TCONS_00048601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048601
Unique NameTCONS_00048601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048601 ID=TCONS_00048601|Name=TCONS_00048601|organism=Clytia hemisphaerica|type=transcript|length=1139bp
ATCAATGACCTTTCCAACGCTTTTCTATACACCTAAGTCATTATCTAGAT
ATTAATACTCATTTCACTCCTTTTCTTTCAGCAAACTTTGCCTATCACAA
AATAGGTAGCGCAAAGACTTATCTTAATTCCATCATTGTCATTCCACAAA
TCCAAGATGCGATCATGCAACACAAGGCGGCATTACTAGGGATTCTGTCC
GACCCTGGATGTAATGCAATCAGTCAAATTGTATTCGATCCCGATATAAT
CGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCTCTCACGT
CATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCGTATATTT
AAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTGCCGACGC
TGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTCATTGTCA
AATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagacaacaaag
ctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCGTCAACGT
TGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCAAAGGAAA
AGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCATCTTTATC
GACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAATCCTTCT
TCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCTGAAATCG
TTGACAAACAAGCAGGAATTTTCGTCACATGCAACGCGAAACCAAATTAT
GGCGATGATCAGAGGAACGTGGAAGACAGACTCAATTACATGGACACGGT
ACCATTGGCAGTGACGGACACAAGCGCTCCAGAGTGGATCTTGGATCACA
GCTTCGAAATCTTGCTGTGGATGGTTGATCAGATGAAGAAATACAATTGT
TACGTGGCAAGAAAAGAACTGTTTTTCGTCCGTGATGTCACCGACTACGT
TCAACCAAAGATCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGG
CAGGGGTACGTTGTGAAGCTCAACAGCAAAACGCTCAAAATCATGATTGT
AATACAAGTTCTTCGACGAACTCGAGCAGCGAACGGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_145:28844..30776+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048601 ID=TCONS_00048601|Name=TCONS_00048601|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at scaffold_145:28844..30776+ (Clytia hemisphaerica)
ATCAATGACCTTTCCAACGCTTTTCTATACACCTAAGTCATTATCTAGAT
ATTAATACTCATTTCACTCCTTTTCTTTCAGCAAACTTTGCCTATCACAA
AATAGGTAGCGCAAAGACTTATCTTAATTCCATCATTGTCATTCCACAAA
TCCAAGATGCGATCATGCAACACAAGGCGGCATTACTAGGGATTCTGTCC
GACCCTGGATGTAATGTAAGACATATTATTTCTATACACGTCGATACCGA
TTCTATATAGTCGATTTTTCTAGCTTTGCTAgctaacaaacaaacaaact
tggCTTTGTTTTGGCTTCTTCAATAAAcagaagaaaaggaaaaaatcaaa
acgtaATAGTCTgcattaaaatacaaagaacTCGATTTTCTTGGAATAGT
TTTTAATTGTTCATNctaacaaacaaacaaacttggCTTTGTTTTGGCTT
CTTCAATAAAcagaagaaaaggaaaaaatcaaaacgtaATAGTCTgcatt
aaaatacaaagaacTCGATTTTCTTGGAATAGATTTTAATTGTTCAGGAA
AATACTCCAAATTTACGATTCTCGTGAAAATGAGCTCTCACCAAACAATA
TGAATATGAtgatatatgaaatattttatttctgaaatattttaattaca
ttaaacCGTGTTTTATTTTCAGGCAATCAGTCAAATTGTATTCGATCCCG
ATATAATCGAAATAAGCGGTGGACTGTATTACAAGCTATCAAGCAGATCT
CTCACGTCATGCCCCTACAAACCAACAGATAAAGGACGCATTTCGCCGCG
TATATTTAAAGAAGTACCGGACAAAGTGGATAAAACTGGTGGTGTTTTTG
CCGACGCTGTGAAAAATAGTTTTCCAGATATTAAAGAACGAATGGAATTC
ATTGTCAAATTTTACCAGTGCTTGCTTGCATTTCAGCTACcacaaaagac
aacaaagctGGCACTGGTTGGTCCAAAAAATTCAGGAAAAACCTCGTTCG
TCAACGTTGTCAGAGGATTGACCCATCCTGAATTTATCGCCTCTTTGTCA
AAGGAAAAGATCTTTGGCATGTCTATGATCAACAGTGACACTCAATTCAT
CTTTATCGACGAGTTGAGTTCCGAAATCATGGCTGGTGATCAAGCCAAAA
TCCTTCTTCAAGGTGGTCCAATCACTGTGCCAAGAAAGCATGAAGAACCT
GAAATCGTTGACAAACAAGCAGGTGAGCCAAGAAAGTTATTTTCAAGAAA
AGCTTTATGTGCAGTAAACATTGACAGTTCTAGTACATATTTTGCTTTTA
