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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048525 ID=TCONS_00048525|Name=TCONS_00048525|organism=Clytia hemisphaerica|type=transcript|length=1324bpRun BLAST on NCBI protein sequence of TCONS_00048525-protein >TCONS_00048525-protein ID=TCONS_00048525-protein|Name=TCONS_00048525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp MADVKCNEGCSDSKTICVAEQKPKKTIKRRVLNQIPAEILNNQLLNNAIKRun BLAST on NCBI transcript from alignment at scaffold_143:46814..56636- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048525 ID=TCONS_00048525|Name=TCONS_00048525|organism=Clytia hemisphaerica|type=transcript|length=9823bp|location=Sequence derived from alignment at scaffold_143:46814..56636- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:46814..56636- >TCONS_00048525 ID=TCONS_00048525|Name=TCONS_00048525|organism=Clytia hemisphaerica|type=CDS|length=14976bp|location=Sequence derived from alignment at scaffold_143:46814..56636- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048525 vs. Swiss-Prot (Human)
Match: DPH1 (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 OS=Homo sapiens GN=DPH1 PE=1 SV=2) HSP 1 Score: 522.316 bits (1344), Expect = 0.000e+0 Identity = 242/385 (62.86%), Postives = 300/385 (77.92%), Query Frame = 1
Query: 121 KRRVLNQIPAEILNNQLLNNAIKQLPSNYNFEIHKTIWKLKQAESKRVALQFPEGLLLYACAIADIVEEFTEAETVIMGDVTYGACCVDDYSARALECDFMVHYGHSCLVPI-SATDGIKMLYVFVDIQIDIIHFIETVKLNFANGSKLALVSTVQFITSLQAAKLELETNFNITIPQAKPLSPGEILGCTSPKLP-EQDAIIYLGDGRFHLESIMIHNPKLAAYMYDPYSKVFSREEYQHEEMLRNRKRAIETASKAQTFGLILGTLGRQGSPKVLESLEEKLTAAGKKFVIVLLSEIFPGKLKLFEEIDAWVQVACPRLSIDWGLAFQKPLLSPYELAVALEECSWKTVYPMDYYANESLGPWTVNNEK----HRPVRKPRNK 1257
+ RV NQIP EIL N L AI+ LPSNYNFEI KTIW+++QA++K+VALQ PEGLLL+AC I DI+E FTEAE ++MGDVTYGACCVDD++ARAL DF+VHYGHSCL+P+ ++ ++LYVFVDI+ID H +++++L F + LALVST+QF+++LQAA EL+ + +++PQ KPLSPGEILGCTSP+L E +A++YLGDGRFHLES+MI NP + AY YDPYSKV SRE Y H+ M R+ AI TA A+++GLILGTLGRQGSPK+LE LE +L A G FV +LLSEIFP KL L E+D WVQVACPRLSIDWG AF KPLL+PYE AVAL + SW+ YPMD+YA SLGPWTVN+ + H P R R K
Sbjct: 30 RGRVANQIPPEILKNPQLQAAIRVLPSNYNFEIPKTIWRIQQAQAKKVALQMPEGLLLFACTIVDILERFTEAEVMVMGDVTYGACCVDDFTARALGADFLVHYGHSCLIPMDTSAQDFRVLYVFVDIRIDTTHLLDSLRLTFPPATALALVSTIQFVSTLQAAAQELKAEYRVSVPQCKPLSPGEILGCTSPRLSKEVEAVVYLGDGRFHLESVMIANPNVPAYRYDPYSKVLSREHYDHQRMQAARQEAIATARSAKSWGLILGTLGRQGSPKILEHLESRLRALGLSFVRLLLSEIFPSKLSLLPEVDVWVQVACPRLSIDWGTAFPKPLLTPYEAAVALRDISWQQPYPMDFYAGSSLGPWTVNHGQDRRPHAPGRPARGK 414 The following BLAST results are available for this feature:
BLAST of TCONS_00048525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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