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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048662 ID=TCONS_00048662|Name=TCONS_00048662|organism=Clytia hemisphaerica|type=transcript|length=528bp
AACCTTTTTCACTCCTTCGTCACCGCTTGCTTTTTCCTCTTCATTTTCAC
CATGTCCATTCGTTTCTTCCTtcgtttcttcttcttcgtcttcATCTTCA
GAAAgctcttcttctttctcgtacaACTTCAATTTAGCGTCCAGTTTCTT
CATCATGTTGACCGCGTACCCAATATCCATCTTCATGGCCATTGGTGAGC
ATGCAATACCGTTGATTGGTCGAATGCGGTTCGTGACATCACGGTTGACG
GAAGGACTAAGTTCCAGTTCCCTAACGCGAATATTACTGAGGTTCCAGCA
CACATCTTTGATATTGGTGTCATGTCCGAAAGAAACCCAAGCACGACGAC
TATATCTATAATTgttgaagaagaaagaaaatcagAAGAGAGTAAAACGA
GAGAAAAACTAATTAGGCTTAGGCTTACGCTAGAAGAAGCATACTCCACT
TTTTGTTTACTCTTCAGATTTTATCGCAAGTTAATTCTCATTATGTCCTT
ATCATCAAATCAAATCATCTAGAACGGT Run BLAST on NCBI transcript from alignment at scaffold_145:393955..396637+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048662 ID=TCONS_00048662|Name=TCONS_00048662|organism=Clytia hemisphaerica|type=transcript|length=2683bp|location=Sequence derived from alignment at scaffold_145:393955..396637+ (Clytia hemisphaerica)
AACCTTTTTCACTCCTTCGTCACCGCTTGCTTTTTCCTCTTCATTTTCAC
CATGTCCATTCGTTTCTTCCTtcgtttcttcttcttcgtcttcATCTTCA
GAAAgctcttcttctttctcgtacaACTTCAATTTAGCGTCCAGTTTCTT
CATCATGTTGACCGCGTACCCAATATCCATCTTCATGGCCATTGGTGAGC
ATGCAATGCCTGGAGAAAAAATGGACAGGCTCCCattatataccttatcg
gcctttTTACGCCAGCCCTTATCGGGCAAGGGCCCGCGTAAGGGATCGCA
ATTAAATTAGAGCCTggtaaaaaattgagaaaaataattgacCTTGGCTT
AATAAAGACCGGCTAAAAAGGGGACGGTAAGGTAGATAGAAATGGTTGAA
ACTCTAAAGAGCACAATTTGTTTTACTTTATATGAGTCTCATTTCAATGC
AATCAACATGTAGGTGAAATTGAACTGATAATATTTTCAATCTCTCAAAT
AATAGACGCCtcagaaattaaaacattcatcaTTTATGATCAGTTTGTTT
TTCATCATTAGCTTCAACTTGAAGGACACGTTGGCAGAGGGCaatatatc
aaaatttattttcttcaaaaattaaaacatgctacGGACTGTTTGACGCT
TACGCGACCGTCAGGTAAATGGGTGgactatactagacgtcacggtTTTT
TCTAAGCAGTGCATGGAATGAAAATCCCGGTTGTTGGTGAGGTGCCCACT
AGTAGTAAATGGTCTGAGGGAAAAATAGTTTCTTTACCGAACCCAAAAAT
TTCTTCAGGTCATAACCACGACCCGATCGCTCATCGCTCATTAACCTTTT
GTAAACAGTTTGACATTTTCTCAGCCtcagaaattaaaacattcatcaAT
TTGTTATCAGTTTGTTTTTCATCATTGGCATGTAGTGCAAGGAAGATTTA
GTGAGAGAAAATTGTTTAGTGGACGATCAAATAAATCACAGACTAAAGCA
CTTGAAACTTAATCATAGCCtcagaaattaaaacattcatcaATTTGTTA
TCAGTTTGTTTTTCATCATTGGCATGTAGTGCAAGGAAGATTTAGTgaga
gaaaatttttaaattgtttagtGGACGATCAAATAAATCACAGACTAAAG
CACTTGAAACTTAATCATAAGCtcagaaattaaaacattcatcaATTTGT
TATCAGTTTGTTTTTCATCATTGTTATGAGTCACTTTGATGTTTCAAAGT
CATTGGCATAATCTGGAATGGAGTTTGGTGCTTTCTTTAAATCTGCCAGT
TGAATATAAAGTTTAGCTGCAGTCtcagaaatgaaaataactcATATAAc
tttataatgttttttttgttaaaatatcagCTAACAATCATTGccgaaaa
atatttaaattcctGTGTATTTTCAGAATTCATAAAGTTCGGGTGAGAAT
GGCGATTTCAGCCGTTCCACTTTGTTTCACCGATTTGAGTTTGTTGGTTG
gattccaggctatattctcagcctctTTGGAACATTTTGATCTTTCAGAT
