TCONS_00048602 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048602
Unique Name	TCONS_00048602
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1277

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_145:28844..31057+
coding sequence from alignment at scaffold_145:28844..31057+

transcript sequence

>TCONS_00048602 ID=TCONS_00048602|Name=TCONS_00048602|organism=Clytia hemisphaerica|type=transcript|length=1277bp
ATCAATGACCTTTCCAACGCTTTTCTATACACCTAAGTCATTATCTAGAT
ATTAATACTCATTTCACTCCTTTTCTTTCAGCAAACTTTGCCTATCACAA
AATAGGTAGCGCAAAGACTTATCTTAATTCCATCATTGTCATTCCACAAA
TCCAAGATGCGATCATGCAACACAAGGCGGCATTACTAGGGATTCTGTCC
GACCCTGGATGTAATGCAATCAGTCAAATTGTATTCGATCCCGATATAAT
CGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCTCTCACGT
CATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCGTATATTT
AAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACGC
TGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTCATTGTCA
AATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagacaacaaag
ctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACGT
TGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAAA
AGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCATCTTTATC
GACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAATCCTTCT
TCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCTGAAATCG
TTGACAAACAAGCAGGAATTTTCGTCACATGCAACGCGAAACCAAATTAT
GGCGATGATCAGAGGAACGTGGAAGACAGACTCAATTACATGGACACGGT
ACCATTGGCAGTGACGGACACAAGCGCTCCAGAGTGGATCTTGGATCACA
GCTTCGAAATCTTGCTGTGGATGGTTGATCAGATGAAGAAATACAATTGT
TACGTGGCAAGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGACTACGT
TCAACCAAAGATCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGG
CAGGGGTACGTTGTGAAGCTCAACAGCAAAACGCTCAAAATCATGATTGT
AATACAAGTTCTTCGAGGAACTCGAGCAGCGAACGGGTGACAAATGATCG
ACCAGGATGTTCCAAGTGACACAACGATTCACCTTCCAGTGGCTCTGAAG
GTGCCATTAGTAAGTTTTTTCACTCATAATCTTTTGAAATCTAGTGTAAT
TTATTGGCACTGCATCCATGTGCTGAC

Run BLAST on NCBI

protein sequence of TCONS_00048602-protein

>TCONS_00048602-protein ID=TCONS_00048602-protein|Name=TCONS_00048602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MQHKAALLGILSDPGCNAISQIVFDPDIIEISGGLYYKLSSRSLTSCPYK
PTDKGRISPRIFKEVPDKVDKTGGVFADAVKNSFPDIKERMEFIVKFYQC
LLAFQLPQKTTKLALVGPKNSGKTSFVNVVRGLTHPEFIASLSKEKIFGM
SMINSDTQFIFIDELSSEIMAGDQAKILLQGGPITVPRKHEEPEIVDKQA
GIFVTCNAKPNYGDDQRNVEDRLNYMDTVPLAVTDTSAPEWILDHSFEIL
LWMVDQMKKYNCYVARKELFFVRDVTDYVQPKITLCLPQGDLMKLAGVRC
EAQQQNAQNHDCNTSSSRNSSSERVTNDRPGCSK

