAGATTGCTCTAAATTG
CATTTAGATCTTGATTACAATCACTTCAATTCTGCAGCCATAAAATTCCA
AGATTTAGAAAGTGATTTTTTTGATACCGACTGTGAGGCCATGGATAAAT
CACCAACCGATGATTGTTTTGAAACAAATCGTGGTGAGACCAAGGATATT
GTTCGTTTTCAAGATATAGagagtgatttttttgaaacagaTTGTGAGGG
GGTGGACACCAACACAAATGATAATACGGTGAAATTTCAAGATATCGAGA
GCGACTTCTTCGATGAAGACGATGAGATCTCACCTTCTAGTCTAGctctg
aaaaacaaaacaaaaacaactgtGGCCGGGTCATCTAAAAAAGAACCATG
CGAAATtgatcaacaaaaacaaattctgACTCGATTAACCAGTGCTAAGG
ATAAGCGAGCAACGATGACGAATAGTTTGTTACGTACCACGATTGAAGAA
CTGGAACGTGCGTTGAGTAATAGTAATACTTTGTTGATTAAGCGAGACAA
AAAGATTCAAGACCTAAGGAAACATAACAATGAGTTGAAGAAAAGTTTGT
CAGAGGAGCTTGAAAACAGCGCACAATTAAAACTACTACTTCTTGAAAAA
GAGGCTGTGGTAAGTGAAAAAGAGGCTAAAATTGCGTCATATCAAACTGA
ATGTGAACGTTTGAATCAAGAAATTACAGACTTGAGGCTATATCAATTGA
ACAATATGGAAGACTTTTCGATAAGTTGCGATCCTTCTAATCTCGATAAT
TCAGTCGAAACTGACTTATTGGGTGATCAAGACATTACGTCATCACcaaa
tgtaaagaaaaaatCGTTGAATAGAAACCAGTCTTCTTGTTCACGACAAG
AGACGCCGATTTGTAAAAGTAAGCGAATGAGTAGCCCGGACACTACTTCA
CAACAAAAGACTAGCCCGTTTACAACCTCGACGACACCGAAAAGTACCAT
AGCTTCTAATATAAAAACACGACCGGGAGCTTTATCAAAATCAAGCCCAG
CAAGCCCTATGTCCCCACAGGGTGGGAAAGTTGGGAATAACCCAGACAAC
GTGAGTAGTACGGAACTTCACGCACGCCTACAAATGAAATTCATGAGGGA
TGCTTTCTTTTATTACATGATTGGTTTTCATTCAGACGAACAAATAAATG
CTATTTTGGCTATATTAGATTACGGCGATAAAAGACAAGATTTTGTTCTT
GAAGCTCACAAACTGAAAAAGAATGGTAAGAAATTTAATGTGAGTAAAGT
TTCGACACGTGGGTTGACTTTTGTACAAGATATTCAACCTAAATGATAAA
AGTACAgtcaaaacaacgttgtatgccaACTCGGGACATTTCTTGCTACT
tgaacttttattttgttatgtaaaatatttttcttgaattatAATTTATG
ATAAACTTTCTTGATgcattttcgaaaaagaaagtTTCTGTAGctcaaaa
caccaaaaaaaattatgtagaCTGCAATCAACCTNGATgcattttcgaaa
aacaaagTTTCTGTAACTCAAAACACCAAAAGAAATTATGTAGACTGCAA
TCAACCTCGTTCCCTAcatattatcagctttttgatgtttattgatagcg
ctagataataccccggctagatattctctggcgtccatcagtaacataaa
taaagcctggaatacacggggacgaggttggacTGCAATAATCAGCCAGA
ATCAATAGCCTTTCCTCA Run BLAST on NCBI transcript from alignment at scaffold_145:189781..193084- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048670 ID=TCONS_00048670|Name=TCONS_00048670|organism=Clytia hemisphaerica|type=transcript|length=3304bp|location=Sequence derived from alignment at scaffold_145:189781..193084- (Clytia hemisphaerica)
TGTAATTTTTACCGTTTTTGGGCATTCTTGTGATGAAACACTAGTGAAGG
TACAACCAAAATTTATGTTTTGTACGAGAATTTTCTTCTTCGATAAAGTC
