TCONS_00048668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048668
Unique NameTCONS_00048668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048668 ID=TCONS_00048668|Name=TCONS_00048668|organism=Clytia hemisphaerica|type=transcript|length=703bp
atcattcctctccgataggaaattggcccgctcctttagagctttagcgt
gggcggccgccaatccgccatcggattATCCAGATAATCAAAAAGCCTAC
TCCGAATCGTCCGAATACACCGGCGGTGCTGTGCTGCGAATAGCACTGTC
GTTGCTCAACGGCTCAAATAATCTTAGAATTTTCTAACAAAGCTTTGCCT
ACCATTTTGATAAGAATAAAGGGGCCTCGGTCGACCCTATTTCAGCACAC
ACGAGCCAAATTCATTCCTTTTCAGCCGTGGCAAGACGAAGACACACGTT
CAACCAAAGACAATTTCTGGTTGTTTATACATCGTTAAAATGGCTCCAGT
CAAGAAGAAGTCCAATGAGAGCATCAACTCTCGACTTGCTCTTGTAATGA
AGAGTGGCAAATACACTCTAGGATACAGATCTACTTTGAAAACTCTTCGa
caaggaaaatcaaaattggTCATCATTGGCAGCAACACTCCACAATTGAG
GAAGAGCGAGATCGAATACTACGCTATGTTGTCCAAGACTGGTGTCCATC
ATTACACAGGAAACAACATCGAATTGGGAACAGCTTGTGGTAAATACTTC
CGAGTTTCAGTATTGAGCATCACAGATCCAGGAGATTCAGACATCATTAG
ATCTATGCCTTCTGAAGAGACGAAATAAATTGTACAAATTGCCACAAACt
tat
Run BLAST on NCBI

protein sequence of TCONS_00048668-protein

>TCONS_00048668-protein ID=TCONS_00048668-protein|Name=TCONS_00048668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MAPVKKKSNESINSRLALVMKSGKYTLGYRSTLKTLRQGKSKLVIIGSNT
PQLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDS
DIIRSMPSEETK
Run BLAST on NCBI

transcript from alignment at scaffold_145:108558..110936-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048668 ID=TCONS_00048668|Name=TCONS_00048668|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_145:108558..110936- (Clytia hemisphaerica)
ATCATTCCTCTCCGATAGGAAATTGGCCCGCTCCTTTAGAGCTTTAGCGT
GGGCGGCCGCCAATCCGCCATCGGATTATCCAGATAATCAAAAAGCCTAC
TCCGAATCGTCCGAATACACCGGCGGTGCTGTGCTGCGAATAGCACTGTC
GTTGCTCAACGGCTCAAATAATCTTAGAATTTTCTAACAAAGCTTTGCCT
ACCATTTTGATAAGAATAAAGGGGCCTCGGTCGACCCTATTTCAGCACAC
ACGAGCCAAATTCATTCCTTTTCAGCCGTGGCAAGACGAAGACACACGTT
CAACCAAAGACAATTTCTGGTGAGATGTTCTTCTGGTCAAAATACTCACT
TATTTGCTTTTTTTCATATTATGTGAAATGAATAAGGCTTCCTTTCTCGA
CCAGAAGGGCGGAGTACCAGGCATGAGAGATTTTTATGCCAAGCATCTTT
ATAAAATGTGAAGGTGTTTGCTGTAAGTTACAATCTCTCATGTTTTTCTG
CTCTGGATAAATCTACTTATGCAATGGTAAAGTACCTTTAATTCACTCAA
AATTATTAAATTTACCTTTCTGAATCGCACATGGTCTTGCATCCCAATGC
TTTACTGTGTTGAACCGTGAAAGGAGATAACCAGCACCCTCCCATTTTAT
TATGCCTTCCAAATAGGTCAAATAAAAGTAAAGGGTTCAACAAATATATT
TCTACTCTTTAAAATTGTTTAAGACTTAGTTAAGCAAAACTTCCTGTGCT
CTTCTCTATTTCTCTATTTGGTTGAGTTGCAGGAGGCCTATTCTCGCAAC
TATAGACGCTTACTAATGAGCGTCCCGTCAGCACCTTGAACTGACTACCC
AATTCCCCTCACATGGCATGGGTTGACCCGGGCGAAGGAACGTTCAACCC
TGGCCTCCTGCACAGAAGCCAATCAAATCAAAGATGGCTGCAAGAGATTT
CATTGATTGCCAACTTGATTCTTTGGGGCTTCCTAGATTTAAAAAACCTG
ACAAAATTTATTACCGACCGACTGGATTTGAAGATGTTTTATGACGCGAA
CAGAAAATATTTTAGATTGTCGCCAAATTTCCCAGGCGAGAAAAGAAAAT
GTATGAATTTCCAAGGCAATTGAATTAAAAAAGGCAAAAAAGAGTGGAAT
TTCCGATGCATTTTGCAAAAGTAGATAGATTTTTATCAGAATGTCCGACC
ACCACTGGAAAAGAAATATTGTTTCTGAGGCTAAAAAAATTTAAAAATGC
ATGTCGTCCGACGGGGGGTAACAAAAATTTTGGTTTTTAGTCAAGAATAT
CTCTTTTATTTGCATGGTTTGAATTTGTGTCAAATAACTCTTTATAATGA
CTTCATTAATACTCAGCCTGCTATTGTTTTTCTTTCTTTTTTTTCTGGTA
CACACATTGAAGTTTTTTTGTATAGTAAACTTAACCCTTCTGTTAAGCAC
CTTCTTAATGCAAGTTTCTTGTGATTATAAACAAGGTCGTCAAATGAAGG
AGAAAAATTACTTCATGGGTGTGGTCTGGCTTACTTTAGTAGCTATGAAC
AGCAATTATGGAGTATACACTTAAAAATTATTTTGTTGATTTAAGTCATC
TATAAGAATTTGATTTTCGTCAATTATTTCACTAACTTTTTTGTACTTAC
AGGTTGTTTATACATCGTTAAAATGGCTCCAGTCAAGAAGAAGTCCAATG
AGAGCATCAACTCTCGACTTGCTCTTGTAATGAAGAGTGGCAAATACACT
CTAGGATACAGATCTACTTTGAAAACTCTTCGACAAGGAAAATCAAAATT
GGTCATCATTGGCAGCAACACTCCACAATTGAGGTAAAGCTATTGTTTAC
AATCAGGTCGTCTGACCTGCAGTCTCATTTTGTTCTGAAAGATTCTAAAT
TAATGTACTGTTTTACGATTATGTCGTTGTATGAGACTGATACTTAGCCT
TATTAAGTGTGTAATATTGGTCTTTCTCGTCGCTCCCGATAAAACACTAC
AATGTGTTATTGGGTTGAACTTGAAAGTAGATTGAAATGCCCTCCCATTT
TGTTAGTCTTCTGAAATAGGCTAATTAAAGTTCAGGGCTTGACATTTTAA
CTGATTTGATTTCTTTAATATGCCTGGTGTATTTGGCAGTTGACTGATAC
CAAACTGTTTCCTTTATCCTTGACAGGAAGAGCGAGATCGAATACTACGC
TATGTTGTCCAAGACTGGTGTCCATCATTACACAGGAAACAACATCGAAT
TGGGAACAGCTTGTGGTAAATACTTCCGAGTTTCAGTATTGAGCATCACA
GATCCAGGAGATTCAGACATCATTAGATCTATGCCTTCTGAAGAGACGAA
ATAAATTGTACAAATTGCCACAAACTTAT