Run BLAST on NCBI

transcript from alignment at scaffold_145:28844..31057+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048602 ID=TCONS_00048602|Name=TCONS_00048602|organism=Clytia hemisphaerica|type=transcript|length=2214bp|location=Sequence derived from alignment at scaffold_145:28844..31057+ (Clytia hemisphaerica)
ATCAATGACCTTTCCAACGCTTTTCTATACACCTAAGTCATTATCTAGAT
ATTAATACTCATTTCACTCCTTTTCTTTCAGCAAACTTTGCCTATCACAA
AATAGGTAGCGCAAAGACTTATCTTAATTCCATCATTGTCATTCCACAAA
TCCAAGATGCGATCATGCAACACAAGGCGGCATTACTAGGGATTCTGTCC
GACCCTGGATGTAATGTAAGACATATTATTTCTATACACGTCGATACCGA
TTCTATATAGTCGATTTTTCTAGCTTTGCTAgctaacaaacaaacaaact
tggCTTTGTTTTGGCTTCTTCAATAAAcagaagaaaaggaaaaaatcaaa
acgtaATAGTCTgcattaaaatacaaagaacTCGATTTTCTTGGAATAGT
TTTTAATTGTTCATNctaacaaacaaacaaacttggCTTTGTTTTGGCTT
CTTCAATAAAcagaagaaaaggaaaaaatcaaaacgtaATAGTCTgcatt
aaaatacaaagaacTCGATTTTCTTGGAATAGATTTTAATTGTTCAGGAA
AATACTCCAAATTTACGATTCTCGTGAAAATGAGCTCTCACCAAACAATA
TGAATATGAtgatatatgaaatattttatttctgaaatattttaattaca
ttaaacCGTGTTTTATTTTCAGGCAATCAGTCAAATTGTATTCGATCCCG
ATATAATCGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCT
CTCACGTCATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCG
TATATTTAAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTG
CCGACGCTGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTC
ATTGTCAAATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagac
aacaaagctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCG
TCAACGTTGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCA
AAGGAAAAGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCAT
CTTTATCGACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAA
TCCTTCTTCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCT
GAAATCGTTGACAAACAAGCAGGTGAGCCAAGAAAGTTATTTTCAAGAAA
AGCTTTATGTGCAGTAAACATTGACAGTTCTAGTACATATTTTGCTTTTA
ACGCATCTGACTTTTTGTTTGTAAAAAGACTTGTCCTTTCTGTTTTAAGG
AATTTTCGTCACATGCAACGCGAAACCAAATTATGGCGATGATCAGAGGA
ACGTGGAAGACAGACTCAATTACATGGACACGGTACCATTGGCAGTGACG
GACACAAGCGCTCCAGAGTGGATCTTGGATCACAGCTTCGAAATCTTGCT
GTGGATGGTTGATCAGATGAAGAAATACAATTGTTACGTGGCAAGAAAAG
AACTGTTTTTCGTCCGTGATGTCACCGACTACGTTCAACCAAAGGTATAA
TTCAAAGTTAACATTTGTGTTAGTTGGTAACAGATACTCGGCGGATTTAT
ATTCTAAGGCATagaaacaaatttttcattcgTAATTCTATTTTTTTAGA
TCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGGCAGGGGTACGT
TGTGAAGCTCAACAGCAAAACGCTCAAAATCATGgtaaatatattatatt
tctaATTCCCAGTAGCAATAATCGAACAAtggtttttcaagatttcaccA
AAAGGAACCGTCTCATAGTTGTGCTCAATTATTTTTCAGATTGTAATACA
AGTTCTTCGACGAACTCGAGCAGCGAACGGGTGGNATTATATTTCTAATT
CCCAGTAGCAATAATCGAACAAtggtttttcaagatttcaccAAAAGGAA
CCGTCTCATAGTTGTGCTCAATTATTTTTCAGATTGTAATACAAGTTCTT
CGAGGAACTCGAGCAGCGAACGGGTGACAAATGATCGACCAGGATGTTCC
AAGTGACACAACGATTCACCTTCCAGTGGCTCTGAAGGTGCCATTAGTAA
GTTTTTTCACTCATAATCTTTTGAAATCTAGTGTAATTTATTGGCACTGC
ATCCATGTGCTGAC

