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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048561 ID=TCONS_00048561|Name=TCONS_00048561|organism=Clytia hemisphaerica|type=transcript|length=1066bp
GACGAAACGAGAAACCGTTGGAACATTTTTGTACTACAGgacattatgac
gtcatcgtacTTAATAAAGTCACTCAATTCTTCGCTGCAAAAACACGCTA
CCCATCTTTAAACCTTGCCCACCATTGTGGTCCACGGATCCGTCCGCAAG
AAGGGTATCCCGGTATTTACAACTGTGACCCGGTAGCCAATGCCATCAAG
TTATGCCAGTCACGTGGCATCAGAGTTGTTCTGGGACTCTCAAGTGAGAC
TGGTTCAAAATGGCTGACCAAGAAGGGAGATGGAATCGAGTTTGCAAATA
AAATATGGAACTTATTTTTAgggggaaaagaaaaaaagactgtAAGACCA
TTCGGAGACGCTGTTTTAAATGGGATCAACATTGGTATACGTACTGGAAA
AGGATTATTTTTAGACGAAGCATTTGCAGAATTCAGTCGCTTATATGGAA
CATCTAATGATGTATTCACTTCAACTCTCACAGTATCATGTGCCACGCCC
ACTATGAATTTAATCGAGATCAGCGCCCCAATCATCGACAGTGTTTATAT
TAAACATGATTTTGGCTCGCGATGCCATCCAACTGGAGATGGTTTTGAAA
CTAACCTCAACCAATGGGTGGCTGTCATAAGCCGtattaatttgaatttg
aataaagagttgaaattttctttggttttgatTCAAAGTAAAGACACTGA
AGCTTACGTGACCACTTATCAAGATTTCTATGACATTTATCAAACGaAAT
TGAAAAACCAACCACTATTTAAAGGCGTTGTTTTGGATGATGCAGGGTGG
GATGATGGACAGTTAGTCCTCCCTCAAAACAAAAGATACTCCACCATTTT
ATGGGCGCTATTCGGGCGGTCAGAACTCAAGCCGACTGGTACAGGTTTGA
AACGCACGGAAGCAAAACCGACGGAAGAAACTgttcaaaagaagaaagaa
acgCCAGAAGGTGAGTAATGGAAGAACGTGTTAGACCATGTTTAGACGTT
ACgattccgttccgttccgaaacagtgtgaacgtcaaaattcaaaacgtc
aaaaaagaagacgtta Run BLAST on NCBI protein sequence of TCONS_00048561-protein >TCONS_00048561-protein ID=TCONS_00048561-protein|Name=TCONS_00048561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
RNEKPLEHFCTTGHYDVIVLNKVTQFFAAKTRYPSLNLAHHCGPRIRPQE
GYPGIYNCDPVANAIKLCQSRGIRVVLGLSSETGSKWLTKKGDGIEFANK
IWNLFLGGKEKKTVRPFGDAVLNGINIGIRTGKGLFLDEAFAEFSRLYGT
SNDVFTSTLTVSCATPTMNLIEISAPIIDSVYIKHDFGSRCHPTGDGFET
NLNQWVAVISRINLNLNKELKFSLVLIQSKDTEAYVTTYQDFYDIYQTKL
KNQPLFKGVVLDDAGWDDGQLVLPQNKRYSTILWALFGRSELKPTGTGLK
RTEAKPTEETVQKKKETPEGE Run BLAST on NCBI transcript from alignment at scaffold_143:475317..478027- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048561 ID=TCONS_00048561|Name=TCONS_00048561|organism=Clytia hemisphaerica|type=transcript|length=2711bp|location=Sequence derived from alignment at scaffold_143:475317..478027- (Clytia hemisphaerica)
GACGAAACGAGAAACCGTTGGAACATTTTTGTACTACAGGACATTATGAC
GTCATCGTACTTAATAAAGTCACTCAATTCTTCGCTGCAAAAAGTTAGAA