ACGCATCTGACTTTTTGTTTGTAAAAAGACTTGTCCTTTCTGTTTTAAGG
AATTTTCGTCACATGCAACGCGAAACCAAATTATGGCGATGATCAGAGGA
ACGTGGAAGACAGACTCAATTACATGGACACGGTACCATTGGCAGTGACG
GACACAAGCGCTCCAGAGTGGATCTTGGATCACAGCTTCGAAATCTTGCT
GTGGATGGTTGATCAGATGAAGAAATACAATTGTTACGTGGCAAGAAAAG
AACTGTTTTTCGTCCGTGATGTCACCGACTACGTTCAACCAAAGGTATAA
TTCAAAGTTAACATTTGTGTTAGTTGGTAACAGATACTCGGCGGATTTAT
ATTCTAAGGCATagaaacaaatttttcattcgTAATTCTATTTTTTTAGA
TCACACTTTGTCTGCCACAAGGAGATTTGATGAAACTGGCAGGGGTACGT
TGTGAAGCTCAACAGCAAAACGCTCAAAATCATGgtaaatatattatatt
tctaATTCCCAGTAGCAATAATCGAACAAtggtttttcaagatttcaccA
AAAGGAACCGTCTCATAGTTGTGCTCAATTATTTTTCAGATTGTAATACA
AGTTCTTCGACGAACTCGAGCAGCGAACGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030910XLOC_030910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048601-exon-scaffold_145-1491911889:28844..29058TCONS_00048601-exon-scaffold_145-1491911889:28844..29058Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1510915933:28844..29058TCONS_00048601-exon-scaffold_145-1510915933:28844..29058Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1575043694:28844..29058TCONS_00048601-exon-scaffold_145-1575043694:28844..29058Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1491911889:29516..30065TCONS_00048601-exon-scaffold_145-1491911889:29516..30065Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1510915933:29516..30065TCONS_00048601-exon-scaffold_145-1510915933:29516..30065Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1575043694:29516..30065TCONS_00048601-exon-scaffold_145-1575043694:29516..30065Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1491911889:30193..30437TCONS_00048601-exon-scaffold_145-1491911889:30193..30437Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1510915933:30193..30437TCONS_00048601-exon-scaffold_145-1510915933:30193..30437Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1575043694:30193..30437TCONS_00048601-exon-scaffold_145-1575043694:30193..30437Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1491911889:30543..30627TCONS_00048601-exon-scaffold_145-1491911889:30543..30627Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1510915933:30543..30627TCONS_00048601-exon-scaffold_145-1510915933:30543..30627Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1575043694:30543..30627TCONS_00048601-exon-scaffold_145-1575043694:30543..30627Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1491911889:30733..30776TCONS_00048601-exon-scaffold_145-1491911889:30733..30776Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1510915933:30733..30776TCONS_00048601-exon-scaffold_145-1510915933:30733..30776Clytia hemisphaericaexon
TCONS_00048601-exon-scaffold_145-1575043694:30733..30776TCONS_00048601-exon-scaffold_145-1575043694:30733..30776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:28844..30776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.944214	0.655422	0.431932	0	5.62453	4.05504	3.97792	5.05416	2.31393	2.01361	2.08967	4.06622	2.77155	2.87561	0.745983	0.673801	0.48684	0.125068	0.811046	0.469009	0.331954	0.161915	0.400776	0	0.942033	2.37256	0.36616	0	0.666553	1.38045
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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