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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048626 ID=TCONS_00048626|Name=TCONS_00048626|organism=Clytia hemisphaerica|type=transcript|length=1191bp
CAGATTTAGATTGCAGTTTTGTATGTACTGTGAGTTAATTTCAAAAGGCA
CGCGGTTAAtactttttttcgattttccgaTGTAATCAAAAGTCAAATAC
TTGAATAAACTCGCGTCTTAATTAACGAAGCAAAAACTTTCAAGATGGAG
ATGACTACAGAATTCCCTATAACGTTCAACAACCATCACTGCTACACTAA
AGAATGCGCGGAGAAATATGCAGTGTGGACAGGGATTAACGTTGCAACCA
ATATACATATTTTTTACGCTATATGCTTAtggtatttttttaataatcaG
AAGAGATTTCATGGGAAATGTTTACACTGGAATGCTTTGTACTTGCatGT
CTTTATCAGCATGGTGACGTCATTGATCTTGGTATACTTCTCATCTCTAT
CGCTGAACTATCTTACCGCAACTTCAATGTCTATCACTTGGCTAATCTTA
TCTCTCCTTCATTTGGTGCTGGTGAAAGTTTGTCAACGATGGAACTGTTC
TTTTCACCAGAATTTGGAAACTTTTCCACGTACACTGGAGTTGTAATCAA
TCTTTATTTGCATAATGTTGTATTCATTTAAATTAAGTCATCTTGGCTTT
GGAAGAAGATTATAAATGTAGGTTTGCGTAACTGACCATCATTATCAATC
AATTTGCTTGGGATAACACAATGTCAATTACTTGGTTCTTTTTATAAATT
CATTTAGTGCAATATCATATCATATAgtgcaaaatattttacctcgttaa
ttttaaatattattaTGAATGAAATCTTCCTGACTTTGAAAGAAAATCAT
AAATGCAGACTGACCTAACCGCCCattattttcactttcttaCATTATCT
TCAAAGTCGCTCACTTGTGACTGTTTTTATCGTTGTCTATTTTGGTGCTT
GTGAAAATTTATCAATGATGGAATCGGCCAGCAAATCAAGCAAACTCGAG
ATATATGTCTTCACAGTAAAATCTTTATCTCAACACGGCTTTCGTCATTG
TGATATACCTTATTTTCTAgattttggagtttttttggaaatttgtaaaT
TTCATACTTTGTATATAATCTTTATCTCTTTTTTTGTAAGatagaaattg
aaaatattttttattcatttttgtccctatcaaattatttttttgtataa
aaagtaTAACACGATTAAAGTAGAAATATACCCGACGTCGC Run BLAST on NCBI protein sequence of TCONS_00048626-protein >TCONS_00048626-protein ID=TCONS_00048626-protein|Name=TCONS_00048626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MEMTTEFPITFNNHHCYTKECAEKYAVWTGINVATNIHIFYAICLWYFFN
NQKRFHGKCLHWNALYLHVFISMVTSLILVYFSSLSLNYLTATSMSITWL
ILSLLHLVLVKVCQRWNCSFHQNLETFPRTLEL Run BLAST on NCBI transcript from alignment at scaffold_145:66201..68023+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048626 ID=TCONS_00048626|Name=TCONS_00048626|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at scaffold_145:66201..68023+ (Clytia hemisphaerica)
CAGATTTAGATTGCAGTTTTGTATGTACTGTGAGTTAATTTCAAAAGGCA
CGCGGTTAAtactttttttcgattttccgaTGTAATCAAAAGTCAAATAC
TTGAATAAACTCGCGTCTTAATTAACGAAGCAAAAACTTTCAAGATGGAG
ATGACTACAGAATTCCCTATAACGTTCAACAACCATCACTGCTACACTAA
AGAATGCGCGGAGAAATATGCAGTGTGGACAGGGATTAACGTTGCAACCA
ATATACATATTTTTTACGCTATATGCTTAtggtatttttttaataatcaG
AAGAGATTTCATGGGAAATGTTTACACTGGAATGCTTTGTACTTGCGTAA
GTAgccaataaatattttaatacaTATCTGTTAGTTCCGCTATCCCTCCC
CAATTCCTTCTTTACTACATATCTacagataggaacaatagaccttttca
taaattacgtcacgaacatcacttgcctcattttgaaattattgtaatgg
tgattaactcccagtcGATTCTAttacaactactttctattcataaaaaa
atcatttaatgtctcaagggatatgatcaccatggtaattgtttgaatac
gaggccagtgatgttcgtgacgtaatttatgaaaaggtctattggaagGT
CGATTAGGACTTGATAtattgcacacttgttccttagtATCTGGGCGTGT
TTTTGAAACTCTGTTTTTTGCTTTACATAGCAATAAAAACTCATTAGGCC
TCTGACAAAATACTGTGTGGTCTGCACGTTCAACggcgtttttttttcaa
atgccaAGATTAGACTAATACTCTGTAATTATGTAGCCGTCACCCGGCAT
CGCACCCACAGAGTAGAGTGTTGCATATGCACGAAAAAGCCCGTTGGATT
GTGAATAGGGTGTTTTAGGGAGGGATCCCAGCTCAAGGAACAAAGAAATA