ATTATTATTTATAGGGGATATTATTATAGAAAATGATTCAGCCTCCTTTT
ATTTACACCCAATTCATCAAACACGTATCCAGTCGCTTAGCTCGCGTTTT
GAATAAAGTTGCTCTGGCCTGGGTACGAGAGCTATCCCTGAATTGCAGCT
CAAATTACGTTTGAAGGTATCCCGGTTGTTAGAGCTTCATGCGCCTATAG
AGGGTCAAGAAAAATATCTGATAAAATAACTCAAAATAATTCTGATAGCA
TTCACGAAAAAGGTGATCACTCCCATTAGTAAAACCGAGAGTAATACATA
AGTGGGCCTGGGTACGAGATTGACAGTTCATACTCAGTCACTGGAATAAA
CCTTGGTCAGAATAATGCTCTGAATTTGAATACCAATATTATATCATACT
AGGAGAGGGGTACCGAGGCAAAATGACTAACCTTAATCTGTGAACGGTGC
GAGGATGCCTAATTCACACCATTTCTTACAAAAAGCAATCCCTCAAAAAA
TTCCCTCTCATCTATGGTCTAATTTCTTCTTTTACCTCGTTTCAGCACGC
TACCCATCTTTAAACCTTGCCCACCATTGTGGTCCACGGATCCGTCCGCA
AGAAGGGTATCCCGGTATTTACAACTGTGACCCGGTAGCCAATGCCATCA
AGTTATGCCAGTCACGTGGCATCAGAGTTGTTCTGGGACTCTCAAGTGAG
ACTGGTTCAAAATGGCTGACCAAGAAGGGAGATGGAATCGAGTTTGCAAA
TAAAATATGGAACTTATTTTTAGGGGGAAAAGAAAAAAAGACTGTAAGAC
CATTCGGAGAGTAAGTACACCAATGACTTGTTTTTTTTATAAGCATTGCA
CTTATTACCATGTCTAGGCTCAGATATGTAAAAAATTTAAGCATTTAACT
AAGCATTACCTTGAGCCTAATTCTTTTTCAGCTTTTGAAAAGTCATAATA
AGACTCTACTTCCCAACCCTAATTTGAACACTACAATTATGGACAAAATA
TTTGAGACAACGGGGATTTCCCGGTGAAAATTTAAACACCACAAATGATT
TTTTAGCGCCTTAAACTAGAGTTGGAAGACCTTAAGACCTTAGGATCTCA
GGATTTCAAAGCTCAAATTTGCTCCAATAAGGCTTGGAATATAGCCTGGA
AGCCATCGAACCCTTCTAAAACTTAAATATTCAATAAAAGAAAGTGGAAG
TGCTAAAAAATAGCAGTTCTCGCCCGAACTTTAAATTCTGAAAAACATTA
AAATACACTAAAATGTCGGTAGATGATCCTGAAATTAAGTCATAAGACGT
AAGTCTAATGTTAAAAGTCTATTTTCCGCAGCACTTATTTGAAGTACTTA
AAAATCTAGCGGTTTTAAAATTTTATGTCCAGCATTGTAGATTCGAATTT
TACTTTGTCAAGGGTTCGAAGTTTGTATCTAAAATCTACTGTATTAAATC
ATAACGTCATTCAAACTTTCCATAGTTCCACTGCAAATATCATATTGAAG
ACCACTAGACTGAAAGAAAACTCTCCCACTTTTTCCATAGCGCTGTTTTA
AATGGGATCAACATTGGTATACGTACTGGAAAAGGATTATTTTTAGACGA
AGCATTTGCAGAATTCAGTCGCTTATATGGAACATCTAATGATGTATTCA
CTTCAACTCTCACAGTATCATGTGCCACGCCCACTATGAATTTAATCGAG
ATCAGCGCCCCAATCATCGACAGTGTTTATATTAAACATGATTTTGGCTC
GCGATGCCATCCAACTGGAGATGGTTTTGAAACTAACCTCAACCAATGGG
TGGCTGTCATAAGCCGTATTAATTTGAATTTGAATAAAGAGTTGAAATTT
TCTTTGGTTTTGATTCAAAGTAAAGACACTGAAGCTTACGTGACCACTTA
TCAAGATTTCTATGACATTTATCAAACGGTACGATTATGACCAAAGTCAT
TTCATAAAGACTGACCCCCTTCTCCTAAGCCTTTTATGAATGAAAATAAA
AAAANATATTATGAAACCACCAAAGTCATTTCATAAAGACTGACCCCCTT
CTCCTAAGCCTTTTATGAATGAAAATAAAAAAAATCAATGTAAAAATGGC
CTTCTCATTCCCCAATGTGTAAAGAGTTCTCGAGAAGACATGATTTTGAG