TTGATGACTCTTTCGAAAATCATCTGCTAAGAGAGGTTTCCCTGTTGTTT
CTTTTGGAAAAATTTCTTGAAAATTAAATAACAAAAGAAGTTTTCATAAT
ATTTTTTCCTTTGTGAATTTTTTGAGGATTATAATATTTTCAGGGGAAGA
GATTATAATCTCTAGCGAGTTCGTTTAAAAACGGAAATTTTGAAAAAATT
TTTGTGTAAAACTTTTGACTAACATATTTCAGAGTCTTTTAACATCTCCT
TCTCACAGACCCGGTAGGATTTTTTCAGCCAGTGGGGATAAAAGTAACGG
ACTGAAACTCGATGGGGATTGATATTCGGAAATGACATTCCCATATTTCC
CATATTTTCTTATGAATGGGGATTCGAATTCCATTGTTTTCAAGTCAGAA
GATTCAGTGGGGATGGAAAAAAGCATCGTATTTTGCAGTGAGGATTGGTT
TATTTGGATATTCTCTGTAGGGACAAAAATTTGAGTATTATTTTCCACTG
GGGACGATAATTTGACCAATTTTTCCAGTGAGAAGGGGTCCCAGTGGGTT
TGTGAGAAAGGGGTGTATTTTACAATGATAATCCAAGTGGTGAGGGGGTC
CAAATGGCCACTTGATTAAAAAACGACCGTACGTGCAGCCTAAAATTAGG
GCTTTGAAATCGAACCCTTAAAAATTAGAGTAAATTTGGGCGAAAAATCG
ACCCTTACAGTGCATTTTCTTTATTTTCTTGAAAACTTTTGACCATTTTA
AGGCAGAGTATGGTCAGATTCTCTAAATTTTACACCCTTTTACACTTTTT
CTCATCTTTTCTCATTTCGACTCTTATAGTTAACTTTGGGCAGTCAAAAC
ATGTGACTACTCAAAAAAATTTACGTGTTTTTGTTCCCAAGTTTTGCAGA
TAATGGCGGGAACTGGAATTCTGAATTCTGGGACAAGTCTCGTTAGAACC
GTTTCATAACCATTTTCTTTTCTTTTTTCTCCTAGATGAGTGGGCCTGAA
GACGGATTTCCTTATAACTCCATAATCCGCGAGACCGATTTGAGAGAGCT
CAAAGAGACTGACCTACTAGACTACGAAGACGATTTCCAAGAAGCGAATT
TGACTTTATATGATTTCATCGACGAAGAAAGTATGAATCAATTAAATAAA
AACAAAGATATGCCCTATCTACCGAGGGAGAAAGAAGCGAAGGCAGACAA
GCTATCAGACAATCGTAACATGGAAAGCTCTACACTGGATATCAAAGAGT
TAAGGTCAACCGATATTTCGAAAATTGCAGCGATAAAGGAAACGGATTTA
TGTAGTAATGATGATGATTCGAGTACAGACGTCGAGCAACGTTCCCAAGA
GGAAAGCGTGTCTCTGTCCTCAGGTGATACCCTTGGACATAATGATGAGG
ATTCAGAGCTATGGAATTTAGACAATGCAGAAAGTGTCAGCTTAAGCACT
GACAGTGGTATTATAAATGAAGATTGCTCTAAATTGCATTTAGATCTTGA
TTACAATCACTTCAATTCTGCAGCCATAAAATTCCAAGATTTAGAAAGTG
ATTTTTTTGATACCGACTGTGAGGCCATGGATAAATCACCAACCGATGAT
TGTTTTGAAACAAATCGTGGTGAGACCAAGGATATTGTTCGTTTTCAAGA
TATAGAGAGTGATTTTTTTGAAACAGATTGTGAGGGGGTGGACACCAACA
CAAATGATAATACGGTGAAATTTCAAGATATCGAGAGCGACTTCTTCGAT
GAAGACGATGAGATCTCACCTTCTAGTCTAGCTCTGAAAAACAAAACAAA
AACAACTGTGGCCGGGTCATCTAAAAAAGAACCATGCGAAATTGATCAAC
AAAAACAAATTCTGACTCGATTAACCAGTGCTAAGGATAAGCGAGCAACG
ATGACGAATAGTTTGTTACGTACCACGATTGAAGAACTGGAACGTGCGTT
GAGTAATAGTAATACTTTGTTGATTAAGCGAGACAAAAAGATTCAAGACC
TAAGGAAACATAACAATGAGTTGAAGAAAAGTTTGTCAGAGGAGCTTGAA
AACAGCGCACAATTAAAACTACTACTTCTTGAAAAAGAGGCTGTGGTAAG
TGAAAAAGAGGCTAAAATTGCGTCATATCAAACTGAATGTGAACGTTTGA
