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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048583 ID=TCONS_00048583|Name=TCONS_00048583|organism=Clytia hemisphaerica|type=transcript|length=1328bp
CACTGTTTATTGCACTTTTTCGTCATTATCtgttttgctgagtcagcatt
tcaaaatttggatgagCTACTCGAGAGGAGAGAAAGACGATATCGTGCTG
AAGAAGCACTCTTAGACCATAATCTGGAAGAAGGTTTACTAGATGCAAAT
GAATATTTTCGACAGCTCAAAAACGGATTACGAGACGAGAACACCAGTTT
ACGAGAAACAAAGATTGATTTACGAGACCAAAAGAATAATATGCAAGATT
CGAAGATTAAGTTTCAAGAAACAAAGTCATATTTAAGAGATTTTATCCCA
TTTTTACGTGACCCAAGAAGCAACTTACGAGACACGAATAAAGCTTATAT
ACACGATTCAACAGAAAATAAAAGTGGGATCGTAACGAATTGCCATTATG
TAGTTGAACCTTATTACGAGAGACACCGATATCGTGGTTATGGATGGCAA
GTCAAACGAACAAGAAATATTCGCCATTGTGcagtgaatgaatgaatgaa
tgaatgaatgaatacaTAATGGTTTTTTCTCTGAAACATAAACGCCTAAC
AGGATAGGATTGAGATAAGAACACAATCCCTGAAAAGTAGGCTGGTTGCG
TGTGgccacgacgttgtttcaacgtttatttaacgttcacaacgtccata
taacgttagatgaacgttgaaacaacgttgtgtgccagctgggtggtTAC
GTGTGGTCACGAGGGTTTGCAAAAAGGATGTGACTATAAGGGTTTAGGAA
AGTTGGTGAAAATATATAGGGTTAATGGTTTGGGACGCAAAAAACGTTTA
TCCACTAATCCTGATACATCTTCGCTAAAAAAGTGCTTTTTACTTTGTTG
TTTGTAATCTGCGTTGCTATTAGCTACGGCTCCTGCGCTTTCATTAGTCG
TATcattttcatattattttactatatatttatatcaattttaatactaa
ttttcaatttttatagaaaatttcaatttcctgTAGGAAAGTATAGATGT
TGAGATAATTTGCTATAAATTAGGAACTTCACATTAGTTTAGTGTCCAAA
TTTCACCATGTTAAACTGagcacccagctggcacacaacgttgttcgaac
gtttatctaacgttcacaacgtccatataacgttagatgaacgttgaaac
aacgttgtgtgtcagctggaaAGAGATTGGAAACAATACTAATTGAGTCA
AGAACAAAtggaattaaaaagaaaatcgaaaatacGGATTTTCAAGATGA
AAGTTACATTGTTATTAACAATGCTggataaaaattgtttttgggaAAAA
CTCTCGATTATAGACCATAAGACCATTA Run BLAST on NCBI protein sequence of TCONS_00048583-protein >TCONS_00048583-protein ID=TCONS_00048583-protein|Name=TCONS_00048583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
HCLLHFFVIICFAESAFQNLDELLERRERRYRAEEALLDHNLEEGLLDAN
EYFRQLKNGLRDENTSLRETKIDLRDQKNNMQDSKIKFQETKSYLRDFIP
FLRDPRSNLRDTNKAYIHDSTENKSGIVTNCHYVVEPYYERHRYRGYGWQ
VKRTRNIRHCAVNE Run BLAST on NCBI transcript from alignment at scaffold_143:327722..329049 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048583 ID=TCONS_00048583|Name=TCONS_00048583|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at scaffold_143:327722..329049 (Clytia hemisphaerica)
TAATGGTCTTATGGTCTATAATCGAGAGTTTTtcccaaaaacaattttta
tccAGCATTGTTAATAACAATGTAACTTTCATCTTGAAAATCCgtatttt
cgattttctttttaattccaTTTGTTCTTGACTCAATTAGTATTGTTTCC
AATCTCTttccagctgacacacaacgttgtttcaacgttcatctaacgtt
atatggacgttgtgaacgttagataaacgttcgaacaacgttgtgtgcca