TTTGATTGACTTTTCTCTATCCATCCTTTCTCGTGAATTATCACACTCTG
CCTGTCGAACGCCTCGAACCCCCACGAGCGATAACTTTCCACGAAGAAGA
AAGTTTTACAGACTATACAATAATTCTTTCTTTTCCTCTAGAAATTGAAA
AACCAACCACTATTTAAAGGCGTTGTTTTGGATGATGCAGGGTGGGATGA
TGGACAGTTAGTCCTCCCTCAAAACAAAAGATACTCCACCATTTTATGGG
CGCTATTCGGGCGGTCAGAACTCAAGCCGACTGGTACAGGTTTGAAACGC
ACGGAAGCAAAACCGACGGAAGAAACTGTTCAAAAGAAGAAAGAAACGCC
AGAAGGTGAGTAATGGAAGAACGTGTTAGACCATGTTTAGACGTTACGAT
TCCGTTCCGTTCCGAAACAGTGTGAACGTCAAAATTCAAAACGTCAAAAA
AGAAGACGTTA Coding sequence (CDS) from alignment at scaffold_143:475317..478027- >TCONS_00048561 ID=TCONS_00048561|Name=TCONS_00048561|organism=Clytia hemisphaerica|type=CDS|length=3864bp|location=Sequence derived from alignment at scaffold_143:475317..478027- (Clytia hemisphaerica)
AAATTGAAAAACCAACCACTATTTAAAGGCGTTGTTTTGGATGATGCAGG
GTGGGATGATGGACAGTTAGTCCTCCCTCAAAACAAAAGATACTCCACCA
TTTTATGGGCGCTATTCGGGCGGTCAGAACTCAAGCCGACTGGTACAGGT
TTGAAACGCACGGAAGCAAAACCGACGGAAGAAACTGTTCAAAAGAAGAA
AGAAACGCCAGAAGGTGAGTAACGCTGTTTTAAATGGGATCAACATTGGT
ATACGTACTGGAAAAGGATTATTTTTAGACGAAGCATTTGCAGAATTCAG
TCGCTTATATGGAACATCTAATGATGTATTCACTTCAACTCTCACAGTAT
CATGTGCCACGCCCACTATGAATTTAATCGAGATCAGCGCCCCAATCATC
GACAGTGTTTATATTAAACATGATTTTGGCTCGCGATGCCATCCAACTGG
AGATGGTTTTGAAACTAACCTCAACCAATGGGTGGCTGTCATAAGCCGTA
TTAATTTGAATTTGAATAAAGAGTTGAAATTTTCTTTGGTTTTGATTCAA
AGTAAAGACACTGAAGCTTACGTGACCACTTATCAAGATTTCTATGACAT
TTATCAAACGCACGCTACCCATCTTTAAACCTTGCCCACCATTGTGGTCC
ACGGATCCGTCCGCAAGAAGGGTATCCCGGTATTTACAACTGTGACCCGG
TAGCCAATGCCATCAAGTTATGCCAGTCACGTGGCATCAGAGTTGTTCTG
GGACTCTCAAGTGAGACTGGTTCAAAATGGCTGACCAAGAAGGGAGATGG
AATCGAGTTTGCAAATAAAATATGGAACTTATTTTTAGGGGGAAAAGAAA
AAAAGACTGTAAGACCATTCGGAGACGAAACGAGAAACCGTTGGAACATT
TTTGTACTACAGGACATTATGACGTCATCGTACTTAATAAAGTCACTCAA
TTCTTCGCTGCAAAAAAAATTGAAAAACCAACCACTATTTAAAGGCGTTG
TTTTGGATGATGCAGGGTGGGATGATGGACAGTTAGTCCTCCCTCAAAAC
AAAAGATACTCCACCATTTTATGGGCGCTATTCGGGCGGTCAGAACTCAA
GCCGACTGGTACAGGTTTGAAACGCACGGAAGCAAAACCGACGGAAGAAA
CTGTTCAAAAGAAGAAAGAAACGCCAGAAGGTGAGTAACGCTGTTTTAAA
TGGGATCAACATTGGTATACGTACTGGAAAAGGATTATTTTTAGACGAAG
CATTTGCAGAATTCAGTCGCTTATATGGAACATCTAATGATGTATTCACT
TCAACTCTCACAGTATCATGTGCCACGCCCACTATGAATTTAATCGAGAT
CAGCGCCCCAATCATCGACAGTGTTTATATTAAACATGATTTTGGCTCGC
GATGCCATCCAACTGGAGATGGTTTTGAAACTAACCTCAACCAATGGGTG
