TCONS_00048587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048587
Unique NameTCONS_00048587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048587 ID=TCONS_00048587|Name=TCONS_00048587|organism=Clytia hemisphaerica|type=transcript|length=822bp
atgtttttatttcaatgaAGATTTTTCCTAACAAAAAGAGACGTGTCAGG
CATATTCATTGTATTGTCCTTTTTTGGCATATGAAGTGATATCTAAGGGT
GATTTAAATTGAAGAAATAACTTTCTGAACTTAATTTGTTATTGTTAGGG
ATTAATTTTGAAAAGGCACTTTGTACttaaatcaatttattttcGCGTAC
TGTGCATGAAATTGATCGCCATCATTGACCTGGTATGCCTTTTTTGCATC
ATTTAAATTTGACAGAGTTTTTGCTATGCTATGCATTTGAGTTGCCAAAT
ATCGCTAAGTCTCGTGGTGCACGAACGAGTTTTTCTAGTTTTCAGTGATG
ATAAAAGAATGTGGATTTTCGTTCTAGAATGGTAGTTTGAATAGAGATAT
AGTAAGAGCAATGAGTAAGACACTGCCACCGCAAGTACAGTCATTTCTGG
CTATTTTGGTATCGTTATTGATCAAGCCGTTCTTTATTTAGAGTGAAGCT
GGTGGTCCCTTCAATttagaaattcttaaaaattaatgtcCCTGTTATTC
TCATCTTTCAACTAATTAAAATCTTTCCTCTTAATCGAAGAATATATTTT
GGTCCCTTTGAAGTTTGTTTGAATGAGATTCAACTGAGTAACATCTAGAA
CGTACACTCGTTTAAATCTCTGAACTTTTCTGATTACTAGCCTTCGAATT
TTCGTGATCAGGGCCTTGATACGTGCTCATGGTTCAACAATGAACTTAGC
GATGATTCAACAAGCTTATTCAACTTTGAAAACATCATGAGCTGACCAAC
AATTAAAATTGTGTAACACATC
Run BLAST on NCBI

transcript from alignment at scaffold_143:375652..376473

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048587 ID=TCONS_00048587|Name=TCONS_00048587|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at scaffold_143:375652..376473 (Clytia hemisphaerica)
GATGTGTTACACAATTTTAATTGTTGGTCAGCTCATGATGTTTTCAAAGT
TGAATAAGCTTGTTGAATCATCGCTAAGTTCATTGTTGAACCATGAGCAC
GTATCAAGGCCCTGATCACGAAAATTCGAAGGCTAGTAATCAGAAAAGTT
CAGAGATTTAAACGAGTGTACGTTCTAGATGTTACTCAGTTGAATCTCAT
TCAAACAAACTTCAAAGGGACCAAAATATATTCTTCGATTAAGAGGAAAG
ATTTTAATTAGTTGAAAGATGAGAATAACAGGgacattaatttttaagaa
tttctaaATTGAAGGGACCACCAGCTTCACTCTAAATAAAGAACGGCTTG
ATCAATAACGATACCAAAATAGCCAGAAATGACTGTACTTGCGGTGGCAG
TGTCTTACTCATTGCTCTTACTATATCTCTATTCAAACTACCATTCTAGA
ACGAAAATCCACATTCTTTTATCATCACTGAAAACTAGAAAAACTCGTTC
GTGCACCACGAGACTTAGCGATATTTGGCAACTCAAATGCATAGCATAGC
AAAAACTCTGTCAAATTTAAATGATGCAAAAAAGGCATACCAGGTCAATG
ATGGCGATCAATTTCATGCACAGTACGCgaaaataaattgatttaaGTAC
AAAGTGCCTTTTCAAAATTAATCCCTAACAATAACAAATTAAGTTCAGAA
AGTTATTTCTTCAATTTAAATCACCCTTAGATATCACTTCATATGCCAAA
AAAGGACAATACAATGAATATGCCTGACACGTCTCTTTTTGTTAGGAAAA
ATCTtcattgaaataaaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030898XLOC_030898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048587-exon-scaffold_143-1491911889:375652..376473TCONS_00048587-exon-scaffold_143-1491911889:375652..376473Clytia hemisphaericaexon
TCONS_00048587-exon-scaffold_143-1510915933:375652..376473TCONS_00048587-exon-scaffold_143-1510915933:375652..376473Clytia hemisphaericaexon
TCONS_00048587-exon-scaffold_143-1575043694:375652..376473TCONS_00048587-exon-scaffold_143-1575043694:375652..376473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:375652..376473 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.061675	0.0744082	0.13932	0.146312	0.664514	0	0.501083	0.692842	0.319788	0.854456	0.670087	0.43447	0.311722	0.123046	0.643794	0.22383	0.0818822	0	0	0	0.0554571	0	0	0.899324	1.70164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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