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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048666 ID=TCONS_00048666|Name=TCONS_00048666|organism=Clytia hemisphaerica|type=transcript|length=1218bp
AGAATTCAAAGggaacaaaagaaaaactataAAACAATTATGCAGCTACT
GGAATTGATCGCGATTTTATGCATCTTAACATGTATATGGGGCCAACCTT
GCGACGTCGTTCGCTGGACCGGCTGCAAAGGGCCAAAGCCGAAACCAAAC
ACGAACACAGCTAATGTACTTCACAGCAAACtgaaaggactggggatgat
gCCTTCACAAGTTCGAGATCACGCACAAGACTACGAcgatgaagaagaag
aggaCGAAGACGCGGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGATT
TTCAATGATATTATCTCTTCGAGGTTATCAAAGGAATTGAAAGAAAGGTC
TGATGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGACG
AAAAGAAGAACGAGGCTCATGAAGGTGACAATTTATTCAACAATGTGGAT
TATGACAATGCAGTTCTCGAAGAAAACACAGGGACTAAAGAAACGAATTC
AATACAAAATGATGACTCAGCAATCTCTATTGATTTCAATGAAGTTGAAC
AGATCTTGAAGTCACTTGAAATTACGTTATTACGGAAGAGGAATGTATTA
GAGGAAGAACGTAAATCTTTATTGGAAAAGNAAATTACGTTATTACAGAA
GAGGAAAGTATTAGAGGAAGAACGTAGATCTttattggaaaaagaaaatg
aagaaaaacaatCTTATGATGACGTAATGAACATTATCAATACACCAATG
GGTAACTTGAAACGCTTAAGGGATGATTTGATACAACTTCAAGAACTTTT
AACAAGAAAACCCAAAAGAAATACGAAATGAAGAATTAATTTCAACCCCG
TCCCCGTGtgttccaggctttatttacgtcaCTGAAGGACGATACAAGTA
AGCATCATACTACGCAGGGAGCGAGGTTGTGAAAAACTTCAACTTCCCAA
AAAAGAATTCTACAAAGGGTATTAGTGATCAAACTTCAATAGCTGGACTA
TTACGGTAATCTTTGTGATATTATGAAGCACGTACTTTATGTATATGTAT
GTATTTCCAATATGCGCAGAAATACTGCTGGACGGAGTAAGTAAATTTGA
AAgtgataaaaatgtaaatttttaaggGAGGGTTaagtcggtgtttttta
cacttttggcgaaaacgtgaagttttttaaaacacgttttaaaaataaat
acaaagtgcACCTTTTCT Run BLAST on NCBI protein sequence of TCONS_00048666-protein >TCONS_00048666-protein ID=TCONS_00048666-protein|Name=TCONS_00048666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
RIQREQKKNYKTIMQLLELIAILCILTCIWGQPCDVVRWTGCKGPKPKPN
TNTANVLHSKLKGLGMMPSQVRDHAQDYDDEEEEDEDAERKTNQKKILRI
FNDIISSRLSKELKERSDDLEDLDVAAKRQEEDEKKNEAHEGDNLFNNVD
YDNAVLEENTGTKETNSIQNDDSAISIDFNEVEQILKSLEITLLRKRNVL
EEERKSLLEKXITLLQKRKVLEEERRSLLEKENEEKQSYDDVMNIINTPM
GNLKRLRDDLIQLQELLTRKPKRNTK Run BLAST on NCBI transcript from alignment at scaffold_145:93767..95384- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048666 ID=TCONS_00048666|Name=TCONS_00048666|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at scaffold_145:93767..95384- (Clytia hemisphaerica)
AGAATTCAAAGGGAACAAAAGAAAAACTATAAAACAATTATGCAGCTACT
GGAATTGATCGCGATTTTATGCATCTTAACATGTATATGGGGCCAACCTT