Coding sequence (CDS) from alignment at scaffold_145:28844..31057+

>TCONS_00048602 ID=TCONS_00048602|Name=TCONS_00048602|organism=Clytia hemisphaerica|type=CDS|length=5025bp|location=Sequence derived from alignment at scaffold_145:28844..31057+ (Clytia hemisphaerica)
ATGCAACACAAGGCGGCATTACTAGGGATTCTGTCCGACCCTGGATGTAA
TGCAATCAGTCAAATTGTATTCGATCCCGATATAATCGAAATAAGCGGTG
GACTGTATTACAAGCTATCAAGCAGATCTCTCACGTCATGCCCCTACAAA
CCAACAGATAAAGGACGCATTTCGCCGCGTATATTTAAAGAAGTACCGGA
CAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACGCTGTGAAAAATAGTT
TTCCAGATATTAAAGAACGAATGGAATTCATTGTCAAATTTTACCAGTGC
TTGCTTGCATTTCAGCTACcacaaaagacaacaaagctGGCACTGGTTGG
TCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACGTTGTCAGAGGATTGA
CCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAAAAGATCTTTGGCATG
TCTATGATCAACAGTGACACTCAATTCATCTTTATCGACGAGTTGAGTTC
CGAAATCATGGCTGGTGATCAAGCCAAAATCCTTCTTCAAGGTGGTCCAA
TCACTGTGCCAAGAAAGCATGAAGAACCTGAAATCGTTGACAAACAAGCA
GGAATTTTCGTCACATGCAACGCGAAACCAAATTATGGCGATGATCAGAG
GAACGTGGAAGACAGACTCAATTACATGGACACGGTACCATTGGCAGTGA
CGGACACAAGCGCTCCAGAGTGGATCTTGGATCACAGCTTCGAAATCTTG
CTGTGGATGGTTGATCAGATGAAGAAATACAATTGTTACGTGGCAAGAAA
AGAACTGTTTTTCGTCCGTGATGTCACCGACTACGTTCAACCAAAGATCA
CACTTTGTCTGCCACAAGGAGATTTGATGAAACTGGCAGGGGTACGTTGT
GAAGCTCAACAGCAAAACGCTCAAAATCATGATTGTAATACAAGTTCTTC
GAGGAACTCGAGCAGCGAACGGGTGACAAATGATCGACCAGGATGTTCCA
AGTGAATGCAACACAAGGCGGCATTACTAGGGATTCTGTCCGACCCTGGA
TGTAATGCAATCAGTCAAATTGTATTCGATCCCGATATAATCGAAATAAG
CGGTGGACTGTATTACAAGCTATCAAGCAGATCTCTCACGTCATGCCCCT
ACAAACCAACAGATAAAGGACGCATTTCGCCGCGTATATTTAAAGAAGTA
CCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACGCTGTGAAAAA
TAGTTTTCCAGATATTAAAGAACGAATGGAATTCATTGTCAAATTTTACC
AGTGCTTGCTTGCATTTCAGCTACcacaaaagacaacaaagctGGCACTG
GTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACGTTGTCAGAGG
ATTGACCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAAAAGATCTTTG
GCATGTCTATGATCAACAGTGACACTCAATTCATCTTTATCGACGAGTTG
AGTTCCGAAATCATGGCTGGTGATCAAGCCAAAATCCTTCTTCAAGGTGG
TCCAATCACTGTGCCAAGAAAGCATGAAGAACCTGAAATCGTTGACAAAC
AAGCAGGAATTTTCGTCACATGCAACGCGAAACCAAATTATGGCGATGAT
CAGAGGAACGTGGAAGACAGACTCAATTACATGGACACGGTACCATTGGC
AGTGACGGACACAAGCGCTCCAGAGTGGATCTTGGATCACAGCTTCGAAA
TCTTGCTGTGGATGGTTGATCAGATGAAGAAATACAATTGTTACGTGGCA
AGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGACTACGTTCAACCAAA
GATCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGGCAGGGGTAC
GTTGTGAAGCTCAACAGCAAAACGCTCAAAATCATGATTGTAATACAAGT
TCTTCGAGGAACTCGAGCAGCGAACGGGTGACAAATGATCGACCAGGATG
TTCCAAGTGAATGCAACACAAGGCGGCATTACTAGGGATTCTGTCCGACC
CTGGATGTAATGCAATCAGTCAAATTGTATTCGATCCCGATATAATCGAA
ATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCTCTCACGTCATG
CCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCGTATATTTAAAG
AAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACGCTGTG
AAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTCATTGTCAAATT
TTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagacaacaaagctGG
CACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACGTTGTC
AGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAAAAGAT
CTTTGGCATGTCTATGATCAACAGTGACACTCAATTCATCTTTATCGACG
AGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAATCCTTCTTCAA
GGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCTGAAATCGTTGA
CAAACAAGCAGGAATTTTCGTCACATGCAACGCGAAACCAAATTATGGCG
ATGATCAGAGGAACGTGGAAGACAGACTCAATTACATGGACACGGTACCA
TTGGCAGTGACGGACACAAGCGCTCCAGAGTGGATCTTGGATCACAGCTT