Coding sequence (CDS) from alignment at scaffold_145:108558..110936-

>TCONS_00048668 ID=TCONS_00048668|Name=TCONS_00048668|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_145:108558..110936- (Clytia hemisphaerica)
GAAGAGCGAGATCGAATACTACGCTATGTTGTCCAAGACTGGTGTCCATC
ATTACACAGGAAACAACATCGAATTGGGAACAGCTTGTGGTAAATACTTC
CGAGTTTCAGTATTGAGCATCACAGATCCAGGAGATTCAGACATCATTAG
ATCTATGCCTTCTGAAGAGACGAAATAAATGGCTCCAGTCAAGAAGAAGT
CCAATGAGAGCATCAACTCTCGACTTGCTCTTGTAATGAAGAGTGGCAAA
TACACTCTAGGATACAGATCTACTTTGAAAACTCTTCGACAAGGAAAATC
AAAATTGGTCATCATTGGCAGCAACACTCCACAATTGAGGAAGAGCGAGA
TCGAATACTACGCTATGTTGTCCAAGACTGGTGTCCATCATTACACAGGA
AACAACATCGAATTGGGAACAGCTTGTGGTAAATACTTCCGAGTTTCAGT
ATTGAGCATCACAGATCCAGGAGATTCAGACATCATTAGATCTATGCCTT
CTGAAGAGACGAAATAAATGGCTCCAGTCAAGAAGAAGTCCAATGAGAGC
ATCAACTCTCGACTTGCTCTTGTAATGAAGAGTGGCAAATACACTCTAGG
ATACAGATCTACTTTGAAAACTCTTCGACAAGGAAAATCAAAATTGGTCA
TCATTGGCAGCAACACTCCACAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030925XLOC_030925Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048668-proteinTCONS_00048668-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048668-exon-scaffold_145-1575043694:110618..110936TCONS_00048668-exon-scaffold_145-1575043694:110618..110936Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1575043694:109104..109284TCONS_00048668-exon-scaffold_145-1575043694:109104..109284Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1575043694:108558..108760TCONS_00048668-exon-scaffold_145-1575043694:108558..108760Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1510915933:110618..110936TCONS_00048668-exon-scaffold_145-1510915933:110618..110936Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1510915933:109104..109284TCONS_00048668-exon-scaffold_145-1510915933:109104..109284Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1510915933:108558..108760TCONS_00048668-exon-scaffold_145-1510915933:108558..108760Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1491911889:110618..110936TCONS_00048668-exon-scaffold_145-1491911889:110618..110936Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1491911889:109104..109284TCONS_00048668-exon-scaffold_145-1491911889:109104..109284Clytia hemisphaericaexon
TCONS_00048668-exon-scaffold_145-1491911889:108558..108760TCONS_00048668-exon-scaffold_145-1491911889:108558..108760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:108558..110936 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
888.306	896.66	970.255	939.283	18.1742	24.5745	18.2252	23.8317	810.722	605.58	690.246	777.859	898.862	822.76	1070.57	1061.02	1102.59	1162.76	528.268	597.354	1292.04	1171.82	1158.24	1094.32	63.7898	66.6033	1154.94	1196.24	912.469	991.977
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991Ribosomal_L30e_CS
IPR000231Ribosomal_L30e
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00048668 vs. Swiss-Prot (Human)
Match: RL30 (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.325e-55
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:  355 KKSNESINSRLALVMKSGKYTLGYRSTLKTLRQGKSKLVIIGSNTPQLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIRSMPSE 666
            KKS ESINSRL LVMKSGKY LGY+ TLK +RQGK+KLVI+ +N P LRKSEIEYYAML+KTGVHHY+GNNIELGTACGKY+RV  L+I DPGDSDIIRSMP +
Sbjct:    8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
The following BLAST results are available for this feature:
BLAST of TCONS_00048668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL301.325e-5578.8560S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
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