GCTGTCATAAGCCGTATTAATTTGAATTTGAATAAAGAGTTGAAATTTTC
TTTGGTTTTGATTCAAAGTAAAGACACTGAAGCTTACGTGACCACTTATC
AAGATTTCTATGACATTTATCAAACGCACGCTACCCATCTTTAAACCTTG
CCCACCATTGTGGTCCACGGATCCGTCCGCAAGAAGGGTATCCCGGTATT
TACAACTGTGACCCGGTAGCCAATGCCATCAAGTTATGCCAGTCACGTGG
CATCAGAGTTGTTCTGGGACTCTCAAGTGAGACTGGTTCAAAATGGCTGA
CCAAGAAGGGAGATGGAATCGAGTTTGCAAATAAAATATGGAACTTATTT
TTAGGGGGAAAAGAAAAAAAGACTGTAAGACCATTCGGAGACGAAACGAG
AAACCGTTGGAACATTTTTGTACTACAGGACATTATGACGTCATCGTACT
TAATAAAGTCACTCAATTCTTCGCTGCAAAAAAAATTGAAAAACCAACCA
CTATTTAAAGGCGTTGTTTTGGATGATGCAGGGTGGGATGATGGACAGTT
AGTCCTCCCTCAAAACAAAAGATACTCCACCATTTTATGGGCGCTATTCG
GGCGGTCAGAACTCAAGCCGACTGGTACAGGTTTGAAACGCACGGAAGCA
AAACCGACGGAAGAAACTGTTCAAAAGAAGAAAGAAACGCCAGAAGGTGA
GTAACGCTGTTTTAAATGGGATCAACATTGGTATACGTACTGGAAAAGGA
TTATTTTTAGACGAAGCATTTGCAGAATTCAGTCGCTTATATGGAACATC
TAATGATGTATTCACTTCAACTCTCACAGTATCATGTGCCACGCCCACTA
TGAATTTAATCGAGATCAGCGCCCCAATCATCGACAGTGTTTATATTAAA
CATGATTTTGGCTCGCGATGCCATCCAACTGGAGATGGTTTTGAAACTAA
CCTCAACCAATGGGTGGCTGTCATAAGCCGTATTAATTTGAATTTGAATA
AAGAGTTGAAATTTTCTTTGGTTTTGATTCAAAGTAAAGACACTGAAGCT
TACGTGACCACTTATCAAGATTTCTATGACATTTATCAAACGCACGCTAC
CCATCTTTAAACCTTGCCCACCATTGTGGTCCACGGATCCGTCCGCAAGA
AGGGTATCCCGGTATTTACAACTGTGACCCGGTAGCCAATGCCATCAAGT
TATGCCAGTCACGTGGCATCAGAGTTGTTCTGGGACTCTCAAGTGAGACT
GGTTCAAAATGGCTGACCAAGAAGGGAGATGGAATCGAGTTTGCAAATAA
AATATGGAACTTATTTTTAGGGGGAAAAGAAAAAAAGACTGTAAGACCAT
TCGGAGACGAAACGAGAAACCGTTGGAACATTTTTGTACTACAGGACATT
ATGACGTCATCGTACTTAATAAAGTCACTCAATTCTTCGCTGCAAAAAAA
ATTGAAAAACCAACCACTATTTAAAGGCGTTGTTTTGGATGATGCAGGGT
GGGATGATGGACAGTTAGTCCTCCCTCAAAACAAAAGATACTCCACCATT
TTATGGGCGCTATTCGGGCGGTCAGAACTCAAGCCGACTGGTACAGGTTT
GAAACGCACGGAAGCAAAACCGACGGAAGAAACTGTTCAAAAGAAGAAAG
AAACGCCAGAAGGTGAGTAACGCTGTTTTAAATGGGATCAACATTGGTAT
ACGTACTGGAAAAGGATTATTTTTAGACGAAGCATTTGCAGAATTCAGTC
GCTTATATGGAACATCTAATGATGTATTCACTTCAACTCTCACAGTATCA
TGTGCCACGCCCACTATGAATTTAATCGAGATCAGCGCCCCAATCATCGA
CAGTGTTTATATTAAACATGATTTTGGCTCGCGATGCCATCCAACTGGAG
ATGGTTTTGAAACTAACCTCAACCAATGGGTGGCTGTCATAAGCCGTATT
AATTTGAATTTGAATAAAGAGTTGAAATTTTCTTTGGTTTTGATTCAAAG
TAAAGACACTGAAGCTTACGTGACCACTTATCAAGATTTCTATGACATTT
ATCAAACGCACGCTACCCATCTTTAAACCTTGCCCACCATTGTGGTCCAC
GGATCCGTCCGCAAGAAGGGTATCCCGGTATTTACAACTGTGACCCGGTA
GCCAATGCCATCAAGTTATGCCAGTCACGTGGCATCAGAGTTGTTCTGGG