gctgggtgctCAGTTTAACATGGTGAAATTTGGACACTAAACTAATGTGA
AGTTCCTAATTTATAGCAAATTATCTCAACATCTATACTTTCCTAcagga
aattgaaattttctataaaaattgaaaattagtattaaaattgatataaa
tatatagtaaaataatatgaaaatgATACGACTAATGAAAGCGCAGGAGC
CGTAGCTAATAGCAACGCAGATTACAAACAACAAAGTAAAAAGCACTTTT
TTAGCGAAGATGTATCAGGATTAGTGGATAAACGTTTTTTGCGTCCCAAA
CCATTAACCCTATATATTTTCACCAACTTTCCTAAACCCTTATAGTCACA
TCCTTTTTGCAAACCCTCGTGACCACACGTAaccacccagctggcacaca
acgttgtttcaacgttcatctaacgttatatggacgttgtgaacgttaaa
taaacgttgaaacaacgtcgtggcCACACGCAACCAGCCTACTTTTCAGG
GATTGTGTTCTTATCTCAATCCTATCCTGTTAGGCGTTTATGTTTCAGAG
AAAAAACCATTAtgtattcattcattcattcattcattcattcactgCAC
AATGGCGAATATTTCTTGTTCGTTTGACTTGCCATCCATAACCACGATAT
CGGTGTCTCTCGTAATAAGGTTCAACTACATAATGGCAATTCGTTACGAT
CCCACTTTTATTTTCTGTTGAATCGTGTATATAAGCTTTATTCGTGTCTC
GTAAGTTGCTTCTTGGGTCACGTAAAAATGGGATAAAATCTCTTAAATAT
GACTTTGTTTCTTGAAACTTAATCTTCGAATCTTGCATATTATTCTTTTG
GTCTCGTAAATCAATCTTTGTTTCTCGTAAACTGGTGTTCTCGTCTCGTA
ATCCGTTTTTGAGCTGTCGAAAATATTCATTTGCATCTAGTAAACCTTCT
TCCAGATTATGGTCTAAGAGTGCTTCTTCAGCACGATATCGTCTTTCTCT
CCTCTCGAGTAGctcatccaaattttgaaatgctgactcagcaaaacaGA
TAATGACGAAAAAGTGCAATAAACAGTG Coding sequence (CDS) from alignment at scaffold_143:327722..329049 >TCONS_00048583 ID=TCONS_00048583|Name=TCONS_00048583|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_143:327722..329049 (Clytia hemisphaerica)
tcattcattcactgCACAATGGCGAATATTTCTTGTTCGTTTGACTTGCC
ATCCATAACCACGATATCGGTGTCTCTCGTAATAAGGTTCAACTACATAA
TGGCAATTCGTTACGATCCCACTTTTATTTTCTGTTGAATCGTGTATATA
AGCTTTATTCGTGTCTCGTAAGTTGCTTCTTGGGTCACGTAAAAATGGGA
TAAAATCTCTTAAATATGACTTTGTTTCTTGAAACTTAATCTTCGAATCT
TGCATATTATTCTTTTGGTCTCGTAAATCAATCTTTGTTTCTCGTAAACT
GGTGTTCTCGTCTCGTAATCCGTTTTTGAGCTGTCGAAAATATTCATTTG
CATCTAGTAAACCTTCTTCCAGATTATGGTCTAAGAGTGCTTCTTCAGCA
CGATATCGTCTTTCTCTCCTCTCGAGTAGctcatccaaattttgaaatgc
tgactcagcaaaacaGATAATGACGAAAAAGTGCAATAAACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048583-exon-scaffold_143-1491911889:327722..329049 | TCONS_00048583-exon-scaffold_143-1491911889:327722..329049 | Clytia hemisphaerica | exon |
| TCONS_00048583-exon-scaffold_143-1510915933:327722..329049 | TCONS_00048583-exon-scaffold_143-1510915933:327722..329049 | Clytia hemisphaerica | exon |
| TCONS_00048583-exon-scaffold_143-1575043694:327722..329049 | TCONS_00048583-exon-scaffold_143-1575043694:327722..329049 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:327722..329049 . |
Blast
The following BLAST results are available for this feature:
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