TCONS_00048559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048559
Unique NameTCONS_00048559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048559 ID=TCONS_00048559|Name=TCONS_00048559|organism=Clytia hemisphaerica|type=transcript|length=989bp
cttcttcaaattttgtggTTATTCAGCGCACGACTTGGGGaaagttgttc
tttcttttaGGTAGGAGATACGTTAAAAATGTCCTTTAAGCAACAAAACA
ATATTGTGATAAGTATTATAAAACATTCGAAGGCTACGGTTCAATCATAA
TGCTATATGGACCGGATCTTATGCAGCTTGGAGAAACTAAAGGATCATCT
TATCACAAACAGATAAAGAGGCCCTTCTtacaaaaagcttttttggtTGG
AAACATCTCTGAAAAAAGCTACTAAAAAGGCTTTACAAAAGAATGTCTTA
GGTTTCATAAATGTTCATAAAAGAGAATAAATTACAACACTGAACTACAA
TTAcgaataacaaaataaaatatcttAGGCAGTGTGGTATGTGATATGtg
ataaataataaaatctCGTATATAGGTAAATTCATTaatctttgaaattc
aaaattgcAACTAAATTCATAATCGGTCAGACGCCAAGACAAAGTTACGT
ATGTTccaaaataattgatttttatcATCCCGTCAACTAGAATTAATAAT
ATAATTAAGACAGCTCATAGAAAAACTTTGTCGTGACGGCTCAAATCATC
TAAAAttaaatactaaaaaaaatctgaaaaccaAATATCTGGCAACTACA
CTAGAAATACTGAGTTGCTTCAATTTTCCTTTCCCAGGTATAATTTCTCC
ATGAGTTTATGAACCACAACCCAAGCATAGAAAGTCATATACCTTATTAT
GACGTAACGGTGTCAAAAGCCAGTAATGTAAGCCAGAACGTGAGctatat
tcaaaatttgaatgcTGAAAAGTCAAAACAGTTTCATCCTTTTACTCTGC
CTTCTGTCTTGCTTCGACATCGAGTTCAGCAAGAGAATCAAATCCACCAA
CTAGCTGAATGATATTGATGGCATTCTTAGTGAAACAGATTGGGAAACAA
CCCATGGCTATCACGTGCACAACACCGTATGCTCCAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_143:438130..439340-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048559 ID=TCONS_00048559|Name=TCONS_00048559|organism=Clytia hemisphaerica|type=transcript|length=1211bp|location=Sequence derived from alignment at scaffold_143:438130..439340- (Clytia hemisphaerica)
CTTCTTCAAATTTTGTGGTTATTCAGCGCACGACTTGGGGAAAGTTGTTC
TTTCTTTTAGGTAGGAGATACGTTAAAAATGTCCTTTAAGCAACAAAACA
ATATTGTGATAAGTATTATAAAACATTCGAAGGCTACGGTTCAATCATAA
TGCTATATGGACCGGATCTTATGCAGCTTGGAGAAACTAAAGGATCATCT
TATCACAAACAGATAAAGAGGCCCTTCTTACAAAAAGCTTTTTTGGTTGG
AAACATCTCTAAAAAAAGCTACTAAAAAGGCTTTACAAAAGATTGTTAAC
CGGTTACTTTTTCGAAGCGGGCTACATGGCTTTTTGCGCAATGCAATTGG
TTCTTTTCGCATGACGACGGGCCTACATTGTCCAGAGTTGCCNTGCAGCT
TGGAGAAACTAAAGGATCATCTTATCACAAACAGATAAAGAGGCCCTTCT
TACAAAAAGCTTTTTTGGTTGGAAACATCTCTGAAAAAAGCTACTAAAAA
GGCTTTACAAAAGAATGTCTTAGGTTTCATAAATGTTCATAAAAGAGAAT
AAATTACAACACTGAACTACAATTACGAATAACAAAATAAAATATCTTAG
GCAGTGTGGTATGTGATATGTGATAAATAATAAAATCTCGTATATAGGTA
AATTCATTAATCTTTGAAATTCAAAATTGCAACTAAATTCATAATCGGTC
AGACGCCAAGACAAAGTTACGTATGTTCCAAAATAATTGATTTTTATCAT
CCCGTCAACTAGAATTAATAATATAATTAAGACAGCTCATAGAAAAACTT
TGTCGTGACGGCTCAAATCATCTAAAATTAAATACTAAAAAAAATCTGAA
AACCAAATATCTGGCAACTACACTAGAAATACTGAGTTGCTTCAATTTTC
CTTTCCCAGGTATAATTTCTCCATGAGTTTATGAACCACAACCCAAGCAT
AGAAAGTCATATACCTTATTATGACGTAACGGTGTCAAAAGCCAGTAATG
TAAGCCAGAACGTGAGCTATATTCAAAATTTGAATGCTGAAAAGTCAAAA
CAGTTTCATCCTTTTACTCTGCCTTCTGTCTTGCTTCGACATCGAGTTCA
GCAAGAGAATCAAATCCACCAACTAGCTGAATGATATTGATGGCATTCTT
AGTGAAACAGATTGGGAAACAACCCATGGCTATCACGTGCACAACACCGT
ATGCTCCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030874XLOC_030874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048559-exon-scaffold_143-1575043694:439121..439340TCONS_00048559-exon-scaffold_143-1575043694:439121..439340Clytia hemisphaericaexon
TCONS_00048559-exon-scaffold_143-1575043694:438130..438898TCONS_00048559-exon-scaffold_143-1575043694:438130..438898Clytia hemisphaericaexon
TCONS_00048559-exon-scaffold_143-1510915933:439121..439340TCONS_00048559-exon-scaffold_143-1510915933:439121..439340Clytia hemisphaericaexon
TCONS_00048559-exon-scaffold_143-1510915933:438130..438898TCONS_00048559-exon-scaffold_143-1510915933:438130..438898Clytia hemisphaericaexon
TCONS_00048559-exon-scaffold_143-1491911889:439121..439340TCONS_00048559-exon-scaffold_143-1491911889:439121..439340Clytia hemisphaericaexon
TCONS_00048559-exon-scaffold_143-1491911889:438130..438898TCONS_00048559-exon-scaffold_143-1491911889:438130..438898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:438130..439340 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.40077	7.87348	0.595352	1.07693	3.65897	0.000263511	4.54018	3.81601	4.48746	3.86882	4.72012	2.46356	2.48572	2.2696	2.61456	3.88761	0.73544	0.711767	0.555429	2.10973	2.81957	4.678	8.27795	8.44316	0	0.188322	9.09967	8.45363	13.1127	10.811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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