TCCATTCGAGATCCTAAGATCCGAGGCTTTAAGTCAAATGtttaaactca
gagttaaaattctAAACACGCGAAGTAATTTAAAGCACTTCAAATTCATT
TgtagtttttaaaatttatgcaGGTGatttccctttttctcaaataataT
CAGataagtactagtaatcgtaatcgtcagtaaatacattcgaaaacctc
ctttttttcttttgtttaaaaagaaaacattgcagtgtaatttttctttg
ttttcaattaaaagaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntttcaattaaaagaagctattgtaacgtaaaatttctttgttctttttt
atattgaagaaaaaaaatgtctttgtttttattatatagtaaaaaaaagt
ctctaacaggacttgggagagaaaagaataaggggacaaaagtgtccccc
cgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaatagcac
tcctctaaaccaatcagattcgagtaattttgcacggctgacgattacaa
TAATAATCATCCCCTATACACTTGAAAAACTCTTTTTCTGCCAACTTCTG
ACATCAACTAGAGATATACAAAAGTTGAAGCTAATAACATTAAGACCATA
TCTTTCAGTTCAAGTTGGTTGGTACAAAGAAATCACAGAATTATGCTAGC
ATATACTCTTAACAATTAAATTCCTCCATTTCTAGGTCCCAAGGAGATGA
AAGGAAATACATACCGTTGATTGGTCGAATGCGGTTCGTGACATCACGGT
TGACGGAAGGACTAAGTTCCAGTTCCCTAACGCGAATATTACTGAGGTTC
CAGCACACATCTTTGATATTGGTGTCATGTCCGAAAGAAACCCAAGCACG
ACGACTATATCTATAATTgttgaagaagaaagaaaatcagAAGAGAGTAA
AACGAGAGAAAAACTAATTAGGCTTAGGCTTACGCTAGAAGAAGCATACT
CCACTTTTTGTTTACTCTTCAGATTTTATCGCAAGTTAATTCTCATTATG
TCCTTATCATCAAATCAAATCATCTAGAACGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048662-exon-scaffold_145-1491911889:393955..394159 | TCONS_00048662-exon-scaffold_145-1491911889:393955..394159 | Clytia hemisphaerica | exon |
| TCONS_00048662-exon-scaffold_145-1510915933:393955..394159 | TCONS_00048662-exon-scaffold_145-1510915933:393955..394159 | Clytia hemisphaerica | exon |
| TCONS_00048662-exon-scaffold_145-1575043694:393955..394159 | TCONS_00048662-exon-scaffold_145-1575043694:393955..394159 | Clytia hemisphaerica | exon |
| TCONS_00048662-exon-scaffold_145-1491911889:396315..396637 | TCONS_00048662-exon-scaffold_145-1491911889:396315..396637 | Clytia hemisphaerica | exon |
| TCONS_00048662-exon-scaffold_145-1510915933:396315..396637 | TCONS_00048662-exon-scaffold_145-1510915933:396315..396637 | Clytia hemisphaerica | exon |
| TCONS_00048662-exon-scaffold_145-1575043694:396315..396637 | TCONS_00048662-exon-scaffold_145-1575043694:396315..396637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:393955..396637 + |
Blast
BLAST of TCONS_00048662 vs. Swiss-Prot (Human)
Match: SRRT (Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.454e-18 Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = -1
Query: 121 AWVSFGHDTNIKDVCWNLSNIRVRELELSPSVNRDVTNRIRPINGIACSPMAMKMDIGYAVNMMKKLDAKLKLY 342
WV+F NIK++CWNL NIR+RE ELSP VNRD+T R+R INGI ++ DI A ++ LD + +L+
Sbjct: 465 GWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLW 538
The following BLAST results are available for this feature:
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