CGAAATCTTGCTGTGGATGGTTGATCAGATGAAGAAATACAATTGTTACG
TGGCAAGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGACTACGTTCAA
CCAAAGATCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGGCAGG
GGTACGTTGTGAAGCTCAACAGCAAAACGCTCAAAATCATGATTGTAATA
CAAGTTCTTCGAGGAACTCGAGCAGCGAACGGGTGACAAATGATCGACCA
GGATGTTCCAAGTGAATGCAACACAAGGCGGCATTACTAGGGATTCTGTC
CGACCCTGGATGTAATGCAATCAGTCAAATTGTATTCGATCCCGATATAA
TCGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCTCTCACG
TCATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCGTATATT
TAAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACG
CTGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTCATTGTC
AAATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagacaacaaa
gctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACG
TTGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAA
AAGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCATCTTTAT
CGACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAATCCTTC
TTCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCTGAAATC
GTTGACAAACAAGCAGGAATTTTCGTCACATGCAACGCGAAACCAAATTA
TGGCGATGATCAGAGGAACGTGGAAGACAGACTCAATTACATGGACACGG
TACCATTGGCAGTGACGGACACAAGCGCTCCAGAGTGGATCTTGGATCAC
AGCTTCGAAATCTTGCTGTGGATGGTTGATCAGATGAAGAAATACAATTG
TTACGTGGCAAGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGACTACG
TTCAACCAAAGATCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTG
GCAGGGGTACGTTGTGAAGCTCAACAGCAAAACGCTCAAAATCATGATTG
TAATACAAGTTCTTCGAGGAACTCGAGCAGCGAACGGGTGACAAATGATC
GACCAGGATGTTCCAAGTGAATGCAACACAAGGCGGCATTACTAGGGATT
CTGTCCGACCCTGGATGTAATGCAATCAGTCAAATTGTATTCGATCCCGA
TATAATCGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCTC
TCACGTCATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCGT
ATATTTAAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGC
CGACGCTGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTCA
TTGTCAAATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagaca
acaaagctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGT
CAACGTTGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCAA
AGGAAAAGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCATC
TTTATCGACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAAT
CCTTCTTCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCTG
AAATCGTTGACAAACAAGCAGGAATTTTCGTCACATGCAACGCGAAACCA
AATTATGGCGATGATCAGAGGAACGTGGAAGACAGACTCAATTACATGGA
CACGGTACCATTGGCAGTGACGGACACAAGCGCTCCAGAGTGGATCTTGG
ATCACAGCTTCGAAATCTTGCTGTGGATGGTTGATCAGATGAAGAAATAC
AATTGTTACGTGGCAAGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGA
CTACGTTCAACCAAAGATCACACTTTGTCTGCCACAAGGAGATTTGATGA
AACTGGCAGGGGTACGTTGTGAAGCTCAACAGCAAAACGCTCAAAATCAT
GATTGTAATACAAGTTCTTCGAGGAACTCGAGCAGCGAACGGGTGACAAA
TGATCGACCAGGATGTTCCAAGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030910	XLOC_030910	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00048602-protein	TCONS_00048602-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_145	supercontig	scaffold_145:28844..31057 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.606202	1.63203	0	0	0.164348	0.681477	0.208977	0.23691	3.05177	4.66122	1.92249	1.50353	3.28175	3.99472	0.104918	0.127108	0	0.197811	0	0.51539	0	0	0.679388	1.20017	0	0.162158	0	0.340283	0.599425	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00048602 vs. Swiss-Prot (Human)

BLAST of TCONS_00048602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00048602 (transcript) - C. hemisphaerica