ACTCTCAAGTGAGACTGGTTCAAAATGGCTGACCAAGAAGGGAGATGGAA
TCGAGTTTGCAAATAAAATATGGAACTTATTTTTAGGGGGAAAAGAAAAA
AAGACTGTAAGACCATTCGGAGACGAAACGAGAAACCGTTGGAACATTTT
TGTACTACAGGACATTATGACGTCATCGTACTTAATAAAGTCACTCAATT
CTTCGCTGCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00048561-exon-scaffold_143-1575043694:477935..478027 | TCONS_00048561-exon-scaffold_143-1575043694:477935..478027 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1575043694:477118..477382 | TCONS_00048561-exon-scaffold_143-1575043694:477118..477382 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1575043694:476000..476387 | TCONS_00048561-exon-scaffold_143-1575043694:476000..476387 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1575043694:475317..475636 | TCONS_00048561-exon-scaffold_143-1575043694:475317..475636 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1510915933:477935..478027 | TCONS_00048561-exon-scaffold_143-1510915933:477935..478027 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1510915933:477118..477382 | TCONS_00048561-exon-scaffold_143-1510915933:477118..477382 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1510915933:476000..476387 | TCONS_00048561-exon-scaffold_143-1510915933:476000..476387 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1510915933:475317..475636 | TCONS_00048561-exon-scaffold_143-1510915933:475317..475636 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1491911889:477935..478027 | TCONS_00048561-exon-scaffold_143-1491911889:477935..478027 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1491911889:477118..477382 | TCONS_00048561-exon-scaffold_143-1491911889:477118..477382 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1491911889:476000..476387 | TCONS_00048561-exon-scaffold_143-1491911889:476000..476387 | Clytia hemisphaerica | exon |
| TCONS_00048561-exon-scaffold_143-1491911889:475317..475636 | TCONS_00048561-exon-scaffold_143-1491911889:475317..475636 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:475317..478027 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR017853 | Glycoside_hydrolase_SF |
Blast
The following BLAST results are available for this feature:
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