GCGACGTCGTTCGCTGGACCGGCTGCAAAGGGCCAAAGCCGAAACCAAGT
AAGACTCTTACATTCAAATACGTTAACGTAAATTCTTATCAACAAAATTT
TATCTTCATAATCTTCAGTCGAAACAAAATGAAAACATTCTATTGGCCCT
TTTTTGTGACCTATGTAATCTTGTACACAGGGGAACTTGTACTAACTACT
ATTTGATTTTACTGATGGACGTGATACAATCTTTCCTGAGCGTTATCGGC
AAAAGACAAAATAAGGGACGGTATGGAGTTTTTAAAAGCTCTTATTTGAT
TTGGTTGGTCGTAAACAATTTTGTTACTTTTTCTAAAGAACACGTCATTT
TTATTACTTCAAATGACCAATTATTAAAGTATCTCCATCTCATCTGCAAA
ATGAGGGGCTAGCAACCTTTATCATTTTTTTCTGCTCTTCATTTACAGAC
ACGAACACAGCTAATGTACTTCACAGCAAACTGAAAGGACTGGGGATGAT
GCCTTCACAAGTTCGAGATCACGCACAAGACTACGACGATGAAGAAGAAG
AGGACGAAGACGCGGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGATT
TTCAATGATATTATCTCTTCGAGGTTATCAAAGGAATTGAAAGAAAGGTC
TGATGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGACG
AAAAGAAGAACGAGGCTCATGAAGGTGACAATTTATTCAACAATGTGGAT
TATGACAATGCAGTTCTCGAAGAAAACACAGGGACTAAAGAAACGAATTC
AATACAAAATGATGACTCAGCAATCTCTATTGATTTCAATGAAGTTGAAC
AGATCTTGAAGTCACTTGAAATTACGTTATTACGGAAGAGGAATGTATTA
GAGGAAGAACGTAAATCTTTATTGGAAAAGNAAATTACGTTATTACAGAA
GAGGAAAGTATTAGAGGAAGAACGTAGATCTTTATTGGAAAAAGAAAATG
AAGAAAAACAATCTTATGATGACGTAATGAACATTATCAATACACCAATG
GGTAACTTGAAACGCTTAAGGGATGATTTGATACAACTTCAAGAACTTTT
AACAAGAAAACCCAAAAGAAATACGAAATGAAGAATTAATTTCAACCCCG
TCCCCGTGTGTTCCAGGCTTTATTTACGTCACTGAAGGACGATACAAGTA
AGCATCATACTACGCAGGGAGCGAGGTTGTGAAAAACTTCAACTTCCCAA
AAAAGAATTCTACAAAGGGTATTAGTGATCAAACTTCAATAGCTGGACTA
TTACGGTAATCTTTGTGATATTATGAAGCACGTACTTTATGTATATGTAT
GTATTTCCAATATGCGCAGAAATACTGCTGGACGGAGTAAGTAAATTTGA
AAGTGATAAAAATGTAAATTTTTAAGGGAGGGTTAAGTCGGTGTTTTTTA
CACTTTTGGCGAAAACGTGAAGTTTTTTAAAACACGTTTTAAAAATAAAT
ACAAAGTGCACCTTTTCT Coding sequence (CDS) from alignment at scaffold_145:93767..95384- >TCONS_00048666 ID=TCONS_00048666|Name=TCONS_00048666|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_145:93767..95384- (Clytia hemisphaerica)
ACACGAACACAGCTAATGTACTTCACAGCAAACTGAAAGGACTGGGGATG
ATGCCTTCACAAGTTCGAGATCACGCACAAGACTACGACGATGAAGAAGA
AGAGGACGAAGACGCGGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGA
TTTTCAATGATATTATCTCTTCGAGGTTATCAAAGGAATTGAAAGAAAGG
TCTGATGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGA
CGAAAAGAAGAACGAGGCTCATGAAGGTGACAATTTATTCAACAATGTGG
ATTATGACAATGCAGTTCTCGAAGAAAACACAGGGACTAAAGAAACGAAT
TCAATACAAAATGATGACTCAGCAATCTCTATTGATTTCAATGAAGTTGA
ACAGATCTTGAAGTCACTTGAAATTACGTTATTACGGAAGAGGAATGTAT
