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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048504 ID=TCONS_00048504|Name=TCONS_00048504|organism=Clytia hemisphaerica|type=transcript|length=2140bpRun BLAST on NCBI protein sequence of TCONS_00048504-protein >TCONS_00048504-protein ID=TCONS_00048504-protein|Name=TCONS_00048504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp MEFEVKNDLSRVANILGNLEDSTGLASSHLKNQSDDDSGWDTDLECEDETRun BLAST on NCBI transcript from alignment at scaffold_143:266576..290362+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048504 ID=TCONS_00048504|Name=TCONS_00048504|organism=Clytia hemisphaerica|type=transcript|length=23787bp|location=Sequence derived from alignment at scaffold_143:266576..290362+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:266576..290362+ >TCONS_00048504 ID=TCONS_00048504|Name=TCONS_00048504|organism=Clytia hemisphaerica|type=CDS|length=20736bp|location=Sequence derived from alignment at scaffold_143:266576..290362+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048504 vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2) HSP 1 Score: 240.35 bits (612), Expect = 2.952e-70 Identity = 152/411 (36.98%), Postives = 238/411 (57.91%), Query Frame = 1
Query: 181 DTDLECEDETTSDAFDVVQVNKEKYVKACKECGVVPASYFLRNMTNVRLNMSHHGLGHKGAKAIAIGLMTNTHLTALDLSDNCLGSEGVSCICEMMIENCFISELDLSENNIGYEGVKHICALLMQ-SDSLKRLALRKNSLETKSAVILSNTLKSHTGLRFIDLSNNNFGEEAGLHFAPVISTNEYLEEINLSWNHLRQKGAFAIAKSLKENYTLKKLDLSWNGFGDDGIYVXXXXXXXXXXXXXXXXXXXRITHIGAGHLQKALKENEGLQVFKLGHNPLQH-GVTFLIQGIKTNLNSTLVEFDLTDVQVNDEFITILNQLKTERTELQVYHGGLGG-APQKAA-ERPKPMRVLRDYIKNNQMRVFDLFKSLDKDKSMSISVPEFV-AGLKETGVPLRIDELLTLVKSLD 1398
+TDLE ED+ F Q KE Y++ACK GVVP SYF+RNM +N++HHGLG +G KAIAI L++N +T L+L DNC+ EGV + EM+ EN ++ E+++S N++G EG + I + S S+ L L N + SA +L L ++ ++ +DLS+N F + G H +++ N L ++LSWN+ +GA A+ L+ N TL KLDLS NGFG++ L + L N L L++ N I + GA + K L+ NE L+V KL NP+ G LI IK N S + E D+++V V+++F+ L+ + +L V + G +P+K PM++++ Y +++ + D FKSL+ +M +SV EF +++ VPL ++ ++K LD
Sbjct: 66 ETDLEIEDD--EKFFTTGQ--KELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTNPMKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQKVMIEQNKVPLNQYQVREVIKKLD 472 The following BLAST results are available for this feature:
BLAST of TCONS_00048504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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