TCONS_00048542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048542
Unique NameTCONS_00048542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048542 ID=TCONS_00048542|Name=TCONS_00048542|organism=Clytia hemisphaerica|type=transcript|length=281bp
TTACGTACAATTTtgttaaacaaaaatatttctacatTTGTAAATTTTCG
GTTACTAATCGTACATTCACGTTTGTTCGAACCACTTCTTCACAGATTTC
GTTGTCTTTGTTTCTTATCGAACGGGCTGTAGAAATTTGATCGTCTCGGT
TTACacCTTGTAAGGTGGTATGTGCAACGAGGCATTGATACCACGATCAA
CAACAAGTGATATATGCAACGACGGCAGGGATATCTTTCAAAATAATAGG
CGCAACGAGGCATTGACATCTCCAAGTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_143:185242..186181-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048542 ID=TCONS_00048542|Name=TCONS_00048542|organism=Clytia hemisphaerica|type=transcript|length=940bp|location=Sequence derived from alignment at scaffold_143:185242..186181- (Clytia hemisphaerica)
TTACGTACAATTTTGTTAAACAAAAATATTTCTACATTTGTAAATTTTCG
GTTACTAATCGTACATTCACGTTTGTTCGAACCACTTCTTCACAGATTTC
GTTGTCTTTGTTTCTTATCGAACGGGCTGTAGAAATTTGATCGTCTCGGT
TTACACATATAAGAAAAAATTAGGAAAGAAGAGTTGAAAAGGTTAACTTA
ACTAATCTCAGTTAGCGCTCTTCTGCAAATGCGAGGATTATCAGAATCGA
AAGGTACCATTTTAAATATATTTTCAACGCATGCGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGAAACACG
CTTCTCCACTATTTCTCGTCTTAGCTTGGAGTGGTAAAGATATAAAGAAC
AAATCTTAATTTAATTTTGGAATCATATTGCATTGAACACGAGGAGAAAA
AAGACAAGAAACGCAAATGTTGTAACTACGTAACGTTAAGTGCCAAGGTT
ACTACATACTAGGAAATTGGAATCTTTTAGCATGACGAATAAGAATAAGA
TCTGAGGTTAAAGGTTCCTTGCTGTTCTTCTTTGAATTTAAGTTTCTGCT
AGCATTGACATGTCTATCACCTTCAAGCGCAAGCTTCACTAGAGGGTTGT
CTGTAGGAGAATAAAAACCTGAGGAATGATGGCCCCAACGAATGCAACGG
TCAAGGCTCCTTCTGCAGCACCAGAACAAGTAAGGTCATAAGGTCAACAA
TATAGAAAAAATGTAAATGTAACTTTCATACCTTGTAAGGTGGTATGTGC
AACGAGGCATTGATACCACGATCAACAACAAGTGATATATGCAACGACGG
CAGGGATATCTTTCAAAATAATAGGCGCAACGAGGCAACCATATCTCTAA
ATAGATGTGTGCAACGAGGCATTGACATCTCCAAGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030863XLOC_030863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048542-exon-scaffold_143-1575043694:186026..186181TCONS_00048542-exon-scaffold_143-1575043694:186026..186181Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1575043694:185298..185400TCONS_00048542-exon-scaffold_143-1575043694:185298..185400Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1575043694:185242..185263TCONS_00048542-exon-scaffold_143-1575043694:185242..185263Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1510915933:186026..186181TCONS_00048542-exon-scaffold_143-1510915933:186026..186181Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1510915933:185298..185400TCONS_00048542-exon-scaffold_143-1510915933:185298..185400Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1510915933:185242..185263TCONS_00048542-exon-scaffold_143-1510915933:185242..185263Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1491911889:186026..186181TCONS_00048542-exon-scaffold_143-1491911889:186026..186181Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1491911889:185298..185400TCONS_00048542-exon-scaffold_143-1491911889:185298..185400Clytia hemisphaericaexon
TCONS_00048542-exon-scaffold_143-1491911889:185242..185263TCONS_00048542-exon-scaffold_143-1491911889:185242..185263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:185242..186181 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4084	4.41282	2.47457	1.22077	0	0.325879	0	1.35964	4.72486	0.775449	0	1.65028	3.75363	0	5.06209	3.40443	5.51819	2.4445	2.40299	1.1423	0	2.11591	9.2787	5.12164	3.27978	4.23119	2.88551	0	10.7654	9.26675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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