TAGAGGAAGAACGTAAATCTTTATTGGAAAAGNAAATTACGTTATTACAG
AAGAGGAAAGTATTAGAGGAAGAACGTAGATCTTTATTGGAAAAAGAAAA
TGAAGAAAAACAATCTTATGATGACGTAATGAACATTATCAATACACCAA
TGGGTAACTTGAAACGCTTAAGGGATGATTTGATACAACTTCAAGAACTT
TTAACAAGAAAACCCAAAAGAAATACGAAATGAAGAATTCAAAGGGAACA
AAAGAAAAACTATAAAACAATTATGCAGCTACTGGAATTGATCGCGATTT
TATGCATCTTAACATGTATATGGGGCCAACCTTGCGACGTCGTTCGCTGG
ACCGGCTGCAAAGGGCCAAAGCCGAAACCAAACACGAACACAGCTAATGT
ACTTCACAGCAAACTGAAAGGACTGGGGATGATGCCTTCACAAGTTCGAG
ATCACGCACAAGACTACGACGATGAAGAAGAAGAGGACGAAGACGCGGAG
AGAAAAACTAACCAAAAGAAGATTCTAAGGATTTTCAATGATATTATCTC
TTCGAGGTTATCAAAGGAATTGAAAGAAAGGTCTGATGATCTAGAAGATT
TAGATGTAGCAGCAAAAAGACAGGAAGAGGACGAAAAGAAGAACGAGGCT
CATGAAGGTGACAATTTATTCAACAATGTGGATTATGACAATGCAGTTCT
CGAAGAAAACACAGGGACTAAAGAAACGAATTCAATACAAAATGATGACT
CAGCAATCTCTATTGATTTCAATGAAGTTGAACAGATCTTGAAGTCACTT
GAAATTACGTTATTACGGAAGAGGAATGTATTAGAGGAAGAACGTAAATC
TTTATTGGAAAAGNAAATTACGTTATTACAGAAGAGGAAAGTATTAGAGG
AAGAACGTAGATCTTTATTGGAAAAAGAAAATGAAGAAAAACAATCTTAT
GATGACGTAATGAACATTATCAATACACCAATGGGTAACTTGAAACGCTT
AAGGGATGATTTGATACAACTTCAAGAACTTTTAACAAGAAAACCCAAAA
GAAATACGAAATGAAGAATTCAAAGGGAACAAAAGAAAAACTATAAAACA
ATTATGCAGCTACTGGAATTGATCGCGATTTTATGCATCTTAACATGTAT
ATGGGGCCAACCTTGCGACGTCGTTCGCTGGACCGGCTGCAAAGGGCCAA
AGCCGAAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048666-exon-scaffold_145-1575043694:95237..95384 | TCONS_00048666-exon-scaffold_145-1575043694:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048666-exon-scaffold_145-1575043694:93767..94836 | TCONS_00048666-exon-scaffold_145-1575043694:93767..94836 | Clytia hemisphaerica | exon |
| TCONS_00048666-exon-scaffold_145-1510915933:95237..95384 | TCONS_00048666-exon-scaffold_145-1510915933:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048666-exon-scaffold_145-1510915933:93767..94836 | TCONS_00048666-exon-scaffold_145-1510915933:93767..94836 | Clytia hemisphaerica | exon |
| TCONS_00048666-exon-scaffold_145-1491911889:95237..95384 | TCONS_00048666-exon-scaffold_145-1491911889:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048666-exon-scaffold_145-1491911889:93767..94836 | TCONS_00048666-exon-scaffold_145-1491911889:93767..94836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:93767..95384 - |
Blast
The following BLAST results are available for this feature:
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