CCACCTtaaacaaatttcttttttctagatGTCTTTATCAGCATGGTGAC
GTCATTGATCTTGGTATACTTCTCATCTCTATCGCTGAACTATCTTACCG
CAACTTCAATGTCTATCACTTGGCTAATCTTATCTCTCCTTCATTTGGTG
CTGGTGAAAGTTTGTCAACGATGGAACTGTTCTTTTCACCAGAATTTGGA
AACTTTTCCACGTACACTGGAGTTGTAATCAATCTTTATTTGCATAATGT
TGTATTCATTTAAATTAAGTCATCTTGGCTTTGGAAGAAGATTATAAATG
TAGGTTTGCGTAACTGACCATCATTATCAATCAATTTGCTTGGGATAACA
CAATGTCAATTACTTGGTTCTTTTTATAAATTCATTTAGTGCAATATCAT
ATCATATAgtgcaaaatattttacctcgttaattttaaatattattaTGA
ATGAAATCTTCCTGACTTTGAAAGAAAATCATAAATGCAGACTGACCTAA
CCGCCCattattttcactttcttaCATTATCTTCAAAGTCGCTCACTTGT
GACTGTTTTTATCGTTGTCTATTTTGGTGCTTGTGAAAATTTATCAATGA
TGGAATCGGCCAGCAAATCAAGCAAACTCGAGATATATGTCTTCACAGTA
AAATCTTTATCTCAACACGGCTTTCGTCATTGTGATATACCTTATTTTCT
AgattttggagtttttttggaaatttgtaaaTTTCATACTTTGTATATAA
TCTTTATCTCTTTTTTTGTAAGatagaaattgaaaatattttttattcat
ttttgtccctatcaaattatttttttgtataaaaagtaTAACACGATTAA
AGTAGAAATATACCCGACGTCGC Coding sequence (CDS) from alignment at scaffold_145:66201..68023+ >TCONS_00048626 ID=TCONS_00048626|Name=TCONS_00048626|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_145:66201..68023+ (Clytia hemisphaerica)
ATGGAGATGACTACAGAATTCCCTATAACGTTCAACAACCATCACTGCTA
CACTAAAGAATGCGCGGAGAAATATGCAGTGTGGACAGGGATTAACGTTG
CAACCAATATACATATTTTTTACGCTATATGCTTAtggtatttttttaat
aatcaGAAGAGATTTCATGGGAAATGTTTACACTGGAATGCTTTGTACTT
GCatGTCTTTATCAGCATGGTGACGTCATTGATCTTGGTATACTTCTCAT
CTCTATCGCTGAACTATCTTACCGCAACTTCAATGTCTATCACTTGGCTA
ATCTTATCTCTCCTTCATTTGGTGCTGGTGAAAGTTTGTCAACGATGGAA
CTGTTCTTTTCACCAGAATTTGGAAACTTTTCCACGTACACTGGAGTTGT
AAATGGAGATGACTACAGAATTCCCTATAACGTTCAACAACCATCACTGC
TACACTAAAGAATGCGCGGAGAAATATGCAGTGTGGACAGGGATTAACGT
TGCAACCAATATACATATTTTTTACGCTATATGCTTAtggtattttttta
ataatcaGAAGAGATTTCATGGGAAATGTTTACACTGGAATGCTTTGTAC
TTGCatGTCTTTATCAGCATGGTGACGTCATTGATCTTGGTATACTTCTC
ATCTCTATCGCTGAACTATCTTACCGCAACTTCAATGTCTATCACTTGGC
TAATCTTATCTCTCCTTCATTTGGTGCTGGTGAAAGTTTGTCAACGATGG
AACTGTTCTTTTCACCAGAATTTGGAAACTTTTCCACGTACACTGGAGTT
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048626-exon-scaffold_145-1491911889:66201..66546 | TCONS_00048626-exon-scaffold_145-1491911889:66201..66546 | Clytia hemisphaerica | exon |
| TCONS_00048626-exon-scaffold_145-1510915933:66201..66546 | TCONS_00048626-exon-scaffold_145-1510915933:66201..66546 | Clytia hemisphaerica | exon |
| TCONS_00048626-exon-scaffold_145-1575043694:66201..66546 | TCONS_00048626-exon-scaffold_145-1575043694:66201..66546 | Clytia hemisphaerica | exon |
| TCONS_00048626-exon-scaffold_145-1491911889:67179..68023 | TCONS_00048626-exon-scaffold_145-1491911889:67179..68023 | Clytia hemisphaerica | exon |
| TCONS_00048626-exon-scaffold_145-1510915933:67179..68023 | TCONS_00048626-exon-scaffold_145-1510915933:67179..68023 | Clytia hemisphaerica | exon |
| TCONS_00048626-exon-scaffold_145-1575043694:67179..68023 | TCONS_00048626-exon-scaffold_145-1575043694:67179..68023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:66201..68023 + |
Blast
The following BLAST results are available for this feature:
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