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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048494 ID=TCONS_00048494|Name=TCONS_00048494|organism=Clytia hemisphaerica|type=transcript|length=8642bp protein sequence of TCONS_00048494-protein >TCONS_00048494-protein ID=TCONS_00048494-protein|Name=TCONS_00048494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2706bp FRSLKQVLFLQCINSDILKSRMMVGTWTKLIITFWCLVVLRGQQVPLDPDRun BLAST on NCBI transcript from alignment at scaffold_143:133400..152320+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048494 ID=TCONS_00048494|Name=TCONS_00048494|organism=Clytia hemisphaerica|type=transcript|length=18921bp|location=Sequence derived from alignment at scaffold_143:133400..152320+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:133400..152320+ >TCONS_00048494 ID=TCONS_00048494|Name=TCONS_00048494|organism=Clytia hemisphaerica|type=CDS|length=162420bp|location=Sequence derived from alignment at scaffold_143:133400..152320+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048494 vs. Swiss-Prot (Human)
Match: MEGF6 (Multiple epidermal growth factor-like domains protein 6 OS=Homo sapiens GN=MEGF6 PE=1 SV=4) HSP 1 Score: 209.534 bits (532), Expect = 7.714e-54 Identity = 143/401 (35.66%), Postives = 188/401 (46.88%), Query Frame = 1
Query: 274 WAHKHKYRTAYRKAYRSVHEVAYRKEHICCPGWKQQGD--SCPIPVC-KSPCEHGT-CISINDTSSNTEKNICQCDQGWRKEDDASSCDKDIDECATLNGNCDHICQNTDGSYVCSCRSGYKVSSNPKKCEDINECLANNKACM--CVDQACTATCKNIIGSHLCECSVGFHTV-NNRICQDTNECLVNKGGCSDICVNEEGRYHCQCPTGHQLKQDNKTCEDINECLTQNGGCAHHCNNTDGSFECYCRDGYFLDANKKDC-----SDHNECATTNHGCQYKCENTQGGYICTCPKGFELDKNNKNCIDINECEVIVVTSSGRNTTIADCSSGCLNLNGTYKCTCPPGWLLLHDGKTCADYDECLLTTRPLCSDTCVNTIGSYKCICPDGYRLADNKKDC 1440
W H+ RT Y YR V+ R CC GW QQ D C C S C HG C+ C C G++ C D+DEC T NG C H C NT GSY+C C+ G+++ ++ + C IN C N C CV + I H C+C GF + R C + C G C C G C+C G+QL D K CED++EC CAH C NT GSF+C C GY L A+ + C N C N GC + C +T G +CTCP+G+ELD + + CID+++C C C N G Y+C C G+ L DG C D DEC ++R C C N GS++C C GYRL ++++ C
Sbjct: 82 WCVGHERRTVYYMGYRQVYTTEARTVLRCCRGWMQQPDEEGCLSAECSASLCFHGGRCVP-------GSAQPCHCPPGFQ----GPRCQYDVDECRTHNGGCQHRCVNTPGSYLCECKPGFRLHTDSRTCLAINSCALGNGGCQHHCV--------QLTITRHRCQCRPGFQLQEDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLAADGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELGADGRQCYRIEMEIVNSCEANNGGCSHGCSHTSAGPLCTCPRGYELDTDQRTCIDVDDCADSPC-----------CQQVCTNNPGGYECGCYAGYRLSADGCGCEDVDEC-ASSRGGCEHHCTNLAGSFQCSCEAGYRLHEDRRGC 451 HSP 2 Score: 152.14 bits (383), Expect = 2.440e-36 Identity = 115/340 (33.82%), Postives = 159/340 (46.76%), Query Frame = 1
Query: 436 ISINDTSSNTEKNICQCDQGWRKEDDASSCDKDIDEC-ATLNGNCDHICQNTDGSY-VCSCRSGYKVSSNPKKCEDINECLANNKACMCVDQACTATCKNIIGSHLCECSVGFHT-VNNRICQDTNECLVNKGGCSDICVNEE-GRYHCQCPTGHQLKQDNKTCEDINECLTQNGGCAHHCNNTDGSFECYCRDGYFLDANKKDCSDHNECATTNHGCQYKCENTQGGYICTCPKGFELDKNNKNCIDINECEVIVVTSSGRNTTIADCSSGCLNLNGTYKCTCPPGWLLLHDGKTCADYDECLLTTRPLCSDTCVNTIGSYKCICPDGYRLADNKKDCQ 1443
+ + + + +C +GW ++ D C EC A+L C H + GS C C G++ P+ D++EC +N C C N GS+LCEC GF ++R C N C + GGC CV R+ CQC G QL++D + C + C +NG C H C G C C GY L A+ K C D +ECA C + C NTQG + C C G+EL + + C I E+ +V S N CS GC + + CTCP G+ L D +TC D D+C P C C N G Y+C C GYRL+ + C+
Sbjct: 94 MGYRQVYTTEARTVLRCCRGWMQQPDEEGCLSA--ECSASL---CFHGGRCVPGSAQPCHCPPGFQ---GPRCQYDVDECRTHNGGCQ-------HRCVNTPGSYLCECKPGFRLHTDSRTCLAINSCALGNGGCQHHCVQLTITRHRCQCRPGFQLQEDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLAADGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELGADGRQCYRI---EMEIVNSCEANN--GGCSHGCSHTSAGPLCTCPRGYELDTDQRTCIDVDDC--ADSPCCQQVCTNNPGGYECGCYAGYRLSADGCGCE 411 HSP 3 Score: 122.479 bits (306), Expect = 2.697e-27 Identity = 76/223 (34.08%), Postives = 113/223 (50.67%), Query Frame = 1
Query: 409 KSPC--EHGTCISINDTSSNTEKNICQCDQGWRKEDDASSCDKDIDECATLNGNCDHICQNTDGSYVCSCRSGYKVSSNPKKC-----EDINECLANNKACMCVDQACTATCKNIIGSHLCECSVGFHT-VNNRICQDTNECLVNKGGCSDICVNEEGRYHCQCPTGHQLKQDNKTCEDINECLTQNGGCAHHCNNTDGSFECYCRDGYFLDANKKDCSDHNE 1053
+SPC +G+C+ + C+C G++ D +C+ D+DECA C H C NT GS+ C C +GY++ ++ ++C E +N C ANN C + C + LC C G+ + R C D ++C + C +C N G Y C C G++L D CED++EC + GGC HHC N GSF+C C GY L +++ CS E
Sbjct: 245 RSPCANRNGSCMHRCQVVRGLAR--CECHVGYQLAADGKACE-DVDECAAGLAQCAHGCLNTQGSFKCVCHAGYELGADGRQCYRIEMEIVNSCEANNGGC-------SHGCSHTSAGPLCTCPRGYELDTDQRTCIDVDDC-ADSPCCQQVCTNNPGGYECGCYAGYRLSADGCGCEDVDECASSRGGCEHHCTNLAGSFQCSCEAGYRLHEDRRGCSPLEE 456 The following BLAST results are available for this feature:
BLAST of TCONS_00048494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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