ATCAAGAAATTACAGACTTGAGGCTATATCAATTGAACAATATGGAAGAC
TTTTCGATAAGTTGCGATCCTTCTAATCTCGATAATTCAGTCGAAACTGA
CTTATTGGGTGATCAAGACATTACGTCATCACCAAATGTAAAGAAAAAAT
CGTTGAATAGAAACCAGTCTTCTTGTTCACGACAAGAGACGCCGATTTGT
AAAAGTAAGCGAATGAGTAGCCCGGACACTACTTCACAACAAAAGACTAG
CCCGTTTACAACCTCGACGACACCGAAAAGTACCATAGCTTCTAATATAA
AAACACGACCGGGAGCTTTATCAAAATCAAGCCCAGCAAGCCCTATGTCC
CCACAGGGTGGGAAAGTTGGGAATAACCCAGACAACGTGAGTAGTACGGA
ACTTCACGCACGCCTACAAATGAAATTCATGAGGGATGCTTTCTTTTATT
ACATGATTGGTTTTCATTCAGACGAACAAATAAATGCTATTTTGGCTATA
TTAGATTACGGCGATAAAAGACAAGATTTTGTTCTTGAAGCTCACAAACT
GAAAAAGAATGGTAAGAAATTTAATGTGAGTAAAGTTTCGACACGTGGGT
TGACTTTTGTACAAGATATTCAACCTAAATGATAAAAGTACAGTCAAAAC
AACGTTGTATGCCAACTCGGGACATTTCTTGCTACTTGAACTTTTATTTT
GTTATGTAAAATATTTTTCTTGAATTATAATTTATGATAAACTTTCTTGA
TGCATTTTCGAAAAAGAAAGTTTCTGTAGCTCAAAACACCAAAAAAAATT
ATGTAGACTGCAATCAACCTNGATGCATTTTCGAAAAACAAAGTTTCTGT
AACTCAAAACACCAAAAGAAATTATGTAGACTGCAATCAACCTCGTTCCC
TACATATTATCAGCTTTTTGATGTTTATTGATAGCGCTAGATAATACCCC
GGCTAGATATTCTCTGGCGTCCATCAGTAACATAAATAAAGCCTGGAATA
CACGGGGACGAGGTTGGACTGCAATAATCAGCCAGAATCAATAGCCTTTC
CTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048670-exon-scaffold_145-1575043694:193036..193084 | TCONS_00048670-exon-scaffold_145-1575043694:193036..193084 | Clytia hemisphaerica | exon |
| TCONS_00048670-exon-scaffold_145-1575043694:189781..191999 | TCONS_00048670-exon-scaffold_145-1575043694:189781..191999 | Clytia hemisphaerica | exon |
| TCONS_00048670-exon-scaffold_145-1510915933:193036..193084 | TCONS_00048670-exon-scaffold_145-1510915933:193036..193084 | Clytia hemisphaerica | exon |
| TCONS_00048670-exon-scaffold_145-1510915933:189781..191999 | TCONS_00048670-exon-scaffold_145-1510915933:189781..191999 | Clytia hemisphaerica | exon |
| TCONS_00048670-exon-scaffold_145-1491911889:193036..193084 | TCONS_00048670-exon-scaffold_145-1491911889:193036..193084 | Clytia hemisphaerica | exon |
| TCONS_00048670-exon-scaffold_145-1491911889:189781..191999 | TCONS_00048670-exon-scaffold_145-1491911889:189781..191999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:189781..193084 - |
Blast
The following BLAST results are